digraph workflow {
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		bgcolor="#eeeeee",
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	subgraph cluster_inputs {
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			lheight=0.15,
			lp="197,485.5",
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		all_prots	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 280.5 448.5 280.5 467.5 339.5 467.5 339.5 448.5 ",
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		taxon_db	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 388.5 448.5 388.5 467.5 449.5 467.5 449.5 448.5 ",
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			width=0.84722];
		uniColl_asn_cache	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 536.5 448.5 536.5 467.5 643.5 467.5 643.5 448.5 ",
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		compartments	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 155 448.5 155 467.5 243 467.5 243 448.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 199 455.5 0 72 12 -compartments ",
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			rects="155,448.5,243,467.5",
			width=1.2222];
		taxid	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 343.5 448.5 343.5 467.5 384.5 467.5 384.5 448.5 ",
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			label=taxid,
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 682 455.5 0 52 9 -asn_cache ",
			fillcolor="#94DDF4",
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			label=asn_cache,
			pos="682,458",
			rects="648,448.5,716,467.5",
			width=0.94444];
		genomic_ids	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454 448.5 454 467.5 532 467.5 532 448.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 493 455.5 0 62 11 -genomic_ids ",
			fillcolor="#94DDF4",
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			label=genomic_ids,
			pos="493,458",
			rects="454,448.5,532,467.5",
			width=1.0833];
		go	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 247.5 448.5 247.5 467.5 276.5 467.5 276.5 448.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 262 455.5 0 13 2 -go ",
			fillcolor="#94DDF4",
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			label=go,
			pos="262,458",
			rects="247.5,448.5,276.5,467.5",
			width=0.40278];
		blastdb_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 720.5 448.5 720.5 467.5 791.5 467.5 791.5 448.5 ",
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			fillcolor="#94DDF4",
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			label=blastdb_dir,
			pos="756,458",
			rects="720.5,448.5,791.5,467.5",
			width=0.98611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 675 8 675 63 783 63 783 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 729 15 0 92 16 -Workflow Outputs ",
			bb="675,8,783,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="729,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		align	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 708.5 35.5 708.5 54.5 749.5 54.5 749.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729 42.5 0 25 5 -align ",
			fillcolor="#94DDF4",
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			label=align,
			pos="729,45",
			rects="708.5,35.5,749.5,54.5",
			width=0.56944];
	}
	Filter_Protein_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 558 170.5 558 189.5 626 189.5 626 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 592 177.5 0 52 12 -align_filter ",
		height=0.27778,
		label=align_filter,
		pos="592,180",
		rects="558,170.5,626,189.5",
		width=0.94444];
	all_prots -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 16 296.72 448.51 290.9 445.24 283.85 441.84 277 440 242.19 430.65 147.13 448.34 115 432 101.76 425.27 94 420.85 94 \
406 94 406 94 406 94 224 94 201.2 429.77 186.85 549.89 182.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 549.74 184.9 556.65 182.2 549.57 180.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 124.5 313.1 0 61 15 -query_allowlist ",
		label=query_allowlist,
		lp="124.5,315",
		pos="e,558.16,182.15 296.72,448.51 290.9,445.24 283.85,441.84 277,440 242.19,430.65 147.13,448.34 115,432 101.76,425.27 94,420.85 94,\
406 94,406 94,406 94,224 94,201.2 429.77,186.85 549.89,182.45"];
	Get_Protein_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 142.5 350.5 142.5 369.5 199.5 369.5 199.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 171 357.5 0 41 8 -getfasta ",
		height=0.27778,
		label=getfasta,
		pos="171,360",
		rects="142.5,350.5,199.5,369.5",
		width=0.79167];
	all_prots -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 13 296.71 448.56 290.89 445.29 283.83 441.88 277 440 240.19 429.86 128.21 446.75 107 415 102.06 407.61 102.42 402.62 \
107 395 113.32 384.49 124.11 377.05 135.05 371.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 135.73 374.24 141.2 369.23 133.8 369.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 117 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="117,405",
		pos="e,142.59,368.64 296.71,448.56 290.89,445.29 283.83,441.88 277,440 240.19,429.86 128.21,446.75 107,415 102.06,407.61 102.42,402.62 \
107,395 113.32,384.49 124.11,377.05 135.05,371.87"];
	Filter_Short_Sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 559 350.5 559 369.5 621 369.5 621 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 590 357.5 0 46 10 -seq_filter ",
		height=0.27778,
		label=seq_filter,
		pos="590,360",
		rects="559,350.5,621,369.5",
		width=0.86111];
	all_prots -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 16 325.27 448.52 331.02 445.56 337.7 442.37 344 440 384.85 424.6 399.32 433.22 439 415 453.23 408.47 453.41 400.67 \
468 395 492.26 385.58 500.86 393.73 526 387 539.27 383.45 553.48 377.87 565.13 372.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 565.98 375.09 571.37 370 563.98 370.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 482 403.1 0 28 6 -seqids ",
		label=seqids,
		lp="482,405",
		pos="e,572.75,369.38 325.27,448.52 331.02,445.56 337.7,442.37 344,440 384.85,424.6 399.32,433.22 439,415 453.23,408.47 453.41,400.67 \
468,395 492.26,385.58 500.86,393.73 526,387 539.27,383.45 553.48,377.87 565.13,372.79"];
	Compute_Gencode	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 129 395.5 129 414.5 235 414.5 235 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 402.5 0 90 15 -compute_gencode ",
		height=0.27778,
		label=compute_gencode,
		pos="182,405",
		rects="129,395.5,235,414.5",
		width=1.4722];
	taxon_db -> Compute_Gencode	[_draw_="c 7 -#000000 B 10 405.29 448.5 399.29 445.23 392.03 441.83 385 440 347.54 430.24 246.82 446.66 211 432 207.51 430.57 201.55 425.44 \
195.93 420.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 197.91 418.63 191.2 415.48 194.49 422.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 230 425.6 0 38 8 -taxon_db ",
		label=taxon_db,
		lp="230,427.5",
		pos="e,190.11,414.42 405.29,448.5 399.29,445.23 392.03,441.83 385,440 347.54,430.24 246.82,446.66 211,432 207.51,430.57 201.55,425.44 \
195.93,420.12"];
	Align_Short_Proteins	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 572.5 305.5 572.5 324.5 709.5 324.5 709.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 641 312.5 0 121 23 -Seed Protein Alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Seed Protein Alignments",
		pos="641,315",
		rects="572.5,305.5,709.5,324.5",
		width=1.9028];
	uniColl_asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 19 612.67 448.5 627.06 441.79 644.5 430.88 653 415 657.19 407.16 658.35 402.1 653 395 645.21 384.67 632.79 397.33 \
625 387 617.5 377.06 624.91 359.37 635 350 644.8 340.9 655.9 352.64 664 342 667.07 337.97 665.64 333.79 662.35 329.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 664.01 328.19 657.14 325.4 660.77 331.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 663 380.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="663,382.5",
		pos="e,656.01,324.4 612.67,448.5 627.06,441.79 644.5,430.88 653,415 657.19,407.16 658.35,402.1 653,395 645.21,384.67 632.79,397.33 625,\
387 617.5,377.06 624.91,359.37 635,350 644.8,340.9 655.9,352.64 664,342 667.07,337.97 665.64,333.79 662.35,329.98"];
	uniColl_asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 16 565.58 448.52 555.59 445.37 543.86 442.06 533 440 478.15 429.57 328.84 446.87 283 415 274.84 409.33 279.03 402.9 \
273 395 266.12 386 264.24 382.85 254 378 235.62 369.28 227.36 373.58 207.46 370.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.04 368.27 200.71 369.41 207.15 373.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 305 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="305,405",
		pos="e,199.22,369.13 565.58,448.52 555.59,445.37 543.86,442.06 533,440 478.15,429.57 328.84,446.87 283,415 274.84,409.33 279.03,402.9 \
273,395 266.12,386 264.24,382.85 254,378 235.62,369.28 227.36,373.58 207.46,370.65"];
	Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 629 215.5 629 234.5 799 234.5 799 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 714 222.5 0 154 31 -Filter Full-Coverage Alignments ",
		height=0.27778,
		label="Filter Full-Coverage Alignments",
		pos="714,225",
		rects="629,215.5,799,234.5",
		width=2.3611];
	uniColl_asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 10 581.53 448.52 574.2 440.59 563.99 428.03 559 415 545.92 380.84 541.26 367.96 552 333 568.28 280.03 630.46 250.97 \
672.87 236.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 673.44 239.34 679.37 234.88 671.96 234.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 590 335.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="590,337.5",
		pos="e,680.81,234.42 581.53,448.52 574.2,440.59 563.99,428.03 559,415 545.92,380.84 541.26,367.96 552,333 568.28,280.03 630.46,250.97 \
672.87,236.95"];
	uniColl_asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 7 595.04 448.63 601.56 436.76 611.56 414.34 607 395 605.48 388.55 602.54 381.93 599.52 376.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 601.85 375.41 596.25 370.56 597.6 377.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 630 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="630,405",
		pos="e,595.49,369.24 595.04,448.63 601.56,436.76 611.56,414.34 607,395 605.48,388.55 602.54,381.93 599.52,376.27"];
	Remap_cross_origin_alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 502.5 215.5 502.5 234.5 607.5 234.5 607.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 555 222.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="555,225",
		rects="502.5,215.5,607.5,234.5",
		width=1.4583];
	uniColl_asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 19 562.74 448.56 525.35 436.93 462.55 417.14 461 415 455.78 407.81 455.8 402.21 461 395 467.57 385.88 477.05 394.95 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.34 242.76 556.31 235.99 554.45 243.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 525 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="525,337.5",
		pos="e,556.18,234.48 562.74,448.56 525.35,436.93 462.55,417.14 461,415 455.78,407.81 455.8,402.21 461,395 467.57,385.88 477.05,394.95 \
485,387 502.89,369.11 488.53,353.75 503,333 517.65,311.99 535.78,319.51 548,297 557.1,280.23 557.78,257.94 556.88,242.84"];
	Convert_PAF_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 414 260.5 414 279.5 470 279.5 470 260.5 ",
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		height=0.27778,
		label=paf2asn,
		pos="442,270",
		rects="414,260.5,470,279.5",
		width=0.77778];
	uniColl_asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 10 564.98 448.54 555.11 445.47 543.62 442.21 533 440 495.7 432.24 466.14 449.96 451 415 441.26 392.52 441.15 320.32 \
441.64 287.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 444.08 287.93 441.76 280.88 439.18 287.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 465 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="465,360",
		pos="e,441.79,279.37 564.98,448.54 555.11,445.47 543.62,442.21 533,440 495.7,432.24 466.14,449.96 451,415 441.26,392.52 441.15,320.32 \
441.64,287.51"];
	Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 721 260.5 721 279.5 807 279.5 807 260.5 ",
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		height=0.27778,
		label=align_sort_ma,
		pos="764,270",
		rects="721,260.5,807,279.5",
		width=1.1944];
	uniColl_asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 25 614.66 448.6 625.12 444.44 637.14 438.83 647 432 665.86 418.93 664.66 408.79 683 395 689.04 390.46 694.11 393.48 \
698 387 700.06 383.57 700.62 381.02 698 378 681.53 359.01 658.47 388.99 642 370 636.18 363.28 635.93 356.49 642 350 660.26 330.48 \
743.47 361.26 762 342 775.71 327.76 773.03 303.51 769.12 287.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 771.53 286.92 767.31 280.82 766.81 288.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 664 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="664,360",
		pos="e,766.91,279.36 614.66,448.6 625.12,444.44 637.14,438.83 647,432 665.86,418.93 664.66,408.79 683,395 689.04,390.46 694.11,393.48 \
698,387 700.06,383.57 700.62,381.02 698,378 681.53,359.01 658.47,388.99 642,370 636.18,363.28 635.93,356.49 642,350 660.26,330.48 \
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	Filter_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 660.5 80.5 660.5 99.5 797.5 99.5 797.5 80.5 ",
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		height=0.27778,
		label="Filter Protein Alignments",
		pos="729,90",
		rects="660.5,80.5,797.5,99.5",
		width=1.9028];
	uniColl_asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 28 566.47 448.51 556.31 445.23 544.21 441.83 533 440 429.86 423.15 400.68 451.45 298 432 275.76 427.79 268.24 428.4 \
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0 321.82 0 248.5 0 248.5 0 248.5 0 134 0 101.59 465.11 93.52 652.31 91.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 652.26 94.04 659.23 91.52 652.21 89.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 137 268.1 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="137,270",
		pos="e,660.75,91.501 566.47,448.51 556.31,445.23 544.21,441.83 533,440 429.86,423.15 400.68,451.45 298,432 275.76,427.79 268.24,428.4 \
250,415 241.05,408.42 244.2,401.23 235,395 217.28,383.01 155.02,386.98 142,370 124.07,346.62 171.89,329.14 155,305 112.96,244.93 \
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	Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 329 395.5 329 414.5 437 414.5 437 395.5 ",
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		height=0.27778,
		label=compart_annot2all,
		pos="383,405",
		rects="329,395.5,437,414.5",
		width=1.5];
	compartments -> Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 B 7 172.46 448.53 157.02 442.28 142.33 433.12 152 423 158 416.72 286.24 416.04 321.88 414.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 321.55 417.34 328.42 414.55 321.3 412.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 164.5 425.6 0 25 6 -aligns ",
		label=aligns,
		lp="164.5,427.5",
		pos="e,329.93,414.47 172.46,448.53 157.02,442.28 142.33,433.12 152,423 158,416.72 286.24,416.04 321.88,414.87"];
	compartments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 19 155.34 452.83 104.09 446.69 26 432.93 26 406 26 406 26 406 26 336.5 26 322.44 21.19 316.7 29 305 42.13 285.32 \
61.74 298.88 76 280 93.81 256.42 69.19 235.98 90 215 122.07 182.67 434.99 180.45 549.93 180.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 549.66 183.19 556.67 180.76 549.67 178.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 59 313.1 0 60 12 -compartments ",
		label=compartments,
		lp="59,315",
		pos="e,558.18,180.76 155.34,452.83 104.09,446.69 26,432.93 26,406 26,406 26,406 26,336.5 26,322.44 21.194,316.7 29,305 42.133,285.32 \
61.737,298.88 76,280 93.814,256.42 69.187,235.98 90,215 122.07,182.67 434.99,180.45 549.93,180.74"];
	taxid -> Compute_Gencode	[_draw_="c 7 -#000000 B 10 354.89 448.69 350.67 445.36 345.4 441.87 340 440 323.28 434.21 193.19 444.82 181 432 178.62 429.49 177.75 426.16 \
177.7 422.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 180.12 423.13 178.67 415.85 175.27 422.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 191.5 425.6 0 21 5 -taxid ",
		label=taxid,
		lp="191.5,427.5",
		pos="e,178.89,414.35 354.89,448.69 350.67,445.36 345.4,441.87 340,440 323.28,434.21 193.19,444.82 181,432 178.62,429.49 177.75,426.16 \
177.7,422.72"];
	asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 19 700.06 448.6 706.33 445.77 713.43 442.66 720 440 729.64 436.1 736.03 440.52 742 432 747.25 424.51 740.86 357.02 \
735 350 728.07 341.69 722.18 345.68 712 342 701.29 338.13 698.69 336.94 688 333 682.98 331.15 677.65 329.2 672.45 327.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 673.29 325.02 665.87 324.94 671.62 329.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 764 380.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="764,382.5",
		pos="e,664.45,324.42 700.06,448.6 706.33,445.77 713.43,442.66 720,440 729.64,436.1 736.03,440.52 742,432 747.25,424.51 740.86,357.02 \
735,350 728.07,341.69 722.18,345.68 712,342 701.29,338.13 698.69,336.94 688,333 682.98,331.15 677.65,329.2 672.45,327.32"];
	asn_cache -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 25 698.3 448.61 704.89 445.51 712.67 442.21 720 440 740.71 433.76 747.39 438.55 768 432 811.76 418.08 836.61 425.9 \
861 387 873.75 366.67 875.62 352.03 861 333 852.59 322.06 839.92 335.53 831 325 821.91 314.27 828 307.56 828 293.5 828 293.5 828 \
293.5 828 224 828 185.06 702.07 180.06 634.19 180.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 634.31 177.75 627.33 180.24 634.34 182.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 853 313.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="853,315",
		pos="e,625.81,180.24 698.3,448.61 704.89,445.51 712.67,442.21 720,440 740.71,433.76 747.39,438.55 768,432 811.76,418.08 836.61,425.9 \
861,387 873.75,366.67 875.62,352.03 861,333 852.59,322.06 839.92,335.53 831,325 821.91,314.27 828,307.56 828,293.5 828,293.5 828,\
293.5 828,224 828,185.06 702.07,180.06 634.19,180.2"];
	asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 13 665.7 448.64 659.1 445.54 651.33 442.24 644 440 582.3 421.13 545.73 461.5 501 415 489.5 403.04 508.34 389.09 496 \
378 484.79 367.93 257.01 371.74 207.46 369.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 207.85 367.47 200.7 369.44 207.51 372.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 523 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="523,405",
		pos="e,199.19,369.33 665.7,448.64 659.1,445.54 651.33,442.24 644,440 582.3,421.13 545.73,461.5 501,415 489.5,403.04 508.34,389.09 496,\
378 484.79,367.93 257.01,371.74 207.46,369.9"];
	asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 19 698.73 448.64 705.25 445.61 712.86 442.36 720 440 735.56 434.85 741.16 438.96 756 432 791 415.59 803.49 406.22 \
817 370 820.98 359.32 821.27 298.28 809 260 806.32 251.65 806.14 248.08 799 243 796.32 241.09 793.47 239.39 790.51 237.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 791.71 235.71 784.32 235.06 789.69 240.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 841 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="841,337.5",
		pos="e,782.95,234.43 698.73,448.64 705.25,445.61 712.86,442.36 720,440 735.56,434.85 741.16,438.96 756,432 791,415.59 803.49,406.22 817,\
370 820.98,359.32 821.27,298.28 809,260 806.32,251.65 806.14,248.08 799,243 796.32,241.09 793.47,239.39 790.51,237.86"];
	Get_Genomic_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 334.5 350.5 334.5 369.5 439.5 369.5 439.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 387 357.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="387,360",
		rects="334.5,350.5,439.5,369.5",
		width=1.4583];
	asn_cache -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 13 668.69 448.63 655.55 440.76 634.63 429.28 615 423 592.31 415.74 582.64 426.9 562 415 552.14 409.31 555.04 401.92 \
546 395 511.04 368.23 492.39 375.58 447.8 370.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 448.24 368.01 440.98 369.54 447.61 372.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 584 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="584,405",
		pos="e,439.48,369.35 668.69,448.63 655.55,440.76 634.63,429.28 615,423 592.31,415.74 582.64,426.9 562,415 552.14,409.31 555.04,401.92 \
546,395 511.04,368.23 492.39,375.58 447.8,370.42"];
	asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 13 683.09 448.52 683.63 441.4 683.56 431.12 680 423 673.06 407.17 668.1 403.41 653 395 638.3 386.81 630.77 395.05 \
616 387 610.65 384.08 605.68 379.73 601.55 375.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 603.61 374.06 597.14 370.43 599.94 377.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 697 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="697,405",
		pos="e,596.14,369.29 683.09,448.52 683.63,441.4 683.56,431.12 680,423 673.06,407.17 668.1,403.41 653,395 638.3,386.81 630.77,395.05 616,\
387 610.65,384.08 605.68,379.73 601.55,375.42"];
	asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 22 694.11 448.6 700.91 443.83 709.5 437.68 717 432 729.72 422.36 766.1 401.4 773 387 774.73 383.39 774.73 381.61 \
773 378 761.9 354.92 743.99 362.01 728 342 716.58 327.72 723.39 317.46 710 305 702.99 298.48 698.69 301.01 690 297 649.3 278.22 \
603.39 253.23 576.96 238.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 578.35 236.42 571.05 235.13 575.95 240.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 750 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="750,337.5",
		pos="e,569.73,234.39 694.11,448.6 700.91,443.83 709.5,437.68 717,432 729.72,422.36 766.1,401.4 773,387 774.73,383.39 774.73,381.61 773,\
378 761.9,354.92 743.99,362.01 728,342 716.58,327.72 723.39,317.46 710,305 702.99,298.48 698.69,301.01 690,297 649.3,278.22 603.39,\
253.23 576.96,238.45"];
	asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 31 693.06 448.74 702.24 441.14 714.63 428.95 720 415 723.2 406.71 723.52 403.16 720 395 715.64 384.89 710.61 384.85 \
702 378 696.99 374.01 693.93 375.06 690 370 684.23 362.56 690.11 356.18 683 350 669.32 338.1 659.81 348.8 643 342 636.14 339.23 \
635.94 335.57 629 333 604.59 323.97 596.44 330.47 571 325 527.97 315.74 515.25 316.92 476 297 469.48 293.69 462.94 289.08 457.37 \
284.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.01 282.84 452.07 280.24 455.88 286.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 712 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="712,360",
		pos="e,450.9,279.28 693.06,448.74 702.24,441.14 714.63,428.95 720,415 723.2,406.71 723.52,403.16 720,395 715.64,384.89 710.61,384.85 \
702,378 696.99,374.01 693.93,375.06 690,370 684.23,362.56 690.11,356.18 683,350 669.32,338.1 659.81,348.8 643,342 636.14,339.23 \
635.94,335.57 629,333 604.59,323.97 596.44,330.47 571,325 527.97,315.74 515.25,316.92 476,297 469.48,293.69 462.94,289.08 457.37,\
284.66"];
	Sort_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 696.5 125.5 696.5 144.5 761.5 144.5 761.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729 132.5 0 49 10 -align_sort ",
		height=0.27778,
		label=align_sort,
		pos="729,135",
		rects="696.5,125.5,761.5,144.5",
		width=0.90278];
	asn_cache -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 13 697.87 448.59 704.53 445.41 712.47 442.06 720 440 792.33 420.2 879 458.5 879 383.5 879 383.5 879 383.5 879 179 \
879 156.16 813.91 144.75 769.49 139.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 769.91 137.21 762.68 138.88 769.37 142.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 901 290.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="901,292.5",
		pos="e,761.18,138.71 697.87,448.59 704.53,445.41 712.47,442.06 720,440 792.33,420.2 879,458.5 879,383.5 879,383.5 879,383.5 879,179 879,\
156.16 813.91,144.75 769.49,139.63"];
	asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 22 699.6 448.59 705.96 445.69 713.23 442.54 720 440 731.32 435.75 735.91 438.67 746 432 767.84 417.57 775.01 411.58 \
784 387 785.37 383.24 785.53 381.7 784 378 782.08 373.35 778.01 374.61 776 370 768.72 353.28 777.72 305.61 773 288 772.9 287.63 \
772.79 287.26 772.68 286.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 775.03 286.15 769.98 280.72 770.54 288.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 798 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="798,360",
		pos="e,769.37,279.34 699.6,448.59 705.96,445.69 713.23,442.54 720,440 731.32,435.75 735.91,438.67 746,432 767.84,417.57 775.01,411.58 \
784,387 785.37,383.24 785.53,381.7 784,378 782.08,373.35 778.01,374.61 776,370 768.72,353.28 777.72,305.61 773,288 772.9,287.63 \
772.79,287.26 772.68,286.89"];
	asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 13 697.45 448.57 704.18 445.31 712.28 441.9 720 440 766.12 428.65 931 453.49 931 406 931 406 931 406 931 134 931 \
107.34 862.86 97.15 805.73 93.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 806.04 90.85 798.9 92.85 805.73 95.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 953 268.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="953,270",
		pos="e,797.39,92.756 697.45,448.57 704.18,445.31 712.28,441.9 720,440 766.12,428.65 931,453.49 931,406 931,406 931,406 931,134 931,107.34 \
862.86,97.146 805.73,93.281"];
	genomic_ids -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 13 474.5 448.52 467.03 445.4 458.24 442.12 450 440 407.91 429.15 284.7 447.64 256 415 243.21 400.46 261.13 385.44 \
279 378 298.14 370.03 306.06 372.76 326.18 370.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.43 373 333.04 369.64 325.78 368.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 266 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="266,405",
		pos="e,334.54,369.44 474.5,448.52 467.03,445.4 458.24,442.12 450,440 407.91,429.15 284.7,447.64 256,415 243.21,400.46 261.13,385.44 279,\
378 298.14,370.03 306.06,372.76 326.18,370.56"];
	blastdb_dir -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 10 785.68 448.55 793.62 444.79 801.3 439.48 806 432 825.41 401.15 827.72 379.98 807 350 796.42 334.69 755.76 326.21 \
717.34 321.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 717.92 319.15 710.68 320.78 717.36 324.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 844 380.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="844,382.5",
		pos="e,709.18,320.61 785.68,448.55 793.62,444.79 801.3,439.48 806,432 825.41,401.15 827.72,379.98 807,350 796.42,334.69 755.76,326.21 \
717.34,321.55"];
	Compute_Gencode_int	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 203.5 350.5 203.5 369.5 330.5 369.5 330.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 267 357.5 0 111 19 -Compute_Gencode_int ",
		height=0.27778,
		label=Compute_Gencode_int,
		pos="267,360",
		rects="203.5,350.5,330.5,369.5",
		width=1.7639];
	Compute_Gencode -> Compute_Gencode_int	[_draw_="c 7 -#000000 B 4 198.79 395.5 211.37 389.14 228.75 380.35 242.82 373.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.75 375.51 248.89 370.16 241.54 371.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 243 380.6 0 22 5 -input ",
		label=input,
		lp="243,382.5",
		pos="e,250.24,369.48 198.79,395.5 211.37,389.14 228.75,380.35 242.82,373.23"];
	Extract_Proteins_From_Compartments -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 7 348.31 395.51 324.88 389.98 293.21 382.92 265 378 240.19 373.68 231.79 375.18 207.35 370.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.04 368.39 200.7 369.46 207.1 373.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 320 380.6 0 20 6 -gilist ",
		label=gilist,
		lp="320,382.5",
		pos="e,199.21,369.18 348.31,395.51 324.88,389.98 293.21,382.92 265,378 240.19,373.68 231.79,375.18 207.35,370.75"];
	Extract_Proteins_From_Compartments -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 7 420.14 395.53 443.35 390.32 473.88 383.58 501 378 517.25 374.66 535.22 371.18 550.73 368.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.15 370.67 557.58 366.97 550.25 365.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 515 380.6 0 28 6 -seqids ",
		label=seqids,
		lp="515,382.5",
		pos="e,559.07,366.69 420.14,395.53 443.35,390.32 473.88,383.58 501,378 517.25,374.66 535.22,371.18 550.73,368.25"];
	Align_Short_Proteins -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 4 665.3 305.5 684.34 298.85 710.99 289.53 731.8 282.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 732.52 284.6 738.32 279.98 730.9 279.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 724 290.6 0 22 5 -input ",
		label=input,
		lp="724,292.5",
		pos="e,739.75,279.48 665.3,305.5 684.34,298.85 710.99,289.53 731.8,282.26"];
	Filter_Protein_Compartments -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 4 619.07 170.5 640.55 163.76 670.75 154.28 694.06 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 694.6 149.36 700.55 144.93 693.13 144.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 683 155.6 0 22 5 -input ",
		label=input,
		lp="683,157.5",
		pos="e,701.99,144.48 619.07,170.5 640.55,163.76 670.75,154.28 694.06,146.97"];
	Run_Miniprot_fast	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 309 305.5 309 324.5 367 324.5 367 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 338 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="338,315",
		rects="309,305.5,367,324.5",
		width=0.80556];
	Get_Protein_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 13 199.25 350.98 200.52 350.65 201.77 350.32 203 350 218.03 346.12 223.67 349.95 237 342 241.6 339.26 240.34 335.62 \
245 333 245.32 332.82 275.23 327.37 301.04 322.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.29 325.13 307.74 321.47 300.42 320.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 262 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="262,337.5",
		pos="e,309.23,321.2 199.25,350.98 200.52,350.65 201.77,350.32 203,350 218.03,346.12 223.67,349.95 237,342 241.6,339.26 240.34,335.62 \
245,333 245.32,332.82 275.23,327.37 301.04,322.69"];
	Run_Miniprot_slow	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 228 305.5 228 324.5 286 324.5 286 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 257 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="257,315",
		rects="228,305.5,286,324.5",
		width=0.80556];
	Get_Protein_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 7 177.43 350.61 182.24 344.88 189.29 337.52 197 333 204.07 328.85 212.21 325.67 220.17 323.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 220.47 325.7 226.56 321.47 219.16 320.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 214 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="214,337.5",
		pos="e,228.02,321.06 177.43,350.61 182.24,344.88 189.29,337.52 197,333 204.07,328.85 212.21,325.67 220.17,323.24"];
	Filter_Full_Coverage_Alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 689.9 215.5 671.01 208.85 644.58 199.53 623.94 192.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 624.9 190 617.48 189.98 623.27 194.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 674 200.6 0 22 5 -input ",
		label=input,
		lp="674,202.5",
		pos="e,616.05,189.48 689.9,215.5 671.01,208.85 644.58,199.53 623.94,192.26"];
	Get_Genomic_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 362.33 350.65 357.86 348.35 353.5 345.5 350 342 347.15 339.16 344.91 335.51 343.16 331.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 345.53 331.17 340.68 325.56 340.97 332.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 367 335.6 0 34 6 -genome ",
		label=genome,
		lp="367,337.5",
		pos="e,340.12,324.15 362.33,350.65 357.86,348.35 353.5,345.5 350,342 347.15,339.16 344.91,335.51 343.16,331.86"];
	Get_Genomic_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 335.55 350.53 312.07 346.6 289.17 342.65 288 342 283.32 339.4 283.95 336.61 280 333 278.63 331.75 277.17 330.5 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 305 335.6 0 34 6 -genome ",
		label=genome,
		lp="305,337.5",
		pos="e,269.07,324.2 335.55,350.53 312.07,346.6 289.17,342.65 288,342 283.32,339.4 283.95,336.61 280,333 278.63,331.75 277.17,330.5 275.67,\
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	Get_Genomic_FASTA -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 10 439.46 350.57 454.43 347.7 467.43 344.58 470 342 487.31 324.67 468.47 309.04 481 288 493.61 266.83 516.14 249.53 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 516 290.6 0 70 16 -delta_seqs_input ",
		label=delta_seqs_input,
		lp="516,292.5",
		pos="e,539.89,234.37 439.46,350.57 454.43,347.7 467.43,344.58 470,342 487.31,324.67 468.47,309.04 481,288 493.61,266.83 516.14,249.53 \
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	Run_Miniprot_fast -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 358.55 305.5 374.36 298.97 396.38 289.86 413.84 282.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 414.56 284.99 420.1 280.06 412.69 280.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 406 290.6 0 14 3 -paf ",
		label=paf,
		lp="406,292.5",
		pos="e,421.5,279.48 358.55,305.5 374.36,298.97 396.38,289.86 413.84,282.64"];
	Filter_Short_Sequences -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 7 616.4 350.65 620.98 348.36 625.41 345.51 629 342 631.88 339.19 634.13 335.55 635.87 331.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 638.07 333 638.35 325.59 633.51 331.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 649 335.6 0 28 6 -seqids ",
		label=seqids,
		lp="649,337.5",
		pos="e,638.9,324.18 616.4,350.65 620.98,348.36 625.41,345.51 629,342 631.88,339.19 634.13,335.55 635.87,331.9"];
	Run_Miniprot_slow -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 7 285.84 306.9 307.58 301.59 338.13 294.2 365 288 378.35 284.92 393.03 281.65 405.96 278.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 406.38 281.23 412.69 277.33 405.33 276.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 372 290.6 0 14 3 -paf ",
		label=paf,
		lp="372,292.5",
		pos="e,414.17,277.01 285.84,306.9 307.58,301.59 338.13,294.2 365,288 378.35,284.92 393.03,281.65 405.96,278.81"];
	Remap_cross_origin_alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 562.13 215.71 567.05 210 573.71 202.26 579.49 195.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.19 197.32 583.9 190.41 577.48 194.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 587 200.6 0 22 5 -input ",
		label=input,
		lp="587,202.5",
		pos="e,584.89,189.27 562.13,215.71 567.05,210 573.71,202.26 579.49,195.54"];
	Convert_PAF_Alignments -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 7 443.02 260.7 444.18 254.86 446.68 247.34 452 243 459.04 237.27 476.34 233.42 494.8 230.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 494.62 233.35 501.25 230.03 494 228.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 462.5 245.6 0 21 5 -align ",
		label=align,
		lp="462.5,247.5",
		pos="e,502.76,229.83 443.02,260.7 444.18,254.86 446.68,247.34 452,243 459.04,237.27 476.34,233.42 494.8,230.85"];
	Sort_Protein_Alignments -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 4 729 125.71 729 120.59 729 113.85 729 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 731.45 107.78 729 100.78 726.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 741.5 110.6 0 25 7 -file_in ",
		label=file_in,
		lp="741.5,112.5",
		pos="e,729,99.265 729,125.71 729,120.59 729,113.85 729,107.67"];
	Compute_Gencode_int -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 7 323.85 350.52 372.97 343.2 437.02 333.7 443 333 482.98 328.33 527.65 324.39 564.42 321.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 564.33 323.94 571.12 320.96 563.95 319.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 468.5 335.6 0 51 10 -db_gencode ",
		label=db_gencode,
		lp="468.5,337.5",
		pos="e,572.63,320.84 323.85,350.52 372.97,343.2 437.02,333.7 443,333 482.98,328.33 527.65,324.39 564.42,321.48"];
	Compute_Gencode_int -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 307.97 350.56 313.36 348.34 318.54 345.54 323 342 326.39 339.31 329.16 335.62 331.36 331.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 333.48 333.1 334.4 325.74 329.09 330.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 333 335.6 0 6 1 -T ",
		label=T,
		lp="333,337.5",
		pos="e,335.07,324.38 307.97,350.56 313.36,348.34 318.54,345.54 323,342 326.39,339.31 329.16,335.62 331.36,331.87"];
	Compute_Gencode_int -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 7 242.78 350.6 239.28 348.34 236.15 345.52 234 342 231.41 337.75 232.89 333.53 236.08 329.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 237.48 331.8 241.05 325.3 234.2 328.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 237 335.6 0 6 1 -T ",
		label=T,
		lp="237,337.5",
		pos="e,242.17,324.29 242.78,350.6 239.28,348.34 236.15,345.52 234,342 231.41,337.75 232.89,333.53 236.08,329.76"];
	Sort_Short_Protein_Alignments -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 4 754.36 260.71 747.44 254.76 737.96 246.61 729.93 239.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 731.66 237.96 724.76 235.25 728.47 241.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 770.5 245.6 0 55 12 -sorted_seeds ",
		label=sorted_seeds,
		lp="770.5,247.5",
		pos="e,723.61,234.27 754.36,260.71 747.44,254.76 737.96,246.61 729.93,239.7"];
	Filter_Protein_Alignments -> align	[_draw_="c 7 -#000000 B 4 729 80.71 729 75.59 729 68.85 729 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 731.45 62.78 729 55.78 726.55 62.78 ",
		pos="e,729,54.265 729,80.709 729,75.593 729,68.848 729,62.666"];
}