Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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alignment_prep.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/alignment_prep.cwl Branch/Commit ID: master |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-deblur.cwl |
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exomeseq-gatk4-02-variantdiscovery.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl Branch/Commit ID: master |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/conflict-wf.cwl Branch/Commit ID: master Packed ID: collision |
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fortunecow.cwl
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https://github.com/chgarth/cwl-openfoam.git
Path: cwl/fortunecow.cwl Branch/Commit ID: main |
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module-6
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-6.cwl Branch/Commit ID: 2.4.x |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 135976d |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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umi duplex alignment workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: downsample_and_recall |
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QIIME2 Step 1 paired end sequences
QIIME2 Import and Demux Step 1 paired end sequences |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |