Workflow: func_summaries.cwl
Fetched 2025-10-08 12:18:34 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| cds | File | ||
| rna | File | ||
| ko_file | String | ||
| pfam_annotation | File | ||
| hmmscan_annotation | File | ||
| antismash_gene_clusters | File (Optional) | ||
| interproscan_annotation | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| write_summaries |
../../tools/summaries/write_summaries.cwl
(CommandLineTool)
|
gather summary file from InterProScan | |
| functional_stats |
../../tools/summaries/functional_stats.cwl
(CommandLineTool)
|
generate all functional stats and orf stats |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| stats | Directory | ||
| summary_ko | File | ||
| summary_ips | File | ||
| summary_pfam | File | ||
| summary_antismash | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/49ae257c560e71d2946290d1705b2912fd81f76f/workflows/subworkflows/func_summaries.cwl
