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	sequence_cache -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 13 1814.76 403.58 1805.65 400.44 1794.94 397.12 1785 395 1729.95 383.24 1663 417.29 1663 361 1663 361 1663 361 1663 \
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		label=asn_cache,
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		label=selenoproteins,
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	wp_hashes -> Name_by_WPs	[_draw_="c 7 -#000000 B 13 136.01 403.61 142.35 400.84 149.47 397.76 156 395 192.72 379.48 239 400.86 239 361 239 361 239 361 239 179 239 \
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	thresholds -> Run_GeneMark	[_draw_="c 7 -#000000 B 10 1356.4 403.59 1350.04 400.69 1342.77 397.54 1336 395 1324.68 390.75 1320.71 392.62 1310 387 1280.44 371.49 1250.98 \
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	thresholds -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 7 1376.14 403.51 1378.52 395.78 1383.1 384.6 1391 378 1393.13 376.22 1395.45 374.62 1397.88 373.19 ",
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	scatter_gather_nchunks -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 19 254.91 403.53 266.81 400.57 280.47 397.38 293 395 347 384.72 538 415.97 538 361 538 361 538 361 538 291.5 538 \
276.35 538.82 269 551 260 566.26 248.72 622.19 265.01 636 252 639.6 248.61 648.07 183.83 651.97 152.59 ",
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538.82,269 551,260 566.26,248.72 622.19,265.01 636,252 639.6,248.61 648.07,183.83 651.97,152.59"];
	naming_hmms_combined -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 13 397.66 403.52 410.74 400.4 426.01 397.12 440 395 487.61 387.78 654 409.15 654 361 654 361 654 361 654 179 654 \
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		label=hmm_path,
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	raw_seqs -> Run_GeneMark	[_draw_="c 7 -#000000 B 10 899.53 403.52 905.66 400.33 912.98 396.99 920 395 953.95 385.36 964.33 393.61 999 387 1070.07 373.44 1150.15 343.98 \
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	hmm_params -> Run_GeneMark	[_draw_="c 7 -#000000 B 19 574.38 403.68 582.47 400.51 592.06 397.15 601 395 630.59 387.9 638.85 391.15 669 387 773.31 372.62 798.21 360.24 \
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		label=hmm_params,
		lp="930.5,360",
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	hmms_tab -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 22 490.44 403.55 497.17 400.28 505.27 396.87 513 395 528.68 391.2 645.96 397.74 658 387 685.59 362.39 655.02 337.84 \
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		label=hmms_tab,
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	selenoproteins_db -> Run_GeneMark_Post	[_draw_="c 7 -#000000 B 13 1089.85 403.58 1098.06 399.61 1106.81 394.15 1113 387 1129.76 367.66 1119.69 354.86 1133 333 1147.07 309.89 1154.32 \
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		label=selenoproteins_db,
		lp="1171,337.5",
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	selenoproteins_db -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 13 1091.73 403.58 1101.66 400.48 1113.27 397.19 1124 395 1155.12 388.66 1163.86 393.23 1195 387 1209.07 384.19 1211.86 \
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		label=selenoproteins_db,
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	good_ab_initio_annotations -> PGAP_plus_ab_initio	[_draw_="c 7 -#000000 B 10 676.53 403.87 675.71 391.92 673.64 368.98 669 350 663.94 329.31 651.52 274.59 636 260 622.43 247.24 604.27 239.25 \
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	good_ab_initio_annotations -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 13 711.06 403.54 725.18 400.35 741.8 397.01 757 395 823.19 386.26 840.34 390.66 907 387 977.67 383.12 995.28 380.97 \
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	annotation -> Run_GeneMark	[_draw_="c 7 -#000000 B 7 1220.49 403.74 1216.09 399.28 1211.33 393.39 1209 387 1202.36 368.78 1207.85 346.5 1213.17 331.81 ",
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	annotation -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 7 1252.45 403.63 1273.7 395.99 1306.64 384.87 1336 378 1347.61 375.28 1360.01 372.9 1372.17 370.85 ",
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	hmm_aligns -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 7 1527.34 403.52 1502.45 396.6 1471.27 387.84 1470 387 1465.76 384.2 1461.97 380.28 1458.81 376.33 ",
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	genemark_path -> Run_GeneMark	[_draw_="c 7 -#000000 B 22 825.61 403.54 834.38 400.5 844.56 397.27 854 395 877.16 389.44 883.82 392.5 907 387 930.66 381.39 936.24 378.55 \
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		label=genemark_path,
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	taxon_db -> Name_by_WPs	[_draw_="c 7 -#000000 B 10 47.53 403.7 48.12 393.61 49 376.06 49 361 49 361 49 361 49 179 49 139.54 175.81 134.7 245.46 135.02 ",
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	prot_aligns -> Find_Best_Evidence_Alignments	[_draw_="c 7 -#000000 B 13 1664.49 403.52 1649.49 400.4 1631.99 397.12 1616 395 1590.39 391.6 1524.22 396.01 1500 387 1493.75 384.68 1493.76 \
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		label=align,
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	Name_by_WPs -> Name_by_WPs_names	[_draw_="c 7 -#000000 B 4 278.4 125.56 257.29 110.21 212.48 77.62 187.25 59.27 ",
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	Run_GeneMark -> Run_GeneMark_Post	[_draw_="c 7 -#000000 B 7 1238.52 305.69 1246.43 300.95 1252.85 294.65 1248 288 1247.02 286.65 1245.93 285.41 1244.75 284.26 ",
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		label=pre_annot,
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	Run_GeneMark -> Run_GeneMark_Post	[_draw_="c 7 -#000000 B 7 1187.32 306.13 1183.26 303.83 1179.62 300.85 1177 297 1174.49 293.31 1175.39 289.35 1177.78 285.65 ",
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		label=genemark_annot,
		lp="1212,292.5",
		pos="e,1183.3,279.41 1187.3,306.13 1183.3,303.83 1179.6,300.85 1177,297 1174.5,293.31 1175.4,289.35 1177.8,285.65"];
	Extract_Model_Proteins	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 476.5 170.5 476.5 189.5 567.5 189.5 567.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 522 177.5 0 75 15 -protein_extract ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=protein_extract,
		pos="522,180",
		rects="476.5,170.5,567.5,189.5",
		width=1.2639];
	Extract_Model_Proteins -> Extract_Model_Proteins_proteins	[_draw_="c 7 -#000000 B 7 514.64 170.52 512.8 167.95 511.05 165 510 162 498.2 128.37 499.35 85.91 501.2 62.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.63 63.17 501.83 55.97 498.75 62.72 ",
		pos="e,501.97,54.463 514.64,170.52 512.8,167.95 511.05,165 510,162 498.2,128.37 499.35,85.913 501.2,62.828"];
	Extract_Model_Proteins -> Extract_Model_Proteins_seqids	[_draw_="c 7 -#000000 B 10 518.63 170.68 511.14 150.67 495.66 99.4 521 71 531.42 59.32 575.52 65.38 591 63 603.87 61.02 617.73 58.52 630.55 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 630.92 58.48 637.32 54.73 629.98 53.67 ",
		pos="e,638.81,54.44 518.63,170.68 511.14,150.67 495.66,99.402 521,71 531.42,59.317 575.52,65.376 591,63 603.87,61.025 617.73,58.524 630.55,\
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	Extract_Model_Proteins -> Extract_Model_Proteins_lds2	[_draw_="c 7 -#000000 B 10 523.5 170.91 524.88 165.32 527.45 158.01 532 153 550.7 132.4 562.16 135.33 588 125 662.32 95.28 752.36 70.04 804.03 \
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		pos="e,811.99,54.476 523.5,170.91 524.88,165.32 527.45,158.01 532,153 550.7,132.4 562.16,135.33 588,125 662.32,95.283 752.36,70.043 804.03,\
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	Extract_Model_Proteins -> Name_by_WPs	[_draw_="c 7 -#000000 B 7 476.86 178.93 440.62 177.86 388.75 174.05 345 162 333.43 158.81 321.3 153.33 311.38 148.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 312.61 146.11 305.29 144.97 310.31 150.43 ",
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		label=proteins,
		lp="362,157.5",
		pos="e,303.95,144.26 476.86,178.93 440.62,177.86 388.75,174.05 345,162 333.43,158.81 321.3,153.33 311.38,148.22"];
	Extract_Model_Proteins -> Name_by_WPs	[_draw_="c 7 -#000000 B 4 476.72 170.61 435.64 162.99 375.42 151.83 334.56 144.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 335.22 141.89 327.89 143.02 334.33 146.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 436 155.6 0 18 4 -lds2 ",
		label=lds2,
		lp="436,157.5",
		pos="e,326.41,142.75 476.72,170.61 435.64,162.99 375.42,151.83 334.56,144.26"];
	Extract_Model_Proteins -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 7 525.91 170.57 529.11 164.66 534.21 157.11 541 153 548.47 148.48 564.16 145.05 581.54 142.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.51 144.99 588.12 141.61 580.85 140.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 550 155.6 0 18 4 -lds2 ",
		label=lds2,
		lp="550,157.5",
		pos="e,589.62,141.4 525.91,170.57 529.11,164.66 534.21,157.11 541,153 548.47,148.48 564.16,145.05 581.54,142.51"];
	Extract_Model_Proteins -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 10 540.33 170.59 545.5 168.02 551.06 165.05 556 162 561.67 158.5 561.91 155.71 568 153 573.45 150.57 579.24 148.49 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 585.71 149.09 591.8 144.85 584.4 144.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 585 155.6 0 34 8 -proteins ",
		label=proteins,
		lp="585,157.5",
		pos="e,593.26,144.44 540.33,170.59 545.5,168.02 551.06,165.05 556,162 561.67,158.5 561.91,155.71 568,153 573.45,150.57 579.24,148.49 \
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	Extract_Model_Proteins -> Search_Naming_HMMs	[_draw_="c 7 -#000000 B 10 567.43 172.33 578.08 169.86 589.17 166.51 599 162 605.06 159.22 605.18 156.25 611 153 614.41 151.09 618.08 149.29 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 622.48 150 627.98 145.02 620.58 145.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 625 155.6 0 28 6 -seqids ",
		label=seqids,
		lp="625,157.5",
		pos="e,629.37,144.43 567.43,172.33 578.08,169.86 589.17,166.51 599,162 605.06,159.22 605.18,156.25 611,153 614.41,151.09 618.08,149.29 \
621.79,147.64"];
	Assign_Naming_HMM_to_Proteins -> Assign_Naming_HMM_to_Proteins_assignments	[_draw_="c 7 -#000000 B 4 1404 80.71 1404 75.59 1404 68.85 1404 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1406.45 62.78 1404 55.78 1401.55 62.78 ",
		pos="e,1404,54.265 1404,80.709 1404,75.593 1404,68.848 1404,62.666"];
	Search_Naming_HMMs -> Search_Naming_HMMs_hmm_hits	[_draw_="c 7 -#000000 B 4 689.09 125.56 756.37 109.39 903.3 74.06 976.61 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 977.04 58.85 983.27 54.83 975.89 54.09 ",
		pos="e,984.74,54.477 689.09,125.56 756.37,109.39 903.3,74.059 976.61,56.434"];
	Search_Naming_HMMs -> Assign_Naming_HMM_to_Proteins	[_draw_="c 7 -#000000 B 4 718.27 130.32 865.98 121.85 1226.93 101.15 1356.62 93.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1356.46 96.18 1363.31 93.33 1356.18 91.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1107 110.6 0 22 5 -input ",
		label=input,
		lp="1107,112.5",
		pos="e,1364.8,93.246 718.27,130.32 865.98,121.85 1226.9,101.15 1356.6,93.717"];
	PGAP_plus_ab_initio -> PGAP_plus_ab_initio_annotation	[_draw_="c 7 -#000000 B 10 465.59 220.96 440.27 216.22 416 205.33 416 181 416 181 416 181 416 89 416 73.69 405.41 63.81 391.41 57.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 392.64 55.3 385.23 55 390.83 59.86 ",
		pos="e,383.82,54.437 465.59,220.96 440.27,216.22 416,205.33 416,181 416,181 416,181 416,89 416,73.686 405.41,63.814 391.41,57.454"];
	PGAP_plus_ab_initio -> Name_by_WPs	[_draw_="c 7 -#000000 B 10 465.7 218.37 435.04 213.7 397.12 205.24 366 190 344.84 179.64 340.07 175.83 321 162 315.76 158.2 310.28 153.77 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 307.27 148.02 300.37 145.31 304.07 151.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389 178.1 0 46 9 -sequences ",
		label=sequences,
		lp="389,180",
		pos="e,299.22,144.32 465.7,218.37 435.04,213.7 397.12,205.24 366,190 344.84,179.64 340.07,175.83 321,162 315.76,158.2 310.28,153.77 305.4,\
149.65"];
	PGAP_plus_ab_initio -> Extract_Model_Proteins	[_draw_="c 7 -#000000 B 4 522 215.71 522 210.59 522 203.85 522 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 524.45 197.78 522 190.78 519.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 533 200.6 0 22 5 -input ",
		label=input,
		lp="533,202.5",
		pos="e,522,189.27 522,215.71 522,210.59 522,203.85 522,197.67"];
	Run_GeneMark_Post -> Run_GeneMark_Post_models	[_draw_="c 7 -#000000 B 10 1195 260.76 1195 252.1 1195 238.09 1195 226 1195 226 1195 226 1195 89 1195 80.31 1195 70.63 1195 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1197.45 62.76 1195 55.76 1192.55 62.76 ",
		pos="e,1195,54.243 1195,260.76 1195,252.1 1195,238.09 1195,226 1195,226 1195,226 1195,89 1195,80.308 1195,70.627 1195,62.655"];
	Run_GeneMark_Post -> PGAP_plus_ab_initio	[_draw_="c 7 -#000000 B 4 1149.01 266.06 1031.86 258.58 721.96 238.78 586.69 230.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 587.08 227.7 579.94 229.7 586.77 232.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 941 245.6 0 46 10 -annotation ",
		label=annotation,
		lp="941,247.5",
		pos="e,578.43,229.61 1149,266.06 1031.9,258.58 721.96,238.78 586.69,230.13"];
	Find_Best_Evidence_Alignments -> Find_Best_Evidence_Alignments_aligns	[_draw_="c 7 -#000000 B 13 1483.32 350.54 1549.92 333.83 1691.5 296.77 1707 280 1716.74 269.47 1714 262.84 1714 248.5 1714 248.5 1714 248.5 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1716.02 62.68 1713.35 55.75 1711.12 62.83 ",
		pos="e,1713.3,54.242 1483.3,350.54 1549.9,333.83 1691.5,296.77 1707,280 1716.7,269.47 1714,262.84 1714,248.5 1714,248.5 1714,248.5 1714,\
89 1714,80.305 1713.8,70.624 1713.6,62.653"];
	Find_Best_Evidence_Alignments -> Run_GeneMark	[_draw_="c 7 -#000000 B 7 1407.75 350.55 1381.98 345.33 1348.09 338.6 1318 333 1299.33 329.53 1278.61 325.9 1261.05 322.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1261.51 320.49 1254.19 321.72 1260.68 325.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1387 335.6 0 46 10 -alignments ",
		label=alignments,
		lp="1387,337.5",
		pos="e,1252.7,321.47 1407.7,350.55 1382,345.33 1348.1,338.6 1318,333 1299.3,329.53 1278.6,325.9 1261,322.89"];
}