Workflow: cluster_blastp_wnode and gpx_qdump combined
Fetched 2023-01-10 06:31:47 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/90a321ecf2d049330bcf0657cc4d764d2c3f42dd/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seg | String | ||
| lds2 | File | ||
| ofmt | String | ||
| dbsize | String | ||
| evalue | Float (Optional) | ||
| compart | Boolean | ||
| max_jobs | Integer | ||
| no_merge | Boolean | ||
| proteins | File | ||
| asn_cache | Directory[] | ||
| nogenbank | Boolean | ||
| threshold | Integer | ||
| word_size | Integer | ||
| input_jobs | File | ||
| blastdb_dir | Directory | ||
| align_filter | String | ||
| soft_masking | String | ||
| top_by_score | Integer | ||
| extra_coverage | Integer (Optional) | ||
| max_target_seqs | Integer | ||
| comp_based_stats | String | ||
| allow_intersection | Boolean | ||
| short_protein_threshold | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qdump |
../progs/gpx_qdump.cwl
(CommandLineTool)
|
gpx_qdump | |
| cluster_blastp_wnode |
../progs/cluster_blastp_wnode.cwl
(CommandLineTool)
|
cluster_blastp_wnode |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_align | File |
Permalink:
https://w3id.org/cwl/view/git/90a321ecf2d049330bcf0657cc4d764d2c3f42dd/task_types/tt_cluster_and_qdump.cwl
