{"@id":"https://w3id.org/cwl/view/git/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","retrievedFrom":{"repoUrl":"https://github.com/FarahZKhan/scalability-reproducibility-chapter.git","branch":"f0b553d37e4255a3291393948f3e308bd88ed301","path":"CWL/workflow.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/FarahZKhan/scalability-reproducibility-chapter/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","url":"https://github.com/FarahZKhan/scalability-reproducibility-chapter/blob/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl"},"retrievedOn":"2023-01-14T21:12:16.280+00:00","lastCommit":"f0b553d37e4255a3291393948f3e308bd88ed301","label":"workflow.cwl","inputs":{"clusters":{"label":"A directory of directories","doc":"Each sub-directory should contain a single protein (aa.fa) and a single\nnucleotide sequence (nt.fa) file. The name of the sub-directory will be\npreserved.\n","type":"Directory"}},"outputs":{"names":{"type":"String[]"},"results":{"type":"File[]"}},"steps":{"alignment":{"run":"per_cluster_workflow.cwl","runType":"WORKFLOW","sources":{"alignment":{"sourceIDs":["extract_clusters"]},"https://w3id.org/cwl/view/git/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl#alignment/nucleotides":{"sourceIDs":["extract_clusters"]}}},"extract_clusters":{"run":"workflow.cwl#extract_clusters/8072356b-acd9-49b1-b6d8-13807614f34f","runType":"EXPRESSIONTOOL","sources":{"extract_clusters":{"sourceIDs":["clusters"]}}}},"cwltoolVersion":"3.1.20221201130942","visualisationDot":"digraph workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"clusters\" [fillcolor=\"#94DDF4\",label=\"A directory of directories\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"names\" [fillcolor=\"#94DDF4\",label=\"names\"];\n    \"results\" [fillcolor=\"#94DDF4\",label=\"results\"];\n  }\n  \"extract_clusters\" [label=\"extract_clusters\"];\n  \"alignment\" [label=\"alignment\", fillcolor=\"#F3CEA1\"];\n  \"clusters\" -> \"extract_clusters\" [label=\"clusters\"];\n  \"extract_clusters\" -> \"alignment\" [label=\"proteins_to_align\"];\n  \"extract_clusters\" -> \"alignment\" [label=\"nucleotides\"];\n  \"extract_clusters\" -> \"names\";\n  \"alignment\" -> \"results\";\n}\n","permalink":"https://w3id.org/cwl/view/git/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/FarahZKhan/scalability-reproducibility-chapter/blob/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","visualisationPng":"/graph/png/github.com/FarahZKhan/scalability-reproducibility-chapter/blob/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","visualisationSvg":"/graph/svg/github.com/FarahZKhan/scalability-reproducibility-chapter/blob/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl","roBundle":"/robundle/github.com/FarahZKhan/scalability-reproducibility-chapter/blob/f0b553d37e4255a3291393948f3e308bd88ed301/CWL/workflow.cwl"}