Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 7ebb8d2757914d16520b00571a281e2ad86a42cf
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	tmb.cwl Workflow for calculating TMB tumor mutational burden on a single sample	https://github.com/mskcc/pluto-cwl.git Path: cwl/tmb.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13
	readme-assembly-workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_create_readme/readme-assembly-workflow.cwl Branch/Commit ID: aa375dcaa5ccfbb4e2aa4433d10948c641b044eb
	SARS_psm_workflow.cwl	https://github.com/adamscharlotte/CWL-workflow.git Path: SARS_psm_workflow.cwl Branch/Commit ID: f165c14d6d2e20a5133fc42251ae565fcbe520f6
	bgzip and index VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 2801ce53744a085580a8de91cd007c45146b51e8
	sequence (bam or fastqs) to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	final-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: final-workflow.cwl Branch/Commit ID: aa375dcaa5ccfbb4e2aa4433d10948c641b044eb