Workflow: Create Genomic Collection for Bacterial Pipeline, ASN.1 input

Fetched 2024-11-23 19:28:36 GMT
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Inputs

ID Type Title Doc
entries File (Optional)
taxon_db File
seq_submit File (Optional)
gc_assm_name String

Steps

ID Runs Label Doc
Cache_Seq_entries
../progs/prime_cache.cwl (CommandLineTool)
prime_cache
Prepare_Seq_entries
../progs/prepare_seq_entry_input.cwl (CommandLineTool)
prepare_seq_entry_input
Extract_Assembly_Information
gc_get_molecules.cwl (CommandLineTool)
Extract Assembly Information I
Create_Assembly_From_Sequences
gc_create.cwl (CommandLineTool)
Create Assembly From Sequences
Extract_Assembly_Information_XML
gc_asm_xml_description.cwl (CommandLineTool)
Extract Assembly Information II

Outputs

ID Type Label Doc
order File
ids_out File
asncache Directory
seqid_list File
gencoll_asn File
stats_report File
submit_block_template File
Permalink: https://w3id.org/cwl/view/git/5b498b4c4f17bb8f17e6886aa4c5661d7aba34fc/genomic_source/wf_genomic_source_asn.cwl