{"@id":"https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","retrievedFrom":{"repoUrl":"https://github.com/common-workflow-library/legacy.git","branch":"767d700e602805112a4c953d166e570cddfa2605","path":"workflows/kallisto-demo.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/common-workflow-library/legacy/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","url":"https://github.com/common-workflow-library/legacy/blob/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl"},"retrievedOn":"2023-01-03T19:07:19.040+00:00","lastCommit":"767d700e602805112a4c953d166e570cddfa2605","label":"kallisto-demo.cwl","inputs":{"reads":{"type":"File[]"},"transcripts":{"type":"File[]"}},"outputs":{"quants":{"type":"File"}},"steps":{"indexing":{"run":"../tools/kallisto-index.cwl","runType":"COMMANDLINETOOL","sources":{"indexing":{"sourceIDs":["transcripts"]}}},"quantifying":{"run":"../tools/kallisto-quant.cwl","runType":"COMMANDLINETOOL","sources":{"quantifying":{"sourceIDs":["reads"]},"https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/index":{"sourceIDs":["indexing"]}}}},"dockerLink":"https://hub.docker.com/r/insilicodb/kallisto","cwltoolVersion":"3.1.20221201130942","visualisationDot":"digraph workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"reads\" [fillcolor=\"#94DDF4\",label=\"reads\"];\n    \"transcripts\" [fillcolor=\"#94DDF4\",label=\"transcripts\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"quants\" [fillcolor=\"#94DDF4\",label=\"quants\"];\n  }\n  \"indexing\" [label=\"indexing\"];\n  \"quantifying\" [label=\"quantifying\"];\n  \"transcripts\" -> \"indexing\" [label=\"fasta-files\"];\n  \"reads\" -> \"quantifying\" [label=\"fastqs\"];\n  \"indexing\" -> \"quantifying\" [label=\"index\"];\n  \"quantifying\" -> \"quants\";\n}\n","licenseLink":"https://spdx.org/licenses/Apache-2.0","permalink":"https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/common-workflow-library/legacy/blob/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","visualisationPng":"/graph/png/github.com/common-workflow-library/legacy/blob/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","visualisationSvg":"/graph/svg/github.com/common-workflow-library/legacy/blob/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","roBundle":"/robundle/github.com/common-workflow-library/legacy/blob/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl","licenseName":"Apache License 2.0"}