Workflow: Non-Coding Bacterial Genes
Fetched 2023-01-11 12:26:09 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| taxon_db | File | ||
| asn_cache | Directory | ||
| model_path | File | ||
| rfam_stockholm | File | ||
| 16s_blastdb_dir | Directory | ||
| 23s_blastdb_dir | Directory | ||
| rfam_amendments | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| generate_5s |
wf_gcmsearch.cwl
(Workflow)
|
Run genomic CMsearch (5S rRNA) | |
| generate_16s |
wf_blastn.cwl
(Workflow)
|
BLAST against rRNA db | |
| generate_23s |
wf_blastn.cwl
(Workflow)
|
BLAST against rRNA db |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annotations_5s | File | ||
| annotations_16s | File | ||
| annotations_23s | File |
Permalink:
https://w3id.org/cwl/view/git/ba3e313e646f1dd3da3f5f93a1e6cb7f252be97b/bacterial_noncoding/wf_bacterial_noncoding.cwl
