Workflow: Unaligned to aligned BAM

Fetched 2019-05-20 22:40:43 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
reference File
readgroup String
bam File

Steps

ID Runs Label Doc
align_and_tag
align_and_tag.cwl (CommandLineTool)
align with bwa_mem and tag
revert_to_fastq
revert_to_fastq.cwl (CommandLineTool)
revert to fastq

Outputs

ID Type Label Doc
tagged_bam File
Permalink: https://w3id.org/cwl/view/git/8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb/boa/align.cwl