Workflow: CreateSymlink-workflow.cwl
Fetched 2026-10-20 10:25:13 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PATH | String[] | ||
| tree | String[] | ||
| gff_name | String[] | ||
| MAIN_PATH | String | ||
| cds_fasta_name | String[] | ||
| deepPATH_bigwig | String[] | ||
| scientific_name | String[] | ||
| deepPATH_analyses | String[] | ||
| genome_fasta_name | String[] | ||
| protein_fasta_name | String[] | ||
| transcript_fasta_name | String[] | ||
| deepPATH_genomic_fasta | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bigwig_gzip |
flow_reorganize_symlinks/bigwig_gzip.cwl
(CommandLineTool)
|
||
| setup_folder |
flow_reorganize_symlinks/setup_folder.cwl
(CommandLineTool)
|
||
| scaffold_gzip |
flow_reorganize_symlinks/scaffold_gzip.cwl
(CommandLineTool)
|
||
| analyses_symlink |
flow_reorganize_symlinks/analyses_symlink.cwl
(CommandLineTool)
|
||
| assembly_symlink |
flow_reorganize_symlinks/assembly_symlink.cwl
(CommandLineTool)
|
||
| gzip-conditional |
4b7e597a32d56b3196980875fe0e44ab
(CommandLineTool)
|
||
| scaffold_symlink |
flow_reorganize_symlinks/scaffold_symlink.cwl
(CommandLineTool)
|
||
| bigwig_symlink-gc |
flow_reorganize_symlinks/bigwig_symlink-gc.cwl
(CommandLineTool)
|
||
| annotation_symlink |
flow_reorganize_symlinks/annotation_symlink.cwl
(CommandLineTool)
|
||
| bigwig_symlink-gaps |
flow_reorganize_symlinks/bigwig_symlink-gaps.cwl
(CommandLineTool)
|
||
| analyses_symlink_protein |
flow_reorganize_symlinks/analyses_symlink_protein.cwl
(CommandLineTool)
|
Outputs
There are no outputs in this workflow
Permalink:
https://w3id.org/cwl/view/git/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/CreateSymlink-workflow.cwl
