Workflow: hi-c-processing-pairs.cwl

Fetched 2019-05-20 22:32:24 GMT
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Inputs

ID Type Title Doc
nres Integer
max_split_cooler Integer
restriction_file File (Optional)
higlass Boolean
custom_res String
mapqfilter_juicer Integer
nofrag Boolean
juicer_res Boolean
chromsizes File
chunksize Integer
input_pairs File[] (Optional)
nthreads Integer
min_res Integer
maxmem String

Steps

ID Runs Label Doc
addfragtopairs
addfragtopairs.cwl (CommandLineTool)
add-hic-normvector-to-mcool
add-hic-normvector-to-mcool.cwl (CommandLineTool)
cooler
cooler.cwl (CommandLineTool)
merge-pairs
merge-pairs.cwl (CommandLineTool)
cool2mcool
cool2mcool.cwl (CommandLineTool)
extract-mcool-normvector-for-juicebox
extract-mcool-normvector-for-juicebox.cwl (CommandLineTool)
pairs2hic
pairs2hic.cwl (CommandLineTool)

Outputs

ID Type Label Doc
merged_pairs File
hic File
mcool File
cooler_normvector File
Permalink: https://w3id.org/cwl/view/git/46dbd4c38119ef8a2d00b44678e45dafd430f5fa/cwl_awsem_v1/hi-c-processing-pairs.cwl