Workflow: GEM peak calling
Fetched 2023-01-15 00:43:47 GMT
Verified with cwltool version 3.1.20221201130942
This workflow execute peak calling using GEM
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Open Public License v1.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| k_max | Integer | ||
| k_min | Integer | ||
| format | String | ||
| infile | File | ||
| k_seqs | Integer | ||
| smooth | Integer | ||
| mapsize | Integer | ||
| threads | Integer | ||
| chromsize | File | ||
| genome_dir | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gem |
../../tools/gem/gem.cwl
(CommandLineTool)
|
GEM |
EM is a scientific software for studying protein-DNA interaction at high resolution using ChIP-seq/ChIP-exo data. |
| gzip_cat |
../../tools/basic/gzip.cwl
(CommandLineTool)
|
gzip |
Compress files |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| gem_out | Directory |
Permalink:
https://w3id.org/cwl/view/git/265440c63ab75d2451c90bcd116e725626e9a608/workflows/ChIP-Seq/gem.cwl
