Workflow: Add snv and indel bam-readcount files to a vcf

Fetched 2021-07-22 08:51:51 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
data_type
indel_bam_readcount_tsv File
vcf File
snv_bam_readcount_tsv File
sample_name String

Steps

ID Runs Label Doc
add_snv_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf
add_indel_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf

Outputs

ID Type Label Doc
annotated_bam_readcount_vcf File
Permalink: https://w3id.org/cwl/view/git/4aba7c6591c2f1ebd827a36d325a58738c429bea/definitions/subworkflows/vcf_readcount_annotator.cwl