Workflow: hc-distr.cwl
Fetched 2024-04-23 22:49:24 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 2-clause "Simplified" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| qcal | File[] (Optional) | ||
| dbsnp | File (Optional) | ||
| given | File (Optional) | ||
| shard | String[] | ||
| ploidy | Integer (Optional) | ||
| phasing | Integer (Optional) | ||
| threads | Integer (Optional) | ||
| gq_bands | String (Optional) | ||
| interval | File (Optional) | ||
| call_conf | Double (Optional) | ||
| emit_conf | Double (Optional) | ||
| emit_mode | String (Optional) | ||
| input_bam | File[] | ||
| reference | File | ||
| annotation | String[] (Optional) | ||
| output_file | String | ||
| prune_factor | Integer (Optional) | ||
| min_base_qual | Integer (Optional) | ||
| trim_soft_clip | Boolean (Optional) | ||
| pcr_indel_model | String (Optional) | ||
| advanced_options | String[] (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| hc |
../algo/hc.cwl
(CommandLineTool)
|
||
| merge |
../algo/hc.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/d20382adfe7285cb517a25d95d2bcb7586546e23/stage/hc-distr.cwl
