Workflow: Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX
Fetched 2024-11-23 06:25:02 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| tmpdir | String | ||
| in_file | File | Zipped Bruker NMR data directory | |
| out_file | String | ||
| dummyparameters | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| unzip |
unzip.cwl
(CommandLineTool)
|
Extract the entire content of a ZIP archive | |
| convert |
bruker2jcamp.cwl
(CommandLineTool)
|
Uses Bruker TopSpin to convert NMR data to JCAMP-DX |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| outfile | File [Mass spectrometry data format] | JCAMP-DX spectrum file |
Permalink:
https://w3id.org/cwl/view/git/da8a0496d4fbe1815dc978a5ceaa183b7cb73cf1/cwl/zipped2bruker2jcamp.cwl
