digraph workflow {
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	subgraph cluster_inputs {
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		blastdb_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 224.5 448.5 224.5 467.5 295.5 467.5 295.5 448.5 ",
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		all_prots	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 442.5 448.5 442.5 467.5 501.5 467.5 501.5 448.5 ",
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		taxid	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 332.5 448.5 332.5 467.5 373.5 467.5 373.5 448.5 ",
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		genomic_ids	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 598 448.5 598 467.5 676 467.5 676 448.5 ",
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			rects="598,448.5,676,467.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 846 8 846 63 954 63 954 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 900 15 0 92 16 -Workflow Outputs ",
			bb="846,8,954,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="900,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		align	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 879.5 35.5 879.5 54.5 920.5 54.5 920.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 900 42.5 0 25 5 -align ",
			fillcolor="#94DDF4",
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			pos="900,45",
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			width=0.56944];
	}
	Filter_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 831.5 80.5 831.5 99.5 968.5 99.5 968.5 80.5 ",
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		height=0.27778,
		label="Filter Protein Alignments",
		pos="900,90",
		rects="831.5,80.5,968.5,99.5",
		width=1.9028];
	asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 10 747.84 457.04 815.92 456.22 963 449.41 963 406 963 406 963 406 963 134 963 119.47 951.43 109.5 938.21 102.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 939.53 100.75 932.14 100.11 937.51 105.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 985 268.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="985,270",
		pos="e,930.76,99.485 747.84,457.04 815.92,456.22 963,449.41 963,406 963,406 963,406 963,134 963,119.47 951.43,109.5 938.21,102.85"];
	Convert_PAF_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 586 260.5 586 279.5 642 279.5 642 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 614 267.5 0 40 7 -paf2asn ",
		height=0.27778,
		label=paf2asn,
		pos="614,270",
		rects="586,260.5,642,279.5",
		width=0.77778];
	asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 16 747.9 453.63 765.32 450.43 785.99 444.18 801 432 814.14 421.33 815.97 410.83 810 395 804.77 381.15 797.31 381.5 \
788 370 759.42 334.7 765.95 311.36 727 288 714.36 280.42 678.31 275.91 650.29 273.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 650.57 271.03 643.4 272.89 650.17 275.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 810 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="810,360",
		pos="e,641.89,272.77 747.9,453.63 765.32,450.43 785.99,444.18 801,432 814.14,421.33 815.97,410.83 810,395 804.77,381.15 797.31,381.5 \
788,370 759.42,334.7 765.95,311.36 727,288 714.36,280.42 678.31,275.91 650.29,273.46"];
	Get_Protein_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 471.5 350.5 471.5 369.5 528.5 369.5 528.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 500 357.5 0 41 8 -getfasta ",
		height=0.27778,
		label=getfasta,
		pos="500,360",
		rects="471.5,350.5,528.5,369.5",
		width=0.79167];
	asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 16 695.73 448.64 672.73 437.99 635.66 420.31 631 415 624.79 407.92 631.31 400.94 624 395 613.39 386.38 576.07 391 \
563 387 554.45 384.38 553.19 381.59 545 378 540.59 376.07 535.88 374.15 531.24 372.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 532.37 370.13 524.95 369.92 530.61 374.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 653 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="653,405",
		pos="e,523.54,369.37 695.73,448.64 672.73,437.99 635.66,420.31 631,415 624.79,407.92 631.31,400.94 624,395 613.39,386.38 576.07,391 563,\
387 554.45,384.38 553.19,381.59 545,378 540.59,376.07 535.88,374.15 531.24,372.33"];
	Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 503 215.5 503 234.5 673 234.5 673 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 588 222.5 0 154 31 -Filter Full-Coverage Alignments ",
		height=0.27778,
		label="Filter Full-Coverage Alignments",
		pos="588,225",
		rects="503,215.5,673,234.5",
		width=2.3611];
	asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 25 747.62 455.82 767.7 453.42 792.44 447.25 809 432 836.59 406.58 851.85 379.75 829 350 820.59 339.06 807.41 352.94 \
799 342 796.56 338.83 796.55 336.16 799 333 807.71 321.75 821.29 336.25 830 325 835.44 317.97 833.92 312.98 830 305 824.55 293.91 \
819.04 293.56 808 288 756.28 261.97 692.04 245.47 646.36 236.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 646.89 233.7 639.54 234.72 645.92 238.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 821 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="821,337.5",
		pos="e,638.06,234.42 747.62,455.82 767.7,453.42 792.44,447.25 809,432 836.59,406.58 851.85,379.75 829,350 820.59,339.06 807.41,352.94 \
799,342 796.56,338.83 796.55,336.16 799,333 807.71,321.75 821.29,336.25 830,325 835.44,317.97 833.92,312.98 830,305 824.55,293.91 \
819.04,293.56 808,288 756.28,261.97 692.04,245.47 646.36,236.09"];
	Get_Genomic_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 609.5 350.5 609.5 369.5 714.5 369.5 714.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 662 357.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="662,360",
		rects="609.5,350.5,714.5,369.5",
		width=1.4583];
	asn_cache -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 7 721.15 448.69 733.59 433.2 756.3 399.53 739 378 737.33 375.92 729.51 373.52 719.45 371.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 720.23 368.86 712.87 369.77 719.18 373.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 767 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="767,405",
		pos="e,711.39,369.45 721.15,448.69 733.59,433.2 756.3,399.53 739,378 737.33,375.92 729.51,373.52 719.45,371.2"];
	Remap_cross_origin_alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 693.5 215.5 693.5 234.5 798.5 234.5 798.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 746 222.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="746,225",
		rects="693.5,215.5,798.5,234.5",
		width=1.4583];
	asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 13 747.97 454.16 780.56 450.77 826.71 443.99 840 432 848.98 423.9 848 418.09 848 406 848 406 848 406 848 269 848 \
247.52 828.56 236.6 806.65 231.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 807.33 228.76 799.97 229.65 806.29 233.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 870 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="870,337.5",
		pos="e,798.49,229.33 747.97,454.16 780.56,450.77 826.71,443.99 840,432 848.98,423.9 848,418.09 848,406 848,406 848,406 848,269 848,247.52 \
828.56,236.6 806.65,231.11"];
	Filter_Protein_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 743 170.5 743 189.5 811 189.5 811 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 777 177.5 0 52 12 -align_filter ",
		height=0.27778,
		label=align_filter,
		pos="777,180",
		rects="743,170.5,811,189.5",
		width=0.94444];
	asn_cache -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 22 747.83 454.04 781.94 450.47 831.66 443.47 847 432 882.98 405.1 882.49 385.67 893 342 893.94 338.11 895.44 336.17 \
893 333 884.59 322.06 871.92 335.53 863 325 853.91 314.27 860 307.56 860 293.5 860 293.5 860 293.5 860 224 860 203.37 839.53 192.62 \
818.93 187.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 819.61 184.68 812.23 185.42 818.46 189.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 885 313.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="885,315",
		pos="e,810.76,185.07 747.83,454.04 781.94,450.47 831.66,443.47 847,432 882.98,405.1 882.49,385.67 893,342 893.94,338.11 895.44,336.17 \
893,333 884.59,322.06 871.92,335.53 863,325 853.91,314.27 860,307.56 860,293.5 860,293.5 860,293.5 860,224 860,203.37 839.53,192.62 \
818.93,187.04"];
	Filter_Short_Sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 533 350.5 533 369.5 595 369.5 595 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 564 357.5 0 46 10 -seq_filter ",
		height=0.27778,
		label=seq_filter,
		pos="564,360",
		rects="533,350.5,595,369.5",
		width=0.86111];
	asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 10 708.45 448.74 702.87 440.34 694.1 426.92 687 415 681.81 406.28 683.88 401.39 676 395 670.1 390.22 632.92 379.43 \
602.99 371.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 603.63 368.92 596.23 369.46 602.35 373.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 709 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="709,405",
		pos="e,594.77,369.06 708.45,448.74 702.87,440.34 694.1,426.92 687,415 681.81,406.28 683.88,401.39 676,395 670.1,390.22 632.92,379.43 \
602.99,371.28"];
	Align_Short_Proteins	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 364.5 305.5 364.5 324.5 501.5 324.5 501.5 305.5 ",
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		fillcolor="#F3CEA1",
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		label="Seed Protein Alignments",
		pos="433,315",
		rects="364.5,305.5,501.5,324.5",
		width=1.9028];
	asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 19 719.74 448.79 727.97 435.9 740.8 410.76 728 395 719.48 384.51 620.27 377.44 609 370 599.95 364.02 604.18 355.79 \
595 350 576.71 338.46 567.18 349.79 547 342 540.1 339.34 539.9 335.67 533 333 525.49 330.09 517.47 327.67 509.36 325.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 510.08 323.32 502.71 324.14 508.99 328.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 725 380.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="725,382.5",
		pos="e,501.24,323.81 719.74,448.79 727.97,435.9 740.8,410.76 728,395 719.48,384.51 620.27,377.44 609,370 599.95,364.02 604.18,355.79 \
595,350 576.71,338.46 567.18,349.79 547,342 540.1,339.34 539.9,335.67 533,333 525.49,330.09 517.47,327.67 509.36,325.67"];
	Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 450 260.5 450 279.5 536 279.5 536 260.5 ",
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		height=0.27778,
		label=align_sort_ma,
		pos="493,270",
		rects="450,260.5,536,279.5",
		width=1.1944];
	asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 16 739.99 448.62 767.91 438.17 806.23 418.76 790 395 785.69 388.7 731.55 375.24 726 370 712.84 357.58 721.26 346.31 \
709 333 681.36 303 667.74 300.77 629 288 620.89 285.33 579.14 280.31 544.01 276.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.44 274 537.22 275.67 543.91 278.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 748 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="748,360",
		pos="e,535.71,275.5 739.99,448.62 767.91,438.17 806.23,418.76 790,395 785.69,388.7 731.55,375.24 726,370 712.84,357.58 721.26,346.31 \
709,333 681.36,303 667.74,300.77 629,288 620.89,285.33 579.14,280.31 544.01,276.42"];
	Sort_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 867.5 125.5 867.5 144.5 932.5 144.5 932.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 900 132.5 0 49 10 -align_sort ",
		height=0.27778,
		label=align_sort,
		pos="900,135",
		rects="867.5,125.5,932.5,144.5",
		width=0.90278];
	asn_cache -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 10 747.87 455.18 804.19 451.21 911 439.3 911 406 911 406 911 406 911 179 911 170.04 908.73 160.35 906.26 152.44 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 933 290.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="933,292.5",
		pos="e,903.48,144.4 747.87,455.18 804.19,451.21 911,439.3 911,406 911,406 911,406 911,179 911,170.04 908.73,160.35 906.26,152.44"];
	uniColl_asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 10 113.7 451.03 64.83 444.02 0 430.18 0 406 0 406 0 406 0 134 0 92.93 605.9 90.31 823.42 90.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 823.1 93.14 830.1 90.7 823.11 88.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 38 268.1 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="38,270",
		pos="e,831.62,90.705 113.7,451.03 64.827,444.02 0,430.18 0,406 0,406 0,406 0,134 0,92.928 605.9,90.307 823.42,90.689"];
	uniColl_asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 19 167.18 448.55 167.74 430.39 169.99 388.45 179 378 186.89 368.84 196.29 378.38 205 370 211.79 363.47 206.6 357.71 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 578.07 277.92 584.72 274.65 577.48 273.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 234 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="234,360",
		pos="e,586.22,274.46 167.18,448.55 167.74,430.39 169.99,388.45 179,378 186.89,368.84 196.29,378.38 205,370 211.79,363.47 206.6,357.71 \
212,350 213.13,348.38 265.17,305.75 267,305 322.96,282.07 477.85,286.33 538,280 550.99,278.63 565.21,276.99 577.8,275.48"];
	uniColl_asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 16 174.05 448.95 178.07 444.18 183.07 437.93 187 432 197.32 416.42 191.31 405.15 207 395 227.39 381.81 291.86 389.69 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="229,405",
		pos="e,471.8,369.24 174.05,448.95 178.07,444.18 183.07,437.93 187,432 197.32,416.42 191.31,405.15 207,395 227.39,381.81 291.86,389.69 \
316,387 342.8,384.01 349.22,381.17 376,378 414.05,373.5 426.05,376.85 463.42,370.7"];
	uniColl_asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 13 126.97 448.55 105.33 441.38 83 428.52 83 406 83 406 83 406 83 269 83 199.15 168.55 250.49 238 243 324.75 233.65 \
424.15 229.44 494.8 227.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 121 335.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="121,337.5",
		pos="e,503.27,227.33 126.97,448.55 105.33,441.38 83,428.52 83,406 83,406 83,406 83,269 83,199.15 168.55,250.49 238,243 324.75,233.65 \
424.15,229.44 494.8,227.55"];
	uniColl_asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 13 164.32 448.75 158.81 430.52 147.62 385.61 158 350 169.73 309.78 190.28 304 229 288 413.48 211.74 476.2 253.06 \
675 235 678.41 234.69 681.91 234.34 685.44 233.97 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 187 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="187,337.5",
		pos="e,693.7,233.06 164.32,448.75 158.81,430.52 147.62,385.61 158,350 169.73,309.78 190.28,304 229,288 413.48,211.74 476.2,253.06 675,\
235 678.41,234.69 681.91,234.34 685.44,233.97"];
	uniColl_asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 13 192.61 448.53 209.99 441.72 232.55 430.68 248 415 254.98 407.92 249.76 400.56 258 395 276.48 382.53 335.8 388.99 \
358 387 431.39 380.42 452.34 383.12 524.99 370.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 525.17 373.09 531.65 369.47 524.33 368.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 280 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="280,405",
		pos="e,533.14,369.21 192.61,448.53 209.99,441.72 232.55,430.68 248,415 254.98,407.92 249.76,400.56 258,395 276.48,382.53 335.8,388.99 \
358,387 431.39,380.42 452.34,383.12 524.99,370.63"];
	uniColl_asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 19 170.42 448.79 172.31 443.98 174.56 437.73 176 432 178.96 420.24 175.26 386.41 184 378 195.76 366.68 241.28 374.39 \
257 370 277.3 364.33 280.28 357.43 300 350 325.14 340.53 332 339.75 358 333 366.81 330.71 376.24 328.44 385.34 326.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 385.82 328.74 392.1 324.79 384.73 323.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 380.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="222,382.5",
		pos="e,393.57,324.45 170.42,448.79 172.31,443.98 174.56,437.73 176,432 178.96,420.24 175.26,386.41 184,378 195.76,366.68 241.28,374.39 \
257,370 277.3,364.33 280.28,357.43 300,350 325.14,340.53 332,339.75 358,333 366.81,330.71 376.24,328.44 385.34,326.33"];
	uniColl_asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 13 165.4 448.68 161.29 426.16 151.48 364.73 164 350 178.29 333.19 195.43 355.35 213 342 234.06 326 216.2 302.97 238 \
288 254.34 276.77 372.17 272.94 441.8 271.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 441.57 274.1 448.53 271.52 441.49 269.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 186 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="186,360",
		pos="e,450.04,271.5 165.4,448.68 161.29,426.16 151.48,364.73 164,350 178.29,333.19 195.43,355.35 213,342 234.06,326 216.2,302.97 238,\
288 254.34,276.77 372.17,272.94 441.8,271.64"];
	Compute_Gencode	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 304 395.5 304 414.5 410 414.5 410 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 357 402.5 0 90 15 -compute_gencode ",
		height=0.27778,
		label=compute_gencode,
		pos="357,405",
		rects="304,395.5,410,414.5",
		width=1.4722];
	taxon_db -> Compute_Gencode	[_draw_="c 7 -#000000 B 7 395.01 448.6 388.59 444.11 380.97 438.23 375 432 371.85 428.71 368.86 424.83 366.24 421.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.47 420.01 362.58 415.49 364.37 422.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 394 425.6 0 38 8 -taxon_db ",
		label=taxon_db,
		lp="394,427.5",
		pos="e,361.75,414.23 395.01,448.6 388.59,444.11 380.97,438.23 375,432 371.85,428.71 368.86,424.83 366.24,421.08"];
	Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 488 395.5 488 414.5 596 414.5 596 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 542 402.5 0 92 17 -compart_annot2all ",
		height=0.27778,
		label=compart_annot2all,
		pos="542,405",
		rects="488,395.5,596,414.5",
		width=1.5];
	compartments -> Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 B 4 548.68 448.58 547.57 441.52 545.96 431.24 544.6 422.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 547.04 422.3 543.53 415.76 542.2 423.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 558.5 425.6 0 25 6 -aligns ",
		label=aligns,
		lp="558.5,427.5",
		pos="e,543.3,414.26 548.68,448.58 547.57,441.52 545.96,431.24 544.6,422.55"];
	compartments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 28 570.74 448.58 579.09 445.47 588.89 442.18 598 440 639.84 429.98 761.61 447.33 790 415 795.87 408.32 791.53 403.76 \
790 395 787.97 383.37 783.03 381.63 781 370 779.47 361.24 780.7 358.88 781 350 781.67 329.97 771.75 320.86 784 305 790.87 296.1 \
801.43 306.12 808 297 812.33 290.99 831.43 297.06 801 215 798.49 208.24 794.29 201.58 790.1 195.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 792.15 194.61 785.86 190.68 788.32 197.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 814 313.1 0 60 12 -compartments ",
		label=compartments,
		lp="814,315",
		pos="e,784.92,189.5 570.74,448.58 579.09,445.47 588.89,442.18 598,440 639.84,429.98 761.61,447.33 790,415 795.87,408.32 791.53,403.76 \
790,395 787.97,383.37 783.03,381.63 781,370 779.47,361.24 780.7,358.88 781,350 781.67,329.97 771.75,320.86 784,305 790.87,296.1 \
801.43,306.12 808,297 812.33,290.99 831.43,297.06 801,215 798.49,208.24 794.29,201.58 790.1,195.97"];
	blastdb_dir -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 13 241.39 448.62 217.89 436.94 182.51 414.93 200 395 209.02 384.72 247.9 390.9 261 387 297.39 376.17 302.97 364.64 \
338 350 358.04 341.62 380.96 333.39 399.26 327.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 400.05 329.44 405.89 324.87 398.47 324.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 308 380.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="308,382.5",
		pos="e,407.32,324.38 241.39,448.62 217.89,436.94 182.51,414.93 200,395 209.02,384.72 247.9,390.9 261,387 297.39,376.17 302.97,364.64 \
338,350 358.04,341.62 380.96,333.39 399.26,327.12"];
	all_prots -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 7 459.52 448.67 443.43 436.86 418.87 414.5 431 395 435.52 387.74 452.78 379.24 468.9 372.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 469.68 374.88 475.26 369.99 467.86 370.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 441 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="441,405",
		pos="e,476.67,369.43 459.52,448.67 443.43,436.86 418.87,414.5 431,395 435.52,387.74 452.78,379.24 468.9,372.55"];
	all_prots -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 22 454.76 448.62 447.17 444.36 438.53 438.67 432 432 418.62 418.32 422.35 409.62 410 395 402.47 386.09 400.61 382.85 \
390 378 368.73 368.28 358.32 381.57 338 370 309.11 353.55 282.95 332.91 301 305 353.93 223.15 407.13 241.25 501 215 581.76 192.41 \
680 184.82 734.81 182.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 734.83 184.73 741.72 181.98 734.62 179.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 313.1 0 61 15 -query_allowlist ",
		label=query_allowlist,
		lp="331.5,315",
		pos="e,743.23,181.91 454.76,448.62 447.17,444.36 438.53,438.67 432,432 418.62,418.32 422.35,409.62 410,395 402.47,386.09 400.61,382.85 \
390,378 368.73,368.28 358.32,381.57 338,370 309.11,353.55 282.95,332.91 301,305 353.93,223.15 407.13,241.25 501,215 581.76,192.41 \
680,184.82 734.81,182.28"];
	all_prots -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 7 466.2 448.52 458.23 435.72 446.16 411.23 458 395 462.2 389.24 496.81 378.82 525.35 371.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 525.63 373.49 531.75 369.3 524.35 368.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 472 403.1 0 28 6 -seqids ",
		label=seqids,
		lp="472,405",
		pos="e,533.21,368.9 466.2,448.52 458.23,435.72 446.16,411.23 458,395 462.2,389.24 496.81,378.82 525.35,371.02"];
	taxid -> Compute_Gencode	[_draw_="c 7 -#000000 B 7 348.48 448.52 345.38 441.58 342.29 431.55 345 423 345.12 422.62 345.25 422.24 345.39 421.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 347.53 423.07 348.79 415.76 343.25 420.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 355.5 425.6 0 21 5 -taxid ",
		label=taxid,
		lp="355.5,427.5",
		pos="e,349.52,414.44 348.48,448.52 345.38,441.58 342.29,431.55 345,423 345.12,422.62 345.25,422.24 345.39,421.87"];
	genomic_ids -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 7 627.87 448.82 615.61 436.81 596.52 413.8 607 395 612.22 385.64 621.2 378.53 630.4 373.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 631.32 375.58 636.42 370.19 629.08 371.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 617 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="617,405",
		pos="e,637.76,369.5 627.87,448.82 615.61,436.81 596.52,413.8 607,395 612.22,385.64 621.2,378.53 630.4,373.3"];
	Filter_Protein_Alignments -> align	[_draw_="c 7 -#000000 B 4 900 80.71 900 75.59 900 68.85 900 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 902.45 62.78 900 55.78 897.55 62.78 ",
		pos="e,900,54.265 900,80.709 900,75.593 900,68.848 900,62.666"];
	Convert_PAF_Alignments -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 4 640.08 260.5 660.69 253.79 689.62 244.37 712.04 237.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 712.64 239.44 718.54 234.95 711.12 234.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 701.5 245.6 0 21 5 -align ",
		label=align,
		lp="701.5,247.5",
		pos="e,719.98,234.48 640.08,260.5 660.69,253.79 689.62,244.37 712.04,237.06"];
	Run_Miniprot_fast	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 523 305.5 523 324.5 581 324.5 581 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 552 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="552,315",
		rects="523,305.5,581,324.5",
		width=0.80556];
	Get_Protein_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 519.13 350.55 523.59 348.13 528.16 345.25 532 342 535.7 338.88 539.14 334.96 542.1 331.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 543.88 332.84 545.96 325.72 539.89 329.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 557 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="557,337.5",
		pos="e,546.84,324.49 519.13,350.55 523.59,348.13 528.16,345.25 532,342 535.7,338.88 539.14,334.96 542.1,331.12"];
	Run_Miniprot_slow	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 585 305.5 585 324.5 643 324.5 643 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 614 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="614,315",
		rects="585,305.5,643,324.5",
		width=0.80556];
	Get_Protein_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 528.41 351.1 529.96 350.72 531.5 350.35 533 350 551.51 345.72 557.41 349.19 575 342 582.85 338.79 590.78 333.88 \
597.42 329.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 598.67 331.31 602.83 325.18 595.75 327.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 607 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="607,337.5",
		pos="e,604.05,324.27 528.41,351.1 529.96,350.72 531.5,350.35 533,350 551.51,345.72 557.41,349.19 575,342 582.85,338.79 590.78,333.88 \
597.42,329.19"];
	Compute_Gencode_int	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 340.5 350.5 340.5 369.5 467.5 369.5 467.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 404 357.5 0 111 19 -Compute_Gencode_int ",
		height=0.27778,
		label=Compute_Gencode_int,
		pos="404,360",
		rects="340.5,350.5,467.5,369.5",
		width=1.7639];
	Compute_Gencode_int -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 10 440.35 350.52 447.7 348.21 455.24 345.38 462 342 467.96 339.01 467.94 335.77 474 333 477.96 331.19 496.85 327.05 \
515.05 323.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 515.45 325.74 521.82 321.94 514.47 320.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 477 335.6 0 6 1 -T ",
		label=T,
		lp="477,337.5",
		pos="e,523.3,321.64 440.35,350.52 447.7,348.21 455.24,345.38 462,342 467.96,339.01 467.94,335.77 474,333 477.96,331.19 496.85,327.05 \
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	Compute_Gencode_int -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 464.43 350.54 489.88 346.86 514.29 343.13 517 342 523.15 339.43 522.85 335.58 529 333 548.2 324.93 556.3 328.74 \
577.01 325.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 577.32 328 583.76 324.32 576.43 323.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 532 335.6 0 6 1 -T ",
		label=T,
		lp="532,337.5",
		pos="e,585.25,324.05 464.43,350.54 489.88,346.86 514.29,343.13 517,342 523.15,339.43 522.85,335.58 529,333 548.2,324.93 556.3,328.74 \
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	Compute_Gencode_int -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 7 406.07 350.79 407.68 345.41 410.26 338.41 414 333 414.69 332 415.45 331.02 416.26 330.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.8 331.99 420.99 325.29 414.32 328.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 439.5 335.6 0 51 10 -db_gencode ",
		label=db_gencode,
		lp="439.5,337.5",
		pos="e,422.05,324.21 406.07,350.79 407.68,345.41 410.26,338.41 414,333 414.69,332 415.45,331.02 416.26,330.06"];
	Filter_Full_Coverage_Alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 625.34 215.5 656.98 208.31 702.3 197.99 735.16 190.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 735.47 192.96 741.75 189.02 734.38 188.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 710 200.6 0 22 5 -input ",
		label=input,
		lp="710,202.5",
		pos="e,743.23,188.68 625.34,215.5 656.98,208.31 702.3,197.99 735.16,190.52"];
	Get_Genomic_FASTA -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 7 696.36 350.5 700.99 348.28 705.38 345.5 709 342 736.62 315.29 743.67 268.02 745.44 242.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 747.88 243.02 745.81 235.9 742.99 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 772 290.6 0 70 16 -delta_seqs_input ",
		label=delta_seqs_input,
		lp="772,292.5",
		pos="e,745.89,234.39 696.36,350.5 700.99,348.28 705.38,345.5 709,342 736.62,315.29 743.67,268.02 745.44,242.86"];
	Get_Genomic_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 10 648.88 350.52 645.23 347.94 641.35 345 638 342 634.01 338.43 634.67 335.61 630 333 614.49 324.32 606.84 328.12 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 589.58 323.16 582.25 324.28 588.68 327.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 655 335.6 0 34 6 -genome ",
		label=genome,
		lp="655,337.5",
		pos="e,580.76,324.01 648.88,350.52 645.23,347.94 641.35,345 638,342 634.01,338.43 634.67,335.61 630,333 614.49,324.32 606.84,328.12 589.06,\
325.55"];
	Get_Genomic_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 7 669.63 350.73 673.65 345.33 677.01 338.33 673 333 667.66 325.9 659.54 321.62 651.02 319.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 651.65 316.71 644.27 317.49 650.52 321.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691 335.6 0 34 6 -genome ",
		label=genome,
		lp="691,337.5",
		pos="e,642.8,317.14 669.63,350.73 673.65,345.33 677.01,338.33 673,333 667.66,325.9 659.54,321.62 651.02,319.08"];
	Remap_cross_origin_alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 751.98 215.71 756.01 210.12 761.44 202.58 766.22 195.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 768.05 197.6 770.16 190.49 764.08 194.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 775 200.6 0 22 5 -input ",
		label=input,
		lp="775,202.5",
		pos="e,771.04,189.27 751.98,215.71 756.01,210.12 761.44,202.58 766.22,195.96"];
	Run_Miniprot_fast -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 564.25 305.5 573 299.44 584.93 291.16 594.92 284.23 ",
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	Run_Miniprot_slow -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 614 305.71 614 300.59 614 293.85 614 287.67 ",
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	Sort_Short_Protein_Alignments -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 4 511.77 260.5 526.08 254.03 545.97 245.02 561.84 237.84 ",
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	Sort_Protein_Alignments -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 4 900 125.71 900 120.59 900 113.85 900 107.67 ",
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}