Workflow: MashMap
Fetched 2024-04-19 13:10:16 GMT
Verified with cwltool version 3.1.20230201224320
MashMap sub-worklow
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reference | File (Optional) | ||
| input_fastas | File[] [FASTA] |
FASTA files |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| mashmap |
mashmap.cwl
(CommandLineTool)
|
MashMap |
MashMap is an approximate long read or contig mapper based on Jaccard similarity |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_table | File[] |
Permalink:
https://w3id.org/cwl/view/git/3708071d71b19e72c71c06dd2c8aa3c5a0eb232c/cwl/src/Tools/MashMap/mashmap_swf.cwl
