Workflow: cmsearch-multimodel.cwl

Fetched 2019-06-27 12:33:06 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
clan_info File
query_sequences File
covariance_models File[]

Steps

ID Runs Label Doc
remove_overlaps
../tools/cmsearch-deoverlap.cwl (CommandLineTool)
remove lower scoring overlaps from cmsearch --tblout files.

https://github.com/nawrockie/cmsearch_tblout_deoverlap/blob/master/00README.txt

cmsearch
../tools/infernal-cmsearch.cwl (CommandLineTool)
search sequence(s) against a covariance model database

http://eddylab.org/infernal/Userguide.pdf

concatenate_matches
../tools/concatenate.cwl (CommandLineTool)

Outputs

ID Type Label Doc
matches File
Permalink: https://w3id.org/cwl/view/git/85155424fa5654526517369be2fa479a7d4d90de/workflows/cmsearch-multimodel.cwl