Workflow: hi-c-processing-bam.cwl

Fetched 2019-09-19 11:35:58 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
nthreads_merge Integer
input_bams File[]
nthreads_parse_sort Integer
chromsize File

Steps

ID Runs Label Doc
pairsam-parse-sort
pairsam-parse-sort.cwl (CommandLineTool)
pairsam-markasdup
pairsam-markasdup.cwl (CommandLineTool)
pairsam-merge
pairsam-merge.cwl (CommandLineTool)
pairsam-filter
pairsam-filter.cwl (CommandLineTool)

Outputs

ID Type Label Doc
annotated_bam File
filtered_pairs File
Permalink: https://w3id.org/cwl/view/git/46dbd4c38119ef8a2d00b44678e45dafd430f5fa/cwl_awsem_v1/hi-c-processing-bam.cwl