digraph workflow {
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		blastdb_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 198.5 448.5 198.5 467.5 269.5 467.5 269.5 448.5 ",
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		all_prots	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 683.5 448.5 683.5 467.5 742.5 467.5 742.5 448.5 ",
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		taxon_db	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 573.5 448.5 573.5 467.5 634.5 467.5 634.5 448.5 ",
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			bb="142,8,250,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="196,17.5",
			lwidth=1.28,
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			style=dashed
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		align	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 175.5 35.5 175.5 54.5 216.5 54.5 216.5 35.5 ",
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	}
	Filter_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 127.5 80.5 127.5 99.5 264.5 99.5 264.5 80.5 ",
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		label="Filter Protein Alignments",
		pos="196,90",
		rects="127.5,80.5,264.5,99.5",
		width=1.9028];
	uniColl_asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 25 423.96 448.5 434.29 445.22 446.6 441.83 458 440 565.57 422.76 595.27 448.22 703 432 718.03 429.74 720.99 425.38 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1018 268.1 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="1018,270",
		pos="e,264.46,91.116 423.96,448.5 434.29,445.22 446.6,441.83 458,440 565.57,422.76 595.27,448.22 703,432 718.03,429.74 720.99,425.38 \
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999,134 999,97.871 473.85,92.055 272.92,91.152"];
	Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 133 215.5 133 234.5 303 234.5 303 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 218 222.5 0 154 31 -Filter Full-Coverage Alignments ",
		height=0.27778,
		label="Filter Full-Coverage Alignments",
		pos="218,225",
		rects="133,215.5,303,234.5",
		width=2.3611];
	uniColl_asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 13 371.4 448.57 362.03 445.83 351.58 442.77 342 440 258.2 415.75 174 425.74 174 338.5 174 338.5 174 338.5 174 269 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.8 241.05 199.34 235.18 192.13 236.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 213 335.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="213,337.5",
		pos="e,200.61,234.36 371.4,448.57 362.03,445.83 351.58,442.77 342,440 258.2,415.75 174,425.74 174,338.5 174,338.5 174,338.5 174,269 174,\
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	Get_Protein_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 771.5 350.5 771.5 369.5 828.5 369.5 828.5 350.5 ",
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		height=0.27778,
		label=getfasta,
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		rects="771.5,350.5,828.5,369.5",
		width=0.79167];
	uniColl_asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 19 425.17 448.57 435.27 445.46 447.09 442.17 458 440 490.44 433.54 499.99 440.34 532 432 550.69 427.13 558.79 429.1 \
572 415 578.44 408.13 571.7 400.95 579 395 622.79 359.29 648.97 385.34 705 378 730.36 374.68 738.78 375.42 763.54 370.8 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 601 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="601,405",
		pos="e,771.79,369.18 425.17,448.57 435.27,445.46 447.09,442.17 458,440 490.44,433.54 499.99,440.34 532,432 550.69,427.13 558.79,429.1 \
572,415 578.44,408.13 571.7,400.95 579,395 622.79,359.29 648.97,385.34 705,378 730.36,374.68 738.78,375.42 763.54,370.8"];
	Convert_PAF_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 524 260.5 524 279.5 580 279.5 580 260.5 ",
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		height=0.27778,
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	uniColl_asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 13 429.53 448.62 448.8 442.88 470.94 435.67 474 432 497.59 403.71 461.39 377.4 486 350 495.51 339.41 505.29 350.09 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.1 288.13 550.27 280.76 546.33 287.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 508 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="508,360",
		pos="e,550.6,279.28 429.53,448.62 448.8,442.88 470.94,435.67 474,432 497.59,403.71 461.39,377.4 486,350 495.51,339.41 505.29,350.09 517,\
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	Remap_cross_origin_alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 398.5 215.5 398.5 234.5 503.5 234.5 503.5 215.5 ",
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		label=cross_origin_fasta,
		pos="451,225",
		rects="398.5,215.5,503.5,234.5",
		width=1.4583];
	uniColl_asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 13 422.91 448.53 437.46 441.83 455.17 430.92 464 415 473.7 397.5 464.78 390 465 370 465.1 361.11 465.26 358.89 465 \
350 463.87 311.38 457.52 266.4 453.77 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 456.21 242.4 452.68 235.88 451.37 243.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="486,337.5",
		pos="e,452.43,234.39 422.91,448.53 437.46,441.83 455.17,430.92 464,415 473.7,397.5 464.78,390 465,370 465.1,361.11 465.26,358.89 465,\
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	Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 220 260.5 220 279.5 306 279.5 306 260.5 ",
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		height=0.27778,
		label=align_sort_ma,
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		width=1.1944];
	uniColl_asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 16 377.53 448.62 350.96 438.63 308.39 422.37 293 415 276.84 407.26 274.44 402.12 258 395 246.91 390.19 239.18 396.73 \
232 387 221.34 372.57 242.41 376.14 258 342 265.9 324.69 266.11 302.5 265.01 287.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.48 287.57 264.37 280.84 262.6 288.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 276 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="276,360",
		pos="e,264.22,279.33 377.53,448.62 350.96,438.63 308.39,422.37 293,415 276.84,407.26 274.44,402.12 258,395 246.91,390.19 239.18,396.73 \
232,387 221.34,372.57 242.41,376.14 258,342 265.9,324.69 266.11,302.5 265.01,287.58"];
	Align_Short_Proteins	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 276.5 305.5 276.5 324.5 413.5 324.5 413.5 305.5 ",
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		fillcolor="#F3CEA1",
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		label="Seed Protein Alignments",
		pos="345,315",
		rects="276.5,305.5,413.5,324.5",
		width=1.9028];
	uniColl_asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 16 389.44 448.6 383.77 443.92 376.79 437.87 371 432 355.94 416.72 357.48 407.44 340 395 331.86 389.21 325.76 394.35 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.16 331.56 314.13 325.29 307.12 327.72 ",
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		label=uniColl_asn_cache,
		lp="357,382.5",
		pos="e,315.31,324.35 389.44,448.6 383.77,443.92 376.79,437.87 371,432 355.94,416.72 357.48,407.44 340,395 331.86,389.21 325.76,394.35 \
319,387 302.28,368.84 292.47,353.65 306,333 306.81,331.77 307.72,330.62 308.73,329.56"];
	Filter_Short_Sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 403 350.5 403 369.5 465 369.5 465 350.5 ",
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		height=0.27778,
		label=seq_filter,
		pos="434,360",
		rects="403,350.5,465,369.5",
		width=0.86111];
	uniColl_asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 10 390.94 448.83 378.29 436.44 358.25 412.47 371 395 377.88 385.58 385.52 392.13 396 387 403.12 383.52 410.43 378.83 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 393 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="393,405",
		pos="e,423.54,369.39 390.94,448.83 378.29,436.44 358.25,412.47 371,395 377.88,385.58 385.52,392.13 396,387 403.12,383.52 410.43,378.83 \
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	Sort_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 163.5 125.5 163.5 144.5 228.5 144.5 228.5 125.5 ",
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		height=0.27778,
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		width=0.90278];
	asn_cache -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 13 292.53 448.66 285.8 445.4 277.7 441.98 270 440 222.31 427.7 51 455.25 51 406 51 406 51 406 51 179 51 157.09 112.61 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 73 290.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="73,292.5",
		pos="e,163.82,139.03 292.53,448.66 285.8,445.4 277.7,441.98 270,440 222.31,427.7 51,455.25 51,406 51,406 51,406 51,179 51,157.09 112.61,\
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	asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 16 292.94 448.66 286.14 445.33 277.88 441.84 270 440 179.91 418.95 152.33 451.99 62 432 32.83 425.54 0 435.88 0 406 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.41 96.3 126.21 93.35 119.06 91.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 22 268.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="22,270",
		pos="e,127.72,93.245 292.94,448.66 286.14,445.33 277.88,441.84 270,440 179.91,418.95 152.33,451.99 62,432 32.825,425.54 0,435.88 0,406 \
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	asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 22 290.85 448.56 284.42 445.6 276.97 442.41 270 440 256.14 435.21 251.57 437.54 238 432 178.56 407.73 151.63 400.42 \
125 342 123.34 338.36 122.59 336.19 125 333 132.79 322.67 144.19 334.48 153 325 178.33 297.73 145.53 271.05 170 243 171.37 241.43 \
172.9 240 174.55 238.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 175.52 240.99 180.09 235.15 172.88 236.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 147 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="147,337.5",
		pos="e,181.37,234.33 290.85,448.56 284.42,445.6 276.97,442.41 270,440 256.14,435.21 251.57,437.54 238,432 178.56,407.73 151.63,400.42 \
125,342 123.34,338.36 122.59,336.19 125,333 132.79,322.67 144.19,334.48 153,325 178.33,297.73 145.53,271.05 170,243 171.37,241.43 \
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	asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 16 324.27 448.52 330.86 445.41 338.64 442.13 346 440 421.05 418.28 459.67 464.64 520 415 527.27 409.02 521.88 402.9 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 763.58 372.6 770.31 369.47 763.1 367.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 549 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="549,405",
		pos="e,771.81,369.32 324.27,448.52 330.86,445.41 338.64,442.13 346,440 421.05,418.28 459.67,464.64 520,415 527.27,409.02 521.88,402.9 \
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	asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 22 313.9 448.73 323.52 435.75 343.75 410.51 366 395 373.52 389.76 379.93 394.63 385 387 398.48 366.69 359.44 373.24 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="379,360",
		pos="e,548.15,279.47 313.9,448.73 323.52,435.75 343.75,410.51 366,395 373.52,389.76 379.93,394.63 385,387 398.48,366.69 359.44,373.24 \
357,370 346.5,356.08 354.97,341.83 370,333 391.3,320.49 400.78,329.86 425,325 474.04,315.16 492.96,325.59 534,297 537.84,294.32 \
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	Filter_Protein_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 338 170.5 338 189.5 406 189.5 406 170.5 ",
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		height=0.27778,
		label=align_filter,
		pos="372,180",
		rects="338,170.5,406,189.5",
		width=0.94444];
	asn_cache -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 19 291.73 448.53 285.14 445.42 277.36 442.14 270 440 222.68 426.26 202.18 443.51 162 415 123.96 388.01 117.68 370.63 \
108 325 107.17 321.09 108 320 108 316 108 316 108 316 109 224 109 201.89 255.61 188.83 329.9 183.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 329.83 186.09 336.65 183.16 329.49 181.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130 313.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="130,315",
		pos="e,338.16,183.06 291.73,448.53 285.14,445.42 277.36,442.14 270,440 222.68,426.26 202.18,443.51 162,415 123.96,388.01 117.68,370.63 \
108,325 107.17,321.09 108,320 108,316 108,316 108,316 109,224 109,201.89 255.61,188.83 329.9,183.63"];
	asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 16 302.62 448.54 299.89 443.84 296.78 437.8 295 432 292.76 424.73 293.45 422.59 293 415 290.8 377.44 283.93 355.61 \
314 333 331.82 319.6 396.21 338.43 414 325 440 305.38 447.73 265.36 450.03 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 452.46 243.06 450.58 235.88 447.57 242.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 336 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="336,337.5",
		pos="e,450.7,234.38 302.62,448.54 299.89,443.84 296.78,437.8 295,432 292.76,424.73 293.45,422.59 293,415 290.8,377.44 283.93,355.61 314,\
333 331.82,319.6 396.21,338.43 414,325 440,305.38 447.73,265.36 450.03,242.67"];
	Get_Genomic_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 531.5 350.5 531.5 369.5 636.5 369.5 636.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 584 357.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="584,360",
		rects="531.5,350.5,636.5,369.5",
		width=1.4583];
	asn_cache -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 13 326.08 448.65 332.35 445.83 339.45 442.7 346 440 375 428.03 384 429.14 412 415 426.64 407.61 427.93 401.46 443 \
395 468.48 384.08 498.12 376.27 523.63 370.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 523.9 373.35 530.27 369.55 522.93 368.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 465 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="465,405",
		pos="e,531.76,369.25 326.08,448.65 332.35,445.83 339.45,442.7 346,440 375,428.03 384,429.14 412,415 426.64,407.61 427.93,401.46 443,395 \
468.48,384.08 498.12,376.27 523.63,370.91"];
	asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 19 289.51 448.55 283.33 445.77 276.39 442.71 270 440 261.18 436.27 258.14 437.05 250 432 231.4 420.46 189.61 374.01 \
188 370 184.69 361.75 182.12 356.67 188 350 206.66 328.82 230.64 361.54 251 342 258.56 334.74 261.37 306.53 262.4 287.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.85 288.09 262.72 280.99 259.95 287.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 210 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="210,360",
		pos="e,262.79,279.47 289.51,448.55 283.33,445.77 276.39,442.71 270,440 261.18,436.27 258.14,437.05 250,432 231.4,420.46 189.61,374.01 \
188,370 184.69,361.75 182.12,356.67 188,350 206.66,328.82 230.64,361.54 251,342 258.56,334.74 261.37,306.53 262.4,287.93"];
	asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 13 290.49 448.65 262.97 434.42 214.9 404.47 237 378 249.74 362.74 265.73 382.72 281 370 294.51 358.75 282.36 345.22 \
295 333 296.73 331.33 298.63 329.82 300.65 328.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.67 330.69 306.57 325.12 299.27 326.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 259 380.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="259,382.5",
		pos="e,307.89,324.38 290.49,448.65 262.97,434.42 214.9,404.47 237,378 249.74,362.74 265.73,382.72 281,370 294.51,358.75 282.36,345.22 \
295,333 296.73,331.33 298.63,329.82 300.65,328.46"];
	asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 7 304.09 448.8 297.13 432.87 284.95 397.62 303 378 309.34 371.11 370.01 371.52 394.92 370.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.9 372.48 401.64 369.38 394.43 367.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="317,405",
		pos="e,403.14,369.24 304.09,448.8 297.13,432.87 284.95,397.62 303,378 309.34,371.11 370.01,371.52 394.92,370.02"];
	Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 794 395.5 794 414.5 902 414.5 902 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 848 402.5 0 92 17 -compart_annot2all ",
		height=0.27778,
		label=compart_annot2all,
		pos="848,405",
		rects="794,395.5,902,414.5",
		width=1.5];
	compartments -> Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 B 4 800.41 448.58 809.13 440.78 822.25 429.04 832.51 419.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 834.05 421.77 837.63 415.27 830.78 418.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 839.5 425.6 0 25 6 -aligns ",
		label=aligns,
		lp="839.5,427.5",
		pos="e,838.76,414.26 800.41,448.58 809.13,440.78 822.25,429.04 832.51,419.86"];
	compartments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 10 834.72 454.44 892.76 449.82 988 437.44 988 406 988 406 988 406 988 224 988 195.19 553.52 184.44 414.34 181.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 414.56 179.29 407.51 181.61 414.46 184.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1018 313.1 0 60 12 -compartments ",
		label=compartments,
		lp="1018,315",
		pos="e,406,181.58 834.72,454.44 892.76,449.82 988,437.44 988,406 988,406 988,406 988,224 988,195.19 553.52,184.44 414.34,181.74"];
	Compute_Gencode	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 656 395.5 656 414.5 762 414.5 762 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 709 402.5 0 90 15 -compute_gencode ",
		height=0.27778,
		label=compute_gencode,
		pos="709,405",
		rects="656,395.5,762,414.5",
		width=1.4722];
	taxid -> Compute_Gencode	[_draw_="c 7 -#000000 B 10 670.4 448.55 674.56 445.65 679.39 442.51 684 440 692.05 435.62 697.1 439.01 703 432 705.28 429.29 706.74 425.87 \
707.65 422.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 710.06 422.92 708.75 415.61 705.22 422.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717.5 425.6 0 21 5 -taxid ",
		label=taxid,
		lp="717.5,427.5",
		pos="e,708.99,414.12 670.4,448.55 674.56,445.65 679.39,442.51 684,440 692.05,435.62 697.1,439.01 703,432 705.28,429.29 706.74,425.87 \
707.65,422.41"];
	genomic_ids -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 10 550.24 448.6 577.2 437.31 621.78 418.3 624 415 633.2 401.36 634.14 391.68 625 378 624.18 376.77 623.24 375.62 \
622.23 374.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 623.79 372.68 616.77 370.28 620.77 376.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 641 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="641,405",
		pos="e,615.58,369.34 550.24,448.6 577.2,437.31 621.78,418.3 624,415 633.2,401.36 634.14,391.68 625,378 624.18,376.77 623.24,375.62 622.23,\
374.56"];
	blastdb_dir -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 10 198.89 454.84 143.1 449.75 42.87 432.91 67 378 78.89 350.93 88.86 344.75 116 333 129.82 327.02 207.15 322.17 268.17 \
319.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.28 321.66 275.15 318.87 268.04 316.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 90 380.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="90,382.5",
		pos="e,276.66,318.8 198.89,454.84 143.1,449.75 42.875,432.91 67,378 78.893,350.93 88.865,344.75 116,333 129.82,327.02 207.15,322.17 268.17,\
319.21"];
	all_prots -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 10 725.08 448.79 735.81 441.04 751.38 428.6 762 415 768.12 407.17 766.58 403.33 772 395 776.37 388.27 781.87 381.35 \
786.82 375.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 788.54 377.27 791.31 370.39 784.85 374.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 782 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="782,405",
		pos="e,792.3,369.25 725.08,448.79 735.81,441.04 751.38,428.6 762,415 768.12,407.17 766.58,403.33 772,395 776.37,388.27 781.87,381.35 \
786.82,375.52"];
	all_prots -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 22 727.47 448.51 733.36 445.39 740.33 442.11 747 440 784.14 428.23 919 444.96 919 406 919 406 919 406 919 336.5 919 \
322.44 914.14 316.66 922 305 935.44 285.05 957.52 300.56 970 280 974.61 272.4 975.86 266.68 970 260 933.27 218.1 544.3 191.27 414.15 \
183.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 414.61 180.98 407.47 183.01 414.31 185.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 952.5 313.1 0 61 15 -query_allowlist ",
		label=query_allowlist,
		lp="952.5,315",
		pos="e,405.96,182.92 727.47,448.51 733.36,445.39 740.33,442.11 747,440 784.14,428.23 919,444.96 919,406 919,406 919,406 919,336.5 919,\
322.44 914.14,316.66 922,305 935.44,285.05 957.52,300.56 970,280 974.61,272.4 975.86,266.68 970,260 933.27,218.1 544.3,191.27 414.15,\
183.41"];
	all_prots -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 13 699.32 448.62 693.55 445.44 686.64 442.09 680 440 600.86 415.08 563.42 461.93 495 415 486.63 409.26 490.83 402.5 \
484 395 476.49 386.75 466.61 379.49 457.61 373.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 458.89 371.73 451.62 370.23 456.36 375.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 509 403.1 0 28 6 -seqids ",
		label=seqids,
		lp="509,405",
		pos="e,450.33,369.45 699.32,448.62 693.55,445.44 686.64,442.09 680,440 600.86,415.08 563.42,461.93 495,415 486.63,409.26 490.83,402.5 \
484,395 476.49,386.75 466.61,379.49 457.61,373.82"];
	taxon_db -> Compute_Gencode	[_draw_="c 7 -#000000 B 7 617.5 448.55 629.46 441.26 647.52 430.72 664 423 668.16 421.05 672.61 419.15 677.03 417.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 677.84 419.69 683.48 414.87 676.07 415.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 683 425.6 0 38 8 -taxon_db ",
		label=taxon_db,
		lp="683,427.5",
		pos="e,684.89,414.32 617.5,448.55 629.46,441.26 647.52,430.72 664,423 668.16,421.05 672.61,419.15 677.03,417.38"];
	Sort_Protein_Alignments -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 4 196 125.71 196 120.59 196 113.85 196 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.45 107.78 196 100.78 193.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 208.5 110.6 0 25 7 -file_in ",
		label=file_in,
		lp="208.5,112.5",
		pos="e,196,99.265 196,125.71 196,120.59 196,113.85 196,107.67"];
	Extract_Proteins_From_Compartments -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 4 838.75 395.71 832.1 389.76 823.01 381.61 815.29 374.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 817.2 373.12 810.35 370.28 813.93 376.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 838 380.6 0 20 6 -gilist ",
		label=gilist,
		lp="838,382.5",
		pos="e,809.23,369.27 838.75,395.71 832.1,389.76 823.01,381.61 815.29,374.7"];
	Extract_Proteins_From_Compartments -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 13 794.3 395.51 792.85 395.33 791.42 395.16 790 395 739.97 389.36 727.2 390.92 677 387 588.5 380.09 565.85 382.69 \
478 370 476.38 369.77 474.73 369.51 473.06 369.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 473.5 366.83 466.18 368.02 472.65 371.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691 380.6 0 28 6 -seqids ",
		label=seqids,
		lp="691,382.5",
		pos="e,464.69,367.75 794.3,395.51 792.85,395.33 791.42,395.16 790,395 739.97,389.36 727.2,390.92 677,387 588.5,380.09 565.85,382.69 478,\
370 476.38,369.77 474.73,369.51 473.06,369.24"];
	Filter_Protein_Alignments -> align	[_draw_="c 7 -#000000 B 4 196 80.71 196 75.59 196 68.85 196 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.45 62.78 196 55.78 193.55 62.78 ",
		pos="e,196,54.265 196,80.709 196,75.593 196,68.848 196,62.666"];
	Compute_Gencode_int	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 640.5 350.5 640.5 369.5 767.5 369.5 767.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 704 357.5 0 111 19 -Compute_Gencode_int ",
		height=0.27778,
		label=Compute_Gencode_int,
		pos="704,360",
		rects="640.5,350.5,767.5,369.5",
		width=1.7639];
	Compute_Gencode_int -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 13 642.69 350.52 640.77 350.33 638.87 350.16 637 350 612.52 347.92 439.17 350.19 416 342 409.71 339.78 409.97 335.97 \
404 333 399.49 330.75 394.64 328.76 389.72 327 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 390.83 324.79 383.41 324.9 389.28 329.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 441.5 335.6 0 51 10 -db_gencode ",
		label=db_gencode,
		lp="441.5,337.5",
		pos="e,381.98,324.42 642.69,350.52 640.77,350.33 638.87,350.16 637,350 612.52,347.92 439.17,350.19 416,342 409.71,339.78 409.97,335.97 \
404,333 399.49,330.75 394.64,328.76 389.72,327"];
	Run_Miniprot_fast	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 658 305.5 658 324.5 716 324.5 716 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 687 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="687,315",
		rects="658,305.5,716,324.5",
		width=0.80556];
	Compute_Gencode_int -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 708.59 350.93 710.97 345.61 712.84 338.63 710 333 709.52 332.05 708.96 331.14 708.34 330.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 710.3 328.78 703.66 325.48 706.8 332.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 714 335.6 0 6 1 -T ",
		label=T,
		lp="714,337.5",
		pos="e,702.6,324.4 708.59,350.93 710.97,345.61 712.84,338.63 710,333 709.52,332.05 708.96,331.14 708.34,330.28"];
	Run_Miniprot_slow	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 555 305.5 555 324.5 613 324.5 613 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 584 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="584,315",
		rects="555,305.5,613,324.5",
		width=0.80556];
	Compute_Gencode_int -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 645.81 350.5 637.3 348.29 628.78 345.5 621 342 614.92 339.26 614.42 336.88 609 333 607.24 331.75 605.41 330.45 \
603.56 329.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 604.95 327.15 597.79 325.22 602.18 331.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 624 335.6 0 6 1 -T ",
		label=T,
		lp="624,337.5",
		pos="e,596.54,324.36 645.81,350.5 637.3,348.29 628.78,345.5 621,342 614.92,339.26 614.42,336.88 609,333 607.24,331.75 605.41,330.45 603.56,\
329.17"];
	Filter_Full_Coverage_Alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 248.43 215.5 272.89 208.67 307.41 199.03 333.75 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 334.1 194.13 340.18 189.88 332.78 189.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 320 200.6 0 22 5 -input ",
		label=input,
		lp="320,202.5",
		pos="e,341.64,189.48 248.43,215.5 272.89,208.67 307.41,199.03 333.75,191.68"];
	Get_Protein_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 4 777.67 350.5 760.34 343.91 736.13 334.7 717.09 327.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 718.11 325.22 710.69 325.02 716.36 329.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 770 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="770,337.5",
		pos="e,709.28,324.48 777.67,350.5 760.34,343.91 736.13,334.7 717.09,327.45"];
	Get_Protein_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 13 771.8 350.76 770.52 350.48 769.25 350.23 768 350 747.59 346.29 693.54 351.3 675 342 670.22 339.6 671.64 335.67 \
667 333 653.13 325 636.05 320.73 621 318.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 621.64 316.08 614.38 317.6 621 320.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 692 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="692,337.5",
		pos="e,612.88,317.4 771.8,350.76 770.52,350.48 769.25,350.23 768,350 747.59,346.29 693.54,351.3 675,342 670.22,339.6 671.64,335.67 667,\
333 653.13,325 636.05,320.73 621,318.47"];
	Convert_PAF_Alignments -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 4 532.05 260.5 516.69 253.97 495.3 244.86 478.35 237.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 479.71 235.56 472.31 235.07 477.79 240.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 520.5 245.6 0 21 5 -align ",
		label=align,
		lp="520.5,247.5",
		pos="e,470.91,234.48 532.05,260.5 516.69,253.97 495.3,244.86 478.35,237.64"];
	Filter_Protein_Compartments -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 4 338.07 170.71 309 163.61 267.08 153.37 236.31 145.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 237.2 143.54 229.82 144.26 236.03 148.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 311 155.6 0 22 5 -input ",
		label=input,
		lp="311,157.5",
		pos="e,228.35,143.9 338.07,170.71 309,163.61 267.08,153.37 236.31,145.85"];
	Compute_Gencode -> Compute_Gencode_int	[_draw_="c 7 -#000000 B 4 708.04 395.71 707.44 390.59 706.66 383.85 705.94 377.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 708.38 377.44 705.14 370.77 703.51 378 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717 380.6 0 22 5 -input ",
		label=input,
		lp="717,382.5",
		pos="e,704.96,369.27 708.04,395.71 707.44,390.59 706.66,383.85 705.94,377.67"];
	Remap_cross_origin_alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 435.39 215.5 423.81 209.2 407.85 200.51 394.84 193.43 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 430 200.6 0 22 5 -input ",
		label=input,
		lp="430,202.5",
		pos="e,387.58,189.48 435.39,215.5 423.81,209.2 407.85,200.51 394.84,193.43"];
	Get_Genomic_FASTA -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 7 560.2 350.55 536.39 340.97 500.18 323.2 478 297 470.82 288.52 461.4 260.46 455.8 242.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 458.18 241.69 453.82 235.7 453.49 243.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 513 290.6 0 70 16 -delta_seqs_input ",
		label=delta_seqs_input,
		lp="513,292.5",
		pos="e,453.38,234.25 560.2,350.55 536.39,340.97 500.18,323.2 478,297 470.82,288.52 461.4,260.46 455.8,242.26"];
	Get_Genomic_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 10 606.47 350.57 612.31 348.08 618.51 345.16 624 342 629.78 338.67 630.09 336.09 636 333 640.5 330.64 645.4 328.52 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 650.82 329.05 656.58 324.38 649.17 324.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 653 335.6 0 34 6 -genome ",
		label=genome,
		lp="653,337.5",
		pos="e,658.01,323.87 606.47,350.57 612.31,348.08 618.51,345.16 624,342 629.78,338.67 630.09,336.09 636,333 640.5,330.64 645.4,328.52 \
650.32,326.63"];
	Get_Genomic_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 580.37 350.5 579.4 347.83 578.49 344.84 578 342 577.32 338.06 577.32 336.94 578 333 578.03 332.82 578.06 332.64 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 580.39 333.36 579.95 325.95 575.68 332.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 595 335.6 0 34 6 -genome ",
		label=genome,
		lp="595,337.5",
		pos="e,580.37,324.5 580.37,350.5 579.4,347.83 578.49,344.84 578,342 577.32,338.06 577.32,336.94 578,333 578.03,332.82 578.06,332.64 578.1,\
332.47"];
	Sort_Short_Protein_Alignments -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 4 254.32 260.71 248.22 254.88 239.91 246.93 232.77 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.5 238.38 227.74 235.31 231.11 241.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272.5 245.6 0 55 12 -sorted_seeds ",
		label=sorted_seeds,
		lp="272.5,247.5",
		pos="e,226.65,234.27 254.32,260.71 248.22,254.88 239.91,246.93 232.77,240.12"];
	Align_Short_Proteins -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 4 328.8 305.5 316.67 299.14 299.9 290.35 286.33 283.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 287.84 281.26 280.51 280.18 285.57 285.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323 290.6 0 22 5 -input ",
		label=input,
		lp="323,292.5",
		pos="e,279.17,279.48 328.8,305.5 316.67,299.14 299.9,290.35 286.33,283.23"];
	Run_Miniprot_fast -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 660.33 305.5 639.16 298.76 609.4 289.28 586.43 281.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 587.47 279.73 580.06 279.94 585.98 284.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 638 290.6 0 14 3 -paf ",
		label=paf,
		lp="638,292.5",
		pos="e,578.62,279.48 660.33,305.5 639.16,298.76 609.4,289.28 586.43,281.97"];
	Filter_Short_Sequences -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 7 403.45 350.57 393.37 347.57 383.57 344.36 379 342 372.59 338.69 366.16 334.16 360.64 329.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 362.33 328.02 355.37 325.45 359.2 331.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 393 335.6 0 28 6 -seqids ",
		label=seqids,
		lp="393,337.5",
		pos="e,354.2,324.48 403.45,350.57 393.37,347.57 383.57,344.36 379,342 372.59,338.69 366.16,334.16 360.64,329.8"];
	Run_Miniprot_slow -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 577.83 305.71 573.67 300.12 568.06 292.58 563.13 285.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 565.2 284.63 559.05 280.48 561.27 287.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 577 290.6 0 14 3 -paf ",
		label=paf,
		lp="577,292.5",
		pos="e,558.15,279.27 577.83,305.71 573.67,300.12 568.06,292.58 563.13,285.96"];
}