Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 3d280a2a4b4f1560f56991086f712fa22ddc3364 |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65 |
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hybrid_error_correction.cwl
Sub workflow used in the Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano) |
https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/animal-genome-assembly/hybrid_error_correction.cwl Branch/Commit ID: 0cd20e1be620ae0817a1aa4286d73b78c89809f0 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9 |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54 |
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CNV_pipeline
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
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rnatoy.cwl
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https://github.com/kevinsayers/cwl_rnatoy.git
Path: rnatoy.cwl Branch/Commit ID: 656e96e28f73b0ae3dcc18e76969a67b8b52e611 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 861d9baa067af98d794ba0ed4e43aa42e37d8a24 |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 32a040f94e9798bf91858da51598f0d68c35797d |
