Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph biowardrobe_chipseq_se.cwl

Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of BigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: 77330fac31568e2c3e080ea771df813c039aefe6
workflow graph main-SGDP-recall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: SGDP-recall-CGC/SGDP-recall-cgc/main-SGDP-recall.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5
workflow graph scatter-valuefrom-wf6.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/scatter-valuefrom-wf6.cwl

Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143
workflow graph Filter Protein Seeds I; Find ProSplign Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: 33414c888997d558bdcb558ca33c3a728a3e6143
workflow graph etl.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/etl.cwl

Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7
workflow graph Filter Protein Alignments I

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_align_filter.cwl

Branch/Commit ID: b51e37098871db9fbb7ee0cc642df98ddbb9092b
workflow graph Seed Search Compartments

https://github.com/ncbi-gpipe/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: b51e37098871db9fbb7ee0cc642df98ddbb9092b
workflow graph Varscan Workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: varscan/workflow.cwl

Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb