Workflow: integrity.cwl
Fetched 2023-01-12 06:37:25 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bai | File | ||
| bam | File | ||
| job_uuid | String | ||
| input_state | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bai_ls_l |
../../tools/ls_l.cwl
(CommandLineTool)
|
||
| bam_ls_l |
../../tools/ls_l.cwl
(CommandLineTool)
|
||
| bai_md5sum |
../../tools/md5sum.cwl
(CommandLineTool)
|
||
| bai_sha256 |
../../tools/sha256sum.cwl
(CommandLineTool)
|
||
| bam_md5sum |
../../tools/md5sum.cwl
(CommandLineTool)
|
||
| bam_sha256 |
../../tools/sha256sum.cwl
(CommandLineTool)
|
||
| merge_sqlite |
../../tools/merge_sqlite.cwl
(CommandLineTool)
|
||
| bai_integrity_to_db |
../../tools/integrity_to_sqlite.cwl
(CommandLineTool)
|
||
| bam_integrity_to_db |
../../tools/integrity_to_sqlite.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/workflows/bamfastq_align/integrity.cwl
