Workflow: limit_detection.cwl

Fetched 2018-12-15 12:08:15 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
exec_path String
fqSeqs https://w3id.org/cwl/view/git/d0be8f7f06973766c74497f05be7f0150b680610/limit_detection/readPair.yml#FilePair[]
out_fn String

Steps

ID Runs Label Doc
unpack_output
limit_detection.cwl#unpack_output/de56dd3a-1a59-4d32-80a9-e72fcf067050 (ExpressionTool)
collect_mlst_res
limit_detection.cwl#collect_mlst_res/5f80f8b9-8ca1-41a0-ae21-0ffda9670884 (CommandLineTool)
mlst
mlst.cwl (CommandLineTool)
spades-fast
spades-fast.cwl (CommandLineTool)
subsample
seqtk_sample_PE.cwl (Workflow)
rename_contigs
limit_detection.cwl#rename_contigs/d97a302c-dec3-47ab-83c7-e69ce8f22af1 (CommandLineTool)

Outputs

ID Type Label Doc
mlst_collection File
Permalink: https://w3id.org/cwl/view/git/d0be8f7f06973766c74497f05be7f0150b680610/limit_detection/limit_detection.cwl