Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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gdc_main_annotation_workflow.cwl
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https://github.com/NCI-GDC/vep-cwl.git
Path: v102/workflows/subworkflows/gdc_main_annotation_workflow.cwl Branch/Commit ID: master |
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workflow_docker.cwl
[![Docker Repository on Quay](https://quay.io/repository/ratschlab/workflow-experiment/status \"Docker Repository on Quay\")](https://quay.io/repository/ratschlab/workflow-experiment) Very simple and very artifical workflow to experiment with containers and cwl. |
https://github.com/ratschlab/tools-cwl-workflow-experiments.git
Path: cwl/workflow_docker.cwl Branch/Commit ID: master |
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VIRTUS.PE.cwl
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https://github.com/yyoshiaki/VIRTUS2.git
Path: workflow/VIRTUS.PE.cwl Branch/Commit ID: master |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: somatic-lowfreq/pisces-titr-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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workflow_mock_ngtax.cwl
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https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: master |
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count-lines14-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines14-wf.cwl Branch/Commit ID: master |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: No_filters_detect_variants |
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output-arrays-int-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/output-arrays-int-wf.cwl Branch/Commit ID: master |