Workflow: exome alignment with qc

Fetched 2019-06-27 12:06:21 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
reference File
omni_vcf File
bait_intervals File
mills File
dbsnp File
readgroups String[]
bams File[]
target_intervals File
known_indels File

Steps

ID Runs Label Doc
qc Exome QC workflow
alignment Unaligned BAM to BQSR and VCF

Outputs

ID Type Label Doc
per_target_coverage_metrics File
hs_metrics File
alignment_summary_metrics File
verify_bam_id_metrics File
insert_size_metrics File
verify_bam_id_depth File
flagstats File
bam File
Permalink: https://w3id.org/cwl/view/git/8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb/exome_alignment.cwl