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	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 60.11 313.81 56.85 303.84 52 286.4 52 271 52 271 52 271 52 134 52 110.46 106.12 99.78 157.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 157.76 97.41 164.52 94.36 157.33 92.53 ",
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		label=reference_sizes,
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	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 726 313.58 726 306.52 726 296.24 726 287.55 ",
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		pos="e,726,279.26 726,313.58 726,306.52 726,296.24 726,287.55"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1078.35 313.59 1066.72 310.59 1053.31 307.37 1041 305 980.64 293.35 912.95 285.4 855.84 280.13 ",
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	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1201.2 313.62 1192.93 310.44 1183.14 307.09 1174 305 1115.58 291.64 965.9 282.07 855.55 276.55 ",
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		lp="884,292.5",
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		pos="250,135",
		rects="59,125.5,441,144.5",
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	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 174.05 313.71 175.24 303.63 177 286.1 177 271 177 271 177 271 177 179 177 163.84 188.83 153.92 202.96 147.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 203.54 149.88 209.11 144.98 201.7 145.34 ",
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		label=assay_non_cpg_sites,
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	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 465.5 313.51 502.95 306.35 550.5 297.24 551 297 556.72 294.32 556.17 290.43 562 288 569.53 284.87 581.82 282.29 \
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		label=adapter_min_overlap,
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		label=max_uncalled,
		lp="696.5,292.5",
		pos="e,693.79,279.46 603.88,313.61 617.44,309.03 634.26,303.07 649,297 657.64,293.44 659.27,291.32 668,288 673.66,285.84 679.72,283.8 \
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	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 510.5 125.5 510.5 144.5 611.5 144.5 611.5 125.5 ",
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		label="Bisulfite QC tools",
		pos="561,135",
		rects="510.5,125.5,611.5,144.5",
		width=1.4028];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1403.42 313.58 1387.09 305.38 1367 291.18 1367 271 1367 271 1367 271 1367 179 1367 141.57 805.27 136.67 619.71 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1395.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
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	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 305.69 313.55 314.9 310.32 325.83 306.95 336 305 391.98 294.28 408.67 310.69 464 297 473.46 294.66 474.55 290.38 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.42 278.51 603.27 275.67 596.15 273.62 ",
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		label=reference_index,
		lp="517,292.5",
		pos="e,604.79,275.59 305.69,313.55 314.9,310.32 325.83,306.95 336,305 391.98,294.28 408.67,310.69 464,297 473.46,294.66 474.55,290.38 \
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 509 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="509,180",
		rects="467.5,170.5,550.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 308.67 313.59 362.63 295 487.34 250.76 500 235 508.36 224.59 510.25 209.35 510.26 197.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 512.71 197.73 510.01 190.82 507.82 197.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507 245.6 0 40 9 -reference ",
		label=reference,
		lp="507,247.5",
		pos="e,509.95,189.31 308.67,313.59 362.63,295 487.34,250.76 500,235 508.36,224.59 510.25,209.35 510.26,197.71"];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 282.69 313.72 281.2 303.65 279 286.12 279 271 279 271 279 271 279 179 279 168.17 272.59 158.02 265.8 150.3 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 299 223.1 0 40 9 -reference ",
		label=reference,
		lp="299,225",
		pos="e,260.14,144.44 282.69,313.72 281.2,303.65 279,286.12 279,271 279,271 279,271 279,179 279,168.17 272.59,158.02 265.8,150.3"];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 13 308.19 313.55 316.9 310.65 326.84 307.51 336 305 391.12 289.91 460 328.15 460 271 460 271 460 271 460 179 460 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 502.68 143.37 509.02 139.52 501.66 138.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 480 223.1 0 40 9 -reference ",
		label=reference,
		lp="480,225",
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 383 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="383,180",
		rects="313,170.5,453,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 4 289.9 313.6 306.17 290.43 351.86 225.35 372.57 195.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 374.37 197.55 376.39 190.42 370.36 194.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 359 245.6 0 40 9 -reference ",
		label=reference,
		lp="359,247.5",
		pos="e,377.26,189.18 289.9,313.6 306.17,290.43 351.86,225.35 372.57,195.86"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 266.4 80.5 278.68 74.14 295.65 65.35 309.39 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.2 60.57 315.29 55.17 307.95 56.22 ",
		pos="e,316.64,54.478 266.4,80.505 278.68,74.144 295.65,65.351 309.39,58.233"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 514 215.5 514 234.5 624 234.5 624 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 569 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="569,225",
		rects="514,215.5,624,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 694.98 260.5 670.04 253.67 634.85 244.03 608 236.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 608.81 234.36 601.41 234.88 607.52 239.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 672.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="672.5,247.5",
		pos="e,599.95,234.48 694.98,260.5 670.04,253.67 634.85,244.03 608,236.68"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 508.95 170.55 508.63 153.15 506.69 112.25 496 80 493.86 73.56 490.48 66.94 487.16 61.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 489.37 60.18 483.59 55.53 485.2 62.77 ",
		pos="e,482.79,54.247 508.95,170.55 508.63,153.15 506.69,112.25 496,80 493.86,73.557 490.48,66.94 487.16,61.275"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 7 467.72 172.12 463.43 171.4 459.13 170.69 455 170 405.89 161.84 350.16 152.59 309.22 145.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 309.77 143.42 302.46 144.69 308.97 148.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 410.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="410.5,157.5",
		pos="e,300.97,144.44 467.72,172.12 463.43,171.4 459.13,170.69 455,170 405.89,161.84 350.16,152.59 309.22,145.81"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 519.27 170.5 526.4 164.62 536.04 156.64 544.26 149.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 545.75 151.79 549.58 145.44 542.63 148.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 545.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="545.5,157.5",
		pos="e,550.75,144.48 519.27,170.5 526.4,164.62 536.04,156.64 544.26,149.84"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 326.44 125.68 332.63 123.38 338.58 120.53 344 117 354.74 110 372.78 80.23 383.42 61.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 385.45 62.92 386.74 55.62 381.18 60.52 ",
		pos="e,387.48,54.3 326.44,125.68 332.63,123.38 338.58,120.53 344,117 354.74,110 372.78,80.235 383.42,61.537"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 250 125.71 250 120.59 250 113.85 250 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 252.45 107.78 250 100.78 247.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 296.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="296.5,112.5",
		pos="e,250,99.265 250,125.71 250,120.59 250,113.85 250,107.67"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 4 560.14 125.56 558.66 111.14 555.63 81.48 553.71 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 556.15 62.5 553 55.79 551.28 63 ",
		pos="e,552.85,54.284 560.14,125.56 558.66,111.14 555.63,81.476 553.71,62.727"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 376.5 80.5 376.5 99.5 495.5 99.5 495.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 436 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="436,90",
		rects="376.5,80.5,495.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 410.29 170.6 422.21 165.34 434.85 157.19 441 145 446.89 133.33 444.92 118.43 441.88 107.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 444.24 106.57 439.8 100.63 439.57 108.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 454.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="454.5,135",
		pos="e,439.35,99.19 410.29,170.6 422.21,165.34 434.85,157.19 441,145 446.89,133.33 444.92,118.43 441.88,107.24"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 436 80.71 436 75.59 436 68.85 436 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.45 62.78 436 55.78 433.55 62.78 ",
		pos="e,436,54.265 436,80.709 436,75.593 436,68.848 436,62.666"];
	merge -> pileup	[_draw_="c 7 -#000000 B 7 557.27 215.72 553.36 212.96 548.99 209.85 545 207 539.27 202.9 533.04 198.41 527.4 194.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.99 192.46 521.88 190.35 526.12 196.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 554.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="554.5,202.5",
		pos="e,520.65,189.46 557.27,215.72 553.36,212.96 548.99,209.85 545,207 539.27,202.9 533.04,198.41 527.4,194.34"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 568.23 215.56 566.92 201.14 564.23 171.48 562.52 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 564.96 152.54 561.89 145.79 560.08 152.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 574.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="574.5,180",
		pos="e,561.75,144.28 568.23,215.56 566.92,201.14 564.23,171.48 562.52,152.73"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 532.25 215.5 502.19 208.56 459.57 198.7 427.57 191.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.52 189.01 421.15 189.82 427.41 193.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 501.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="501.5,202.5",
		pos="e,419.67,189.48 532.25,215.5 502.19,208.56 459.57,198.7 427.57,191.3"];
}