digraph workflow {
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		go	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 448.5 16.5 467.5 45.5 467.5 45.5 448.5 ",
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		align	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 218.5 35.5 218.5 54.5 259.5 54.5 259.5 35.5 ",
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			pos="239,45",
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			width=0.56944];
	}
	Seed_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 352.5 305.5 352.5 324.5 489.5 324.5 489.5 305.5 ",
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		fillcolor="#F3CEA1",
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		label="Seed Protein Alignments",
		pos="421,315",
		rects="352.5,305.5,489.5,324.5",
		width=1.9028];
	asn_cache -> Seed_Protein_Alignments	[_draw_="c 7 -#000000 B 7 545.1 448.88 539.4 433.7 525.54 400.53 506 378 488.04 357.29 461.92 339.56 443.39 328.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 445.03 326.55 437.75 325.12 442.55 330.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 534 380.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="534,382.5",
		pos="e,436.44,324.35 545.1,448.88 539.4,433.7 525.54,400.53 506,378 488.04,357.29 461.92,339.56 443.39,328.42"];
	compart_filter_prosplign	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 160.5 125.5 160.5 144.5 405.5 144.5 405.5 125.5 ",
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		pos="283,135",
		rects="160.5,125.5,405.5,144.5",
		width=3.4028];
	asn_cache -> compart_filter_prosplign	[_draw_="c 7 -#000000 B 22 562.73 448.5 575.86 439.71 593 424.66 593 406 593 406 593 406 593 336.5 593 322.16 595.83 315.44 586 305 577.13 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.97 142.85 403.77 144.62 410.5 147.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 580 290.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="580,292.5",
		pos="e,402.26,144.47 562.73,448.5 575.86,439.71 593,424.66 593,406 593,406 593,406 593,336.5 593,322.16 595.83,315.44 586,305 577.13,\
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	Sort_Seed_Hits	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 209 215.5 209 234.5 349 234.5 349 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 222.5 0 124 26 -Sort Seed Hits, align_sort ",
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		pos="279,225",
		rects="209,215.5,349,234.5",
		width=1.9444];
	asn_cache -> Sort_Seed_Hits	[_draw_="c 7 -#000000 B 10 551.35 448.84 556.85 434.16 566.33 402.51 557 378 549.27 357.7 509.89 317.33 492 305 440.94 269.82 372.26 248.05 \
326.86 236.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 327.52 234.13 320.14 234.82 326.34 238.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 553 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
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		pos="e,318.67,234.45 551.35,448.84 556.85,434.16 566.33,402.51 557,378 549.27,357.7 509.89,317.33 492,305 440.94,269.82 372.26,248.05 \
326.86,236.49"];
	Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 194 170.5 194 189.5 364 189.5 364 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 177.5 0 154 31 -Filter Full-Coverage Alignments ",
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		pos="279,180",
		rects="194,170.5,364,189.5",
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	asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 22 552.99 448.95 555.74 444.18 558.99 437.93 561 432 565.78 417.91 569.76 411.95 575 342 575.3 338.01 577.44 336.17 \
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371.86 187.63 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 567 313.1 0 44 9 -asn_cache ",
		label=asn_cache,
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		pos="e,363.66,186.92 552.99,448.95 555.74,444.18 558.99,437.93 561,432 565.78,417.91 569.76,411.95 575,342 575.3,338.01 577.44,336.17 \
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371.86,187.63"];
	Filter_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 132.5 80.5 132.5 99.5 269.5 99.5 269.5 80.5 ",
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		rects="132.5,80.5,269.5,99.5",
		width=1.9028];
	asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 10 569.27 448.52 585.82 440.35 606 426.25 606 406 606 406 606 406 606 134 606 101.33 394.92 93.42 277.53 91.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.79 89.1 270.76 91.45 277.72 94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 628 268.1 0 44 9 -asn_cache ",
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		pos="e,269.24,91.423 569.27,448.52 585.82,440.35 606,426.25 606,406 606,406 606,406 606,134 606,101.33 394.92,93.42 277.53,91.547"];
	Seed_Search_Compartments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 196 305.5 196 324.5 348 324.5 348 305.5 ",
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		fillcolor="#F3CEA1",
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		pos="272,315",
		rects="196,305.5,348,324.5",
		width=2.1111];
	asn_cache -> Seed_Search_Compartments	[_draw_="c 7 -#000000 B 10 529.57 448.5 494.23 432.07 419.63 396.71 411 387 394 367.87 410.92 349.07 391 333 389.01 331.39 371.11 328.53 \
349.77 325.6 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 433 380.6 0 44 9 -asn_cache ",
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		pos="e,341.45,324.48 529.57,448.5 494.23,432.07 419.63,396.71 411,387 394,367.87 410.92,349.07 391,333 389.01,331.39 371.11,328.53 349.77,\
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	uniColl_asn_cache -> Seed_Protein_Alignments	[_draw_="c 7 -#000000 B 13 113.18 448.51 128.4 435.67 157.77 410.34 181 387 184.78 383.21 184.16 380.29 189 378 209.61 368.26 374.85 382.36 \
394 370 400.92 365.53 409.52 346.2 415.13 331.94 ",
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		label=uniColl_asn_cache,
		lp="227,382.5",
		pos="e,418.05,324.28 113.18,448.51 128.4,435.67 157.77,410.34 181,387 184.78,383.21 184.16,380.29 189,378 209.61,368.26 374.85,382.36 \
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	uniColl_asn_cache -> compart_filter_prosplign	[_draw_="c 7 -#000000 B 22 92.98 448.74 82.95 439.47 69 423.45 69 406 69 406 69 406 69 314 69 302.44 61.45 296.75 69 288 84.85 269.63 105.24 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 197.2 148.38 203.66 144.74 196.35 143.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 107 290.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="107,292.5",
		pos="e,205.16,144.48 92.983,448.74 82.954,439.47 69,423.45 69,406 69,406 69,406 69,314 69,302.44 61.451,296.75 69,288 84.849,269.63 105.24,\
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	uniColl_asn_cache -> Sort_Seed_Hits	[_draw_="c 7 -#000000 B 13 99.68 448.71 91.45 426.62 72.82 365.79 103 333 119.43 315.15 135.21 335.66 157 325 194.56 306.63 192.03 285.71 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.71 240.91 262.49 235.24 255.22 236.69 ",
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		label=uniColl_asn_cache,
		lp="141,337.5",
		pos="e,263.79,234.47 99.683,448.71 91.446,426.62 72.818,365.79 103,333 119.43,315.15 135.21,335.66 157,325 194.56,306.63 192.03,285.71 \
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	uniColl_asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 19 96.99 448.81 90.47 439.1 81 422.2 81 406 81 406 81 406 81 336.5 81 322.49 70.71 315.48 80 305 89.8 293.94 133.22 \
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		label=uniColl_asn_cache,
		lp="118,315",
		pos="e,253.61,189.46 96.988,448.81 90.475,439.1 81,422.2 81,406 81,406 81,406 81,336.5 81,322.49 70.711,315.48 80,305 89.798,293.94 133.22,\
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	uniColl_asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 10 83.1 448.65 67 440.41 47 426.12 47 406 47 406 47 406 47 134 47 116.18 85.72 105.42 124.33 99.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 124.52 101.57 131.06 98.08 123.77 96.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 85 268.1 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="85,270",
		pos="e,132.56,97.843 83.099,448.65 67.003,440.41 47,426.12 47,406 47,406 47,406 47,134 47,116.18 85.722,105.42 124.33,99.121"];
	uniColl_asn_cache -> Seed_Search_Compartments	[_draw_="c 7 -#000000 B 7 100.84 448.64 97.35 433.05 92.32 399.22 108 378 122.78 357.99 185.55 338.26 229 326.6 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 146 380.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="146,382.5",
		pos="e,237.14,324.45 100.84,448.64 97.348,433.05 92.321,399.22 108,378 122.78,357.99 185.55,338.26 229,326.6"];
	gc_assembly -> compart_filter_prosplign	[_draw_="c 7 -#000000 B 16 635.13 448.56 644.28 439.14 657 422.99 657 406 657 406 657 406 657 291.5 657 221.84 617.76 205.79 558 170 536.42 \
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		label=gc_assembly,
		lp="683.5,292.5",
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	Compute_Gencode	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 281 395.5 281 414.5 387 414.5 387 395.5 ",
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		label=compute_gencode,
		pos="334,405",
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		width=1.4722];
	tax_sql_file -> Compute_Gencode	[_draw_="c 7 -#000000 B 4 334.83 448.58 334.7 441.52 334.49 431.24 334.32 422.55 ",
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		label=taxon_db,
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	compartments -> Seed_Search_Compartments	[_draw_="c 7 -#000000 B 10 216.23 448.55 230.95 436.69 256.05 413.57 266 387 266 387 266 350 266 350 266.51 344.2 267.49 337.91 268.52 332.33 ",
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		label=compartments,
		lp="296,382.5",
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	blastdb_dir -> Seed_Protein_Alignments	[_draw_="c 7 -#000000 B 7 472.95 448.93 470.89 434.37 465.64 402.93 456 378 449.5 361.2 439.06 343.43 431.27 331.24 ",
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		label=blastdb_dir,
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	taxid -> Compute_Gencode	[_draw_="c 7 -#000000 B 7 282.9 448.71 290.5 441.71 301.79 431.49 312 423 313.39 421.85 314.84 420.67 316.3 419.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 317.49 421.67 321.49 415.43 314.47 417.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322.5 425.6 0 21 5 -taxid ",
		label=taxid,
		lp="322.5,427.5",
		pos="e,322.68,414.49 282.9,448.71 290.5,441.71 301.79,431.49 312,423 313.39,421.85 314.84,420.67 316.3,419.49"];
	all_prots -> Seed_Protein_Alignments	[_draw_="c 7 -#000000 B 16 404.09 448.78 402.4 436.31 397.89 412.25 387 395 384.14 390.48 380.19 391.88 378 387 376.36 383.35 375.61 381.21 \
378 378 385.49 367.97 396.15 378.85 405 370 414.92 360.08 418.74 344.33 420.19 332.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.61 332.85 420.77 325.67 417.73 332.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 392 380.6 0 28 6 -seqids ",
		label=seqids,
		lp="392,382.5",
		pos="e,420.9,324.16 404.09,448.78 402.4,436.31 397.89,412.25 387,395 384.14,390.48 380.19,391.88 378,387 376.36,383.35 375.61,381.21 \
378,378 385.49,367.97 396.15,378.85 405,370 414.92,360.08 418.74,344.33 420.19,332.39"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 227 260.5 227 279.5 331 279.5 331 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 267.5 0 88 18 -file concatenation ",
		height=0.27778,
		label="file concatenation",
		pos="279,270",
		rects="227,260.5,331,279.5",
		width=1.4444];
	Seed_Protein_Alignments -> cat	[_draw_="c 7 -#000000 B 4 392.95 305.5 370.58 298.73 339.11 289.2 314.9 281.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 315.85 279.6 308.44 279.92 314.43 284.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 382.5 290.6 0 41 11 -file_in_1st ",
		label=file_in_1st,
		lp="382.5,292.5",
		pos="e,307,279.48 392.95,305.5 370.58,298.73 339.11,289.2 314.9,281.87"];
	Compute_Gencode_int	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 266.5 350.5 266.5 369.5 393.5 369.5 393.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 330 357.5 0 111 19 -Compute_Gencode_int ",
		height=0.27778,
		label=Compute_Gencode_int,
		pos="330,360",
		rects="266.5,350.5,393.5,369.5",
		width=1.7639];
	Compute_Gencode_int -> Seed_Protein_Alignments	[_draw_="c 7 -#000000 B 7 335.77 350.53 340.13 344.76 346.61 337.4 354 333 357.64 330.83 361.56 328.94 365.6 327.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.34 329.62 372.07 324.91 364.66 325.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379.5 335.6 0 51 10 -db_gencode ",
		label=db_gencode,
		lp="379.5,337.5",
		pos="e,373.49,324.39 335.77,350.53 340.13,344.76 346.61,337.4 354,333 357.64,330.83 361.56,328.94 365.6,327.28"];
	Compute_Gencode_int -> Seed_Search_Compartments	[_draw_="c 7 -#000000 B 7 293.53 350.62 288.91 348.39 284.56 345.57 281 342 278.34 339.34 276.47 335.86 275.14 332.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.56 331.84 273.35 325.72 272.83 333.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306.5 335.6 0 51 10 -db_gencode ",
		label=db_gencode,
		lp="306.5,337.5",
		pos="e,272.96,324.26 293.53,350.62 288.91,348.39 284.56,345.57 281,342 278.34,339.34 276.47,335.86 275.14,332.31"];
	compart_filter_prosplign -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 4 266.8 125.5 254.67 119.14 237.9 110.35 224.33 103.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 225.84 101.26 218.51 100.18 223.57 105.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 268.5 110.6 0 39 9 -prosplign ",
		label=prosplign,
		lp="268.5,112.5",
		pos="e,217.17,99.478 266.8,125.5 254.67,119.14 237.9,110.35 224.33,103.23"];
	cat -> Sort_Seed_Hits	[_draw_="c 7 -#000000 B 4 279 260.71 279 255.59 279 248.85 279 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.45 242.78 279 235.78 276.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303.5 245.6 0 49 12 -blast_aligns ",
		label=blast_aligns,
		lp="303.5,247.5",
		pos="e,279,234.27 279,260.71 279,255.59 279,248.85 279,242.67"];
	Compute_Gencode -> Compute_Gencode_int	[_draw_="c 7 -#000000 B 7 335.07 395.76 335.56 390.63 335.85 383.9 335 378 334.97 377.82 334.95 377.63 334.92 377.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.3 376.9 333.28 370.67 332.54 378.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 346 380.6 0 22 5 -input ",
		label=input,
		lp="346,382.5",
		pos="e,332.92,369.2 335.07,395.76 335.56,390.63 335.85,383.9 335,378 334.97,377.82 334.95,377.63 334.92,377.45"];
	Sort_Seed_Hits -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 4 279 215.71 279 210.59 279 203.85 279 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.45 197.78 279 190.78 276.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306.5 200.6 0 55 12 -sorted_seeds ",
		label=sorted_seeds,
		lp="306.5,202.5",
		pos="e,279,189.27 279,215.71 279,210.59 279,203.85 279,197.67"];
	Filter_Full_Coverage_Alignments -> compart_filter_prosplign	[_draw_="c 7 -#000000 B 4 279.77 170.71 280.25 165.59 280.87 158.85 281.45 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.88 152.97 282.09 145.77 279 152.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 301 155.6 0 40 9 -seed_hits ",
		label=seed_hits,
		lp="301,157.5",
		pos="e,282.23,144.27 279.77,170.71 280.25,165.59 280.87,158.85 281.45,152.67"];
	Filter_Full_Coverage_Alignments -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 7 195.07 170.5 162.63 165.33 130.92 157.28 121 145 105.76 126.14 133.32 111.34 160.15 102.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 160.71 104.44 166.6 99.93 159.18 99.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 139.5 133.1 0 37 10 -blast_full ",
		label=blast_full,
		lp="139.5,135",
		pos="e,168.04,99.456 195.07,170.5 162.63,165.33 130.92,157.28 121,145 105.76,126.14 133.32,111.34 160.15,102.05"];
	Filter_Protein_Alignments -> align_non_match	[_draw_="c 7 -#000000 B 4 193.87 80.71 188.95 75 182.29 67.26 176.51 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.52 59.12 172.1 55.41 174.81 62.32 ",
		pos="e,171.11,54.265 193.87,80.709 188.95,74.998 182.29,67.258 176.51,60.535"];
	Filter_Protein_Alignments -> align	[_draw_="c 7 -#000000 B 4 208.33 80.71 213.37 75 220.21 67.26 226.15 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 227.89 62.27 230.69 55.4 224.22 59.02 ",
		pos="e,231.7,54.265 208.33,80.709 213.37,74.998 220.21,67.258 226.15,60.535"];
	Seed_Search_Compartments -> cat	[_draw_="c 7 -#000000 B 4 273.35 305.71 274.18 300.59 275.28 293.85 276.29 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 278.7 288.06 277.41 280.76 273.87 287.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 298 290.6 0 44 11 -file_in_2nd ",
		label=file_in_2nd,
		lp="298,292.5",
		pos="e,277.65,279.27 273.35,305.71 274.18,300.59 275.28,293.85 276.29,287.67"];
}