Workflow: deal_with_functional_annotation.cwl
Fetched 2024-07-08 18:11:32 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| cds | File | ||
| rna | File | ||
| fasta | File | ||
| ko_file | File | ||
| IPS_table | File | ||
| go_config | File (Optional) | ||
| ips_header | String | ||
| crisprcas_gff | File | ||
| diamond_table | File | ||
| hmmscan_table | File | ||
| output_gff_gz | File | ||
| diamond_header | String | ||
| crisprcas_fasta | File | ||
| eggnog_orthologs | File | ||
| hmmsearch_header | String | ||
| output_gff_index | File | ||
| eggnog_annotations | File | ||
| antismash_geneclusters_txt | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| post_processing | |||
| compression_func_ann |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/utils/pigz/gzip.cwl
(CommandLineTool)
|
||
| move_to_functional_annotation_folder |
/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/utils/return_directory/return_directory.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| stats | Directory | ||
| summary_antismash | File (Optional) | ||
| functional_annotation_folder | Directory |
Permalink:
https://w3id.org/cwl/view/git/337033417c49dcf4ab394aba1ec517b97637da13/workflows/subworkflows/assembly/deal_with_functional_annotation.cwl
