Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE - blacklist removal |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: e019c548a0bc2f17b13365abd213259887069978 |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb |
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Create a tile library (SGLF) for a given set of FastJ files
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https://github.com/curoverse/l7g.git
Path: cwl-version/tilelib/cwl/tiling_createsglf_chunk-scatter_v2.cwl Branch/Commit ID: e4076d3ef7deda1bcc57bfe5e3d1dc7bf58238ff |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117 |
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split-bams-by-strand-and-index.cwl
Split reads in a BAM file by strands and index forward and reverse output BAM files |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/quant/split-bams-by-strand-and-index.cwl Branch/Commit ID: e019c548a0bc2f17b13365abd213259887069978 |
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star_samtools_featurecounts_edger.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_featurecounts_edger.cwl Branch/Commit ID: ff0e5dfe44fb85900b5563ab340de8ad3d952eb5 |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
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Resolve duplicate/overlapping calls in the gVCFs in a named list
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https://github.com/curoverse/l7g.git
Path: cwl-version/clean/cwl/tiling_clean_gvcf_named.cwl Branch/Commit ID: e4076d3ef7deda1bcc57bfe5e3d1dc7bf58238ff |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
