Workflow: chipseq-gen-bigwig.cwl
Fetched 2024-12-12 12:30:57 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| paired | Boolean |
True if paired end experiment, fragmentsize |
|
| mapped_reads | Integer |
Mapped reads number, tagsmapped |
|
| fragment_size | Integer |
Fragment size, |
|
| bam_bai_pair_file | File |
BAM file with index BAI file |
|
| chrom_length_file | File |
Chromosome length file |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bam_to_bigwig |
bam-bedgraph-bigwig.cwl
(Workflow)
|
Workflow converts input BAM file into bigWig and bedGraph files |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bigwig_file | File |
bigWig generated file |
Permalink:
https://w3id.org/cwl/view/git/69623308d3b5577a4672b1d5aaf104ad1a259b20/subworkflows/chipseq-gen-bigwig.cwl
