{"@id":"https://w3id.org/cwl/view/git/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","retrievedFrom":{"repoUrl":"https://github.com/fgomez02/analysis-workflows.git","branch":"9c9e6a6a48eb321804ce772a2c2c12b4f2f32529","path":"definitions/subworkflows/bgzip_and_index.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/fgomez02/analysis-workflows/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","url":"https://github.com/fgomez02/analysis-workflows/blob/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl"},"retrievedOn":"2023-01-14T16:08:51.625+00:00","lastCommit":"9c9e6a6a48eb321804ce772a2c2c12b4f2f32529","label":"bgzip and index VCF","inputs":{"vcf":{"type":"File"}},"outputs":{"indexed_vcf":{"type":"File"}},"steps":{"bgzip":{"label":"bgzip VCF","run":"../tools/bgzip.cwl","runType":"COMMANDLINETOOL","sources":{"bgzip":{"sourceIDs":["vcf"]}}},"index":{"label":"vcf index","run":"../tools/index_vcf.cwl","runType":"COMMANDLINETOOL","sources":{"index":{"sourceIDs":["bgzip"]}}}},"cwltoolVersion":"3.1.20221201130942","visualisationDot":"digraph workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"vcf\" [fillcolor=\"#94DDF4\",label=\"vcf\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"indexed_vcf\" [fillcolor=\"#94DDF4\",label=\"indexed_vcf\"];\n  }\n  \"bgzip\" [label=\"bgzip VCF\"];\n  \"index\" [label=\"vcf index\"];\n  \"vcf\" -> \"bgzip\" [label=\"file\"];\n  \"bgzip\" -> \"index\" [label=\"vcf\"];\n  \"index\" -> \"indexed_vcf\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/fgomez02/analysis-workflows/blob/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","visualisationPng":"/graph/png/github.com/fgomez02/analysis-workflows/blob/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","visualisationSvg":"/graph/svg/github.com/fgomez02/analysis-workflows/blob/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","roBundle":"/robundle/github.com/fgomez02/analysis-workflows/blob/9c9e6a6a48eb321804ce772a2c2c12b4f2f32529/definitions/subworkflows/bgzip_and_index.cwl","licenseName":"MIT License"}