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	proteins -> Map_Naming_Hits	[_draw_="c 7 -#000000 B 10 106.02 268.74 116.05 259.47 130 243.45 130 226 130 226 130 226 130 134 130 115.71 235.24 103.05 309.16 96.42 ",
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135.26 ",
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		label=asn_cache,
		lp="357,202.5",
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207 543.58 203.02 543.6 201.04 548 198 576.58 178.23 586.93 176.82 621 170 675.51 159.09 1488.62 142.12 1729.34 137.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1729.2 139.76 1736.15 137.17 1729.1 134.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 570 200.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="570,202.5",
		pos="e,1737.7,137.14 338.12,268.55 347.5,265.32 358.65,261.95 369,260 397.44,254.65 472.9,264.5 499,252 523.4,240.31 521.9,227.11 540,\
207 543.58,203.02 543.6,201.04 548,198 576.58,178.23 586.93,176.82 621,170 675.51,159.09 1488.6,142.12 1729.3,137.31"];
	sequence_cache -> Map_Naming_Hits	[_draw_="c 7 -#000000 B 10 310.26 268.77 304.04 259.02 295 242.09 295 226 295 226 295 226 295 134 295 118.65 306.17 108.78 320.42 102.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 321.07 104.81 326.7 99.97 319.29 100.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317 178.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="317,180",
		pos="e,328.11,99.421 310.26,268.77 304.04,259.02 295,242.09 295,226 295,226 295,226 295,134 295,118.65 306.17,108.78 320.42,102.43"];
	blastdb -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 16 469.5 268.55 481.31 265.68 494.72 262.56 507 260 526.89 255.86 534.21 261.81 552 252 575.69 238.94 575.71 227.81 \
593 207 606.18 191.14 602.78 179.67 621 170 670.26 143.85 1034.38 137.81 1190.86 136.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1190.57 138.87 1197.55 136.36 1190.52 133.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 614.5 200.6 0 31 7 -blastdb ",
		label=blastdb,
		lp="614.5,202.5",
		pos="e,1199.1,136.34 469.5,268.55 481.31,265.68 494.72,262.56 507,260 526.89,255.86 534.21,261.81 552,252 575.69,238.94 575.71,227.81 \
593,207 606.18,191.14 602.78,179.67 621,170 670.26,143.85 1034.4,137.81 1190.9,136.42"];
	Separate_Plasmid_ORFs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1149 170.5 1149 189.5 1277 189.5 1277 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1213 177.5 0 112 21 -separate_plasmid_orfs ",
		height=0.27778,
		label=separate_plasmid_orfs,
		pos="1213,180",
		rects="1149,170.5,1277,189.5",
		width=1.7778];
	plasmids -> Separate_Plasmid_ORFs	[_draw_="c 7 -#000000 B 4 986.57 268.65 1031.1 251.41 1133.19 211.89 1183.66 192.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1184.24 194.76 1189.89 189.95 1182.47 190.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1139.5 223.1 0 37 8 -plasmids ",
		label=plasmids,
		lp="1139.5,225",
		pos="e,1191.3,189.4 986.57,268.65 1031.1,251.41 1133.2,211.89 1183.7,192.36"];
	Remove_off_frame_ORFs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1524.5 215.5 1524.5 234.5 1607.5 234.5 1607.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1566 222.5 0 67 13 -set_operation ",
		height=0.27778,
		label=set_operation,
		pos="1566,225",
		rects="1524.5,215.5,1607.5,234.5",
		width=1.1528];
	prot_ids_B2 -> Remove_off_frame_ORFs	[_draw_="c 7 -#000000 B 10 1829.49 268.54 1812.7 265.35 1792.98 262.01 1775 260 1736.09 255.65 1635.69 265.66 1599 252 1592.08 249.42 1585.47 \
244.82 1580.01 240.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1581.7 238.42 1574.89 235.49 1578.39 242.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1602 245.6 0 6 1 -B ",
		label=B,
		lp="1602,247.5",
		pos="e,1573.8,234.47 1829.5,268.54 1812.7,265.35 1793,262.01 1775,260 1736.1,255.65 1635.7,265.66 1599,252 1592.1,249.42 1585.5,244.82 \
1580,240.19"];
	prot_ids_A -> Remove_off_frame_ORFs	[_draw_="c 7 -#000000 B 7 1654.25 268.55 1621.8 261.76 1581.55 253.17 1580 252 1576.55 249.4 1573.85 245.69 1571.79 241.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1574.1 241.05 1569.01 235.65 1569.62 243.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1583 245.6 0 6 1 -A ",
		label=A,
		lp="1583,247.5",
		pos="e,1568.4,234.27 1654.3,268.55 1621.8,261.76 1581.6,253.17 1580,252 1576.5,249.4 1573.9,245.69 1571.8,241.89"];
	annotation -> Separate_Plasmid_ORFs	[_draw_="c 7 -#000000 B 7 579.23 268.55 588.4 265.47 599.1 262.22 609 260 798.53 217.57 1026.98 195.36 1140.96 186.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1141.01 188.65 1147.79 185.65 1140.62 183.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 887 223.1 0 44 11 -orf_entries ",
		label=orf_entries,
		lp="887,225",
		pos="e,1149.3,185.53 579.23,268.55 588.4,265.47 599.1,262.22 609,260 798.53,217.57 1027,195.36 1141,186.2"];
	annotation -> Map_Naming_Hits	[_draw_="c 7 -#000000 B 7 575.01 268.66 603.05 255.14 650.18 227.03 631 198 591.22 137.79 509.9 111.35 450.57 99.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 451.17 97.43 443.84 98.56 450.27 102.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 647 178.1 0 46 9 -sequences ",
		label=sequences,
		lp="647,180",
		pos="e,442.35,98.278 575.01,268.66 603.05,255.14 650.18,227.03 631,198 591.22,137.79 509.9,111.35 450.57,99.81"];
	raw_seqs -> Separate_Plasmid_ORFs	[_draw_="c 7 -#000000 B 4 1201.11 268.82 1203.24 253.09 1207.94 218.4 1210.75 197.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1213.14 198.2 1211.65 190.94 1208.29 197.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1227.5 223.1 0 39 8 -raw_seqs ",
		label=raw_seqs,
		lp="1227.5,225",
		pos="e,1211.9,189.44 1201.1,268.82 1203.2,253.09 1207.9,218.4 1210.7,197.63"];
	blast_rules_db -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 7 743.56 268.53 768.5 255.29 819.26 229.69 865 215 976.43 179.22 1110.88 156.56 1191.25 145.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1191.25 147.57 1197.84 144.16 1190.57 142.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 936.5 200.6 0 31 7 -blastdb ",
		label=blastdb,
		lp="936.5,202.5",
		pos="e,1199.3,143.95 743.56,268.53 768.5,255.29 819.26,229.69 865,215 976.43,179.22 1110.9,156.56 1191.3,145.09"];
	lds2 -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 16 2217.65 268.51 2204.37 265.19 2188.53 261.76 2174 260 2159.66 258.26 1666.45 259.33 1654 252 1630.16 237.95 1639.94 \
219.88 1623 198 1605.49 175.38 1603.18 164.51 1577 153 1555.35 143.48 1419.48 139.07 1333.4 137.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1333.54 134.76 1326.49 137.06 1333.44 139.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1637 200.6 0 18 4 -lds2 ",
		label=lds2,
		lp="1637,202.5",
		pos="e,1325,137.03 2217.7,268.51 2204.4,265.19 2188.5,261.76 2174,260 2159.7,258.26 1666.4,259.33 1654,252 1630.2,237.95 1639.9,219.88 \
1623,198 1605.5,175.38 1603.2,164.51 1577,153 1555.3,143.48 1419.5,139.07 1333.4,137.2"];
	lds2 -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 16 2217.28 268.55 2204.06 265.28 2188.38 261.88 2174 260 2148.31 256.64 1963.46 264.91 1941 252 1916.41 237.87 1927.01 \
218.1 1907 198 1880.11 170.98 1867.89 170.45 1834 153 1830.66 151.28 1827.1 149.55 1823.56 147.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1824.68 145.72 1817.29 145.05 1822.65 150.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1923 200.6 0 18 4 -lds2 ",
		label=lds2,
		lp="1923,202.5",
		pos="e,1815.9,144.42 2217.3,268.55 2204.1,265.28 2188.4,261.88 2174,260 2148.3,256.64 1963.5,264.91 1941,252 1916.4,237.87 1927,218.1 \
1907,198 1880.1,170.98 1867.9,170.45 1834,153 1830.7,151.28 1827.1,149.55 1823.6,147.9"];
	taxid -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 16 2143.92 268.6 2139.71 265.25 2134.44 261.78 2129 260 2102.49 251.33 1650.36 267.24 1627 252 1611.84 242.11 1618.71 \
230.87 1610 215 1609.51 214.1 1570.89 153.51 1570 153 1550.09 141.43 1417.86 137.73 1333.26 136.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1333.52 134.11 1326.48 136.46 1333.45 139 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1614.5 200.6 0 21 5 -taxid ",
		label=taxid,
		lp="1614.5,202.5",
		pos="e,1325,136.44 2143.9,268.6 2139.7,265.25 2134.4,261.78 2129,260 2102.5,251.33 1650.4,267.24 1627,252 1611.8,242.11 1618.7,230.87 \
1610,215 1609.5,214.1 1570.9,153.51 1570,153 1550.1,141.43 1417.9,137.73 1333.3,136.55"];
	taxid -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 13 2143.9 268.66 2139.69 265.32 2134.42 261.84 2129 260 2106.36 252.33 1934.79 263.8 1914 252 1889.13 237.88 1898.54 \
218.88 1879 198 1860.51 178.23 1835.07 160.28 1817.25 148.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1818.63 146.81 1811.4 145.16 1816.02 150.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1895.5 200.6 0 21 5 -taxid ",
		label=taxid,
		lp="1895.5,202.5",
		pos="e,1810.1,144.35 2143.9,268.66 2139.7,265.32 2134.4,261.84 2129,260 2106.4,252.33 1934.8,263.8 1914,252 1889.1,237.88 1898.5,218.88 \
1879,198 1860.5,178.23 1835.1,160.28 1817.2,148.84"];
	genus_list -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 16 2507.97 268.62 2501.42 265.36 2493.53 261.95 2486 260 2410.16 240.39 1854.19 239.68 1783 207 1777.86 204.64 1778.87 \
200.87 1774 198 1711.45 161.16 1688.62 164.81 1617 153 1564.36 144.32 1420.86 139.61 1333.26 137.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1333.54 135.02 1326.48 137.3 1333.42 139.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1804 200.6 0 42 10 -genus_list ",
		label=genus_list,
		lp="1804,202.5",
		pos="e,1325,137.27 2508,268.62 2501.4,265.36 2493.5,261.95 2486,260 2410.2,240.39 1854.2,239.68 1783,207 1777.9,204.64 1778.9,200.87 \
1774,198 1711.5,161.16 1688.6,164.81 1617,153 1564.4,144.32 1420.9,139.61 1333.3,137.47"];
	genus_list -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 7 2507.13 268.67 2500.71 265.58 2493.14 262.28 2486 260 2263.81 189.2 1987.71 154.92 1862.85 142.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1863.2 139.73 1855.99 141.46 1862.71 144.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2299 200.6 0 42 10 -genus_list ",
		label=genus_list,
		lp="2299,202.5",
		pos="e,1854.5,141.31 2507.1,268.67 2500.7,265.58 2493.1,262.28 2486,260 2263.8,189.2 1987.7,154.92 1862.8,142.15"];
	scatter_gather_nchunks -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 7 1373.83 268.57 1354.87 256.73 1321.09 233.63 1299 207 1297.05 204.65 1280.33 172.05 1270.05 151.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.26 150.8 1266.9 145.67 1267.89 153.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1348 200.6 0 98 22 -scatter_gather_nchunks ",
		label=scatter_gather_nchunks,
		lp="1348,202.5",
		pos="e,1266.2,144.32 1373.8,268.57 1354.9,256.73 1321.1,233.63 1299,207 1297.1,204.65 1280.3,172.05 1270,151.85"];
	scatter_gather_nchunks -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 7 1387.15 268.62 1386.01 252.4 1386.07 216.65 1406 198 1417.72 187.03 1621.21 158.9 1729.47 144.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1729.61 147.07 1736.23 143.72 1728.97 142.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1455 200.6 0 98 22 -scatter_gather_nchunks ",
		label=scatter_gather_nchunks,
		lp="1455,202.5",
		pos="e,1737.7,143.53 1387.1,268.62 1386,252.4 1386.1,216.65 1406,198 1417.7,187.03 1621.2,158.9 1729.5,144.61"];
	identification_db_dir -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 16 2012.07 268.56 1996.79 265.24 1978.61 261.81 1962 260 1916.37 255.04 1592.86 265.53 1549 252 1535.81 247.93 1532.55 \
244.97 1523 235 1516.38 228.09 1508.65 203.74 1501 198 1452.38 161.49 1384.26 146.4 1333.17 140.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1333.54 137.79 1326.31 139.43 1332.99 142.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1530 200.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="1530,202.5",
		pos="e,1324.8,139.26 2012.1,268.56 1996.8,265.24 1978.6,261.81 1962,260 1916.4,255.04 1592.9,265.53 1549,252 1535.8,247.93 1532.6,244.97 \
1523,235 1516.4,228.09 1508.6,203.74 1501,198 1452.4,161.49 1384.3,146.4 1333.2,140.21"];
	identification_db_dir -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 10 2008.63 268.52 1994.08 265.52 1977.33 262.31 1962 260 1927.54 254.8 1915.63 266.62 1884 252 1840.93 232.1 1813.71 \
179.03 1802.25 152.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1804.58 151.33 1799.66 145.78 1800.04 153.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1855 200.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="1855,202.5",
		pos="e,1799.1,144.38 2008.6,268.52 1994.1,265.52 1977.3,262.31 1962,260 1927.5,254.8 1915.6,266.62 1884,252 1840.9,232.1 1813.7,179.03 \
1802.3,152.12"];
	prot_ids_B1 -> Remove_off_frame_ORFs	[_draw_="c 7 -#000000 B 4 1540.12 268.58 1544.59 261.23 1551.19 250.37 1556.6 241.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1558.65 242.81 1560.19 235.56 1554.46 240.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1558 245.6 0 6 1 -B ",
		label=B,
		lp="1558,247.5",
		pos="e,1561,234.26 1540.1,268.58 1544.6,261.23 1551.2,250.37 1556.6,241.46"];
	Separate_Plasmid_ORFs -> Find_Naming_Protein_Hits_for_struct	[_draw_="c 7 -#000000 B 4 1222.45 170.71 1229.23 164.76 1238.52 156.61 1246.39 149.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1247.8 151.72 1251.44 145.26 1244.57 148.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1247.5 155.6 0 13 3 -ids ",
		label=ids,
		lp="1247.5,157.5",
		pos="e,1252.6,144.27 1222.4,170.71 1229.2,164.76 1238.5,156.61 1246.4,149.7"];
	Separate_Plasmid_ORFs -> Find_Struct_Protein_Hits_for_Plasmids	[_draw_="c 7 -#000000 B 4 1276.78 174.3 1388.04 166.09 1616.52 149.24 1729.59 140.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1729.55 143.36 1736.35 140.4 1729.19 138.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1562.5 155.6 0 13 3 -ids ",
		label=ids,
		lp="1562.5,157.5",
		pos="e,1737.9,140.29 1276.8,174.3 1388,166.09 1616.5,149.24 1729.6,140.9"];
	Find_Naming_Protein_Hits_for_struct -> Map_Naming_Hits	[_draw_="c 7 -#000000 B 4 1199.28 130.94 1039.63 123.16 618.68 102.64 450.69 94.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 451.03 92.01 443.92 94.12 450.79 96.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 919 110.6 0 40 8 -hmm_hits ",
		label=hmm_hits,
		lp="919,112.5",
		pos="e,442.4,94.042 1199.3,130.94 1039.6,123.16 618.68,102.64 450.69,94.446"];
	Find_Struct_Protein_Hits_for_Plasmids -> Map_Naming_Hits	[_draw_="c 7 -#000000 B 7 1737.62 132.23 1599.16 128.02 1240.01 117.11 940 108 763.93 102.65 556.73 96.36 450.55 93.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 450.73 90.7 443.66 92.93 450.59 95.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1242 110.6 0 40 8 -hmm_hits ",
		label=hmm_hits,
		lp="1242,112.5",
		pos="e,442.15,92.886 1737.6,132.23 1599.2,128.02 1240,117.11 940,108 763.93,102.65 556.73,96.364 450.55,93.141"];
	Map_Naming_Hits -> aligns	[_draw_="c 7 -#000000 B 4 380 80.71 380 75.59 380 68.85 380 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 382.45 62.78 380 55.78 377.55 62.78 ",
		pos="e,380,54.265 380,80.709 380,75.593 380,68.848 380,62.666"];
	Remove_off_frame_ORFs -> Separate_Plasmid_ORFs	[_draw_="c 7 -#000000 B 7 1565.13 215.52 1564.03 209.59 1561.56 202.03 1556 198 1534.67 182.56 1379.43 180.33 1285.26 180.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1285.41 177.99 1278.42 180.45 1285.42 182.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1576 200.6 0 28 7 -orf_ids ",
		label=orf_ids,
		lp="1576,202.5",
		pos="e,1276.9,180.45 1565.1,215.52 1564,209.59 1561.6,202.03 1556,198 1534.7,182.56 1379.4,180.33 1285.3,180.44"];
}