Workflow: tt_hmmsearch_wnode.cwl

Fetched 2019-04-15 20:56:48 GMT
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Inputs

ID Type Title Doc
asn_cache Directory
hmms_tab File (Optional)
lds2 File
proteins File
seqids File
scatter_gather_nchunks String
hmm_path Directory

Steps

ID Runs Label Doc
hmmsearch_create_jobs
../progs/hmmsearch_create_jobs.cwl (CommandLineTool)
hmmsearch_create_jobs
split_jobs
../split_jobs/split.cwl (CommandLineTool)
cwl split wrapper
hmmsearch_wnode_qdump hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
collect_hmm_results
../split_jobs/cat_array_of_files.cwl (CommandLineTool)
file concatenation

Outputs

ID Type Label Doc
workdir Directory
jobs File
hmm_hits File
Permalink: https://w3id.org/cwl/view/git/83ef15482f405bc3d24f88cbf405ceffea9b3023/task_types/tt_hmmsearch_wnode.cwl