Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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fastq2fasta-create-bwaindex.cwl
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https://github.com/arvados/bh20-seq-resource.git
Path: workflows/fastq2fasta/fastq2fasta-create-bwaindex.cwl Branch/Commit ID: 30f3f8b0e9efbc954518fc8ea621b53c9591c83a |
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gatk-wf-with-interval.cwl
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl Branch/Commit ID: 36de0d12e1cc88d0fd7d6b401df6c6e403f8c809 |
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WGS processing workflow for single sample
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: ef89d0aabd706c59168537f69742e570373fdd84 |
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Vcf concordance evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: 8967e816cb89dd9349c8c6deff686aeb8b118f1c |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: d7481d03fa4b5b4630392540f598acfb100b421d |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: eb0092603bf57acb7bda08a06e4f2f1e2a8c9b6d |
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Cut-n-Run pipeline paired-end
Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed |
https://github.com/datirium/workflows.git
Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: a0b22644ca178b640fb74849d23b7c631022f0b5 |
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io-int-default-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-default-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b |