digraph workflow {
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		taxon_db	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 729.5 448.5 729.5 467.5 790.5 467.5 790.5 448.5 ",
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		blastdb_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 498.5 448.5 498.5 467.5 569.5 467.5 569.5 448.5 ",
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			rects="330,448.5,398,467.5",
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		taxid	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 684.5 448.5 684.5 467.5 725.5 467.5 725.5 448.5 ",
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	}
	subgraph cluster_outputs {
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			bb="38,8,146,63",
			label="Workflow Outputs",
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			lheight=0.15,
			lp="92,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		align	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 71.5 35.5 71.5 54.5 112.5 54.5 112.5 35.5 ",
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	}
	Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 161 215.5 161 234.5 331 234.5 331 215.5 ",
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		height=0.27778,
		label="Filter Full-Coverage Alignments",
		pos="246,225",
		rects="161,215.5,331,234.5",
		width=2.3611];
	uniColl_asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 31 634.23 448.73 637.94 444.09 642.25 438.03 645 432 651.86 416.95 650.91 411.43 649 395 648.11 387.29 650.06 383.88 \
645 378 638.75 370.74 632.5 375.95 625 370 616.5 363.26 620.46 355.32 611 350 586.73 336.36 511.01 354.21 486 342 481.19 339.65 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.31 233.91 293.94 234.76 300.23 238.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 524 335.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="524,337.5",
		pos="e,292.47,234.43 634.23,448.73 637.94,444.09 642.25,438.03 645,432 651.86,416.95 650.91,411.43 649,395 648.11,387.29 650.06,383.88 \
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481.58,336.98 478,333 459.9,312.89 459.2,303.47 437,288 393.32,257.57 376.9,258.59 326,243 317.87,240.51 309.17,238.26 300.61,236.26"];
	Align_Short_Proteins	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 266.5 305.5 266.5 324.5 403.5 324.5 403.5 305.5 ",
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		fillcolor="#F3CEA1",
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		label="Seed Protein Alignments",
		pos="335,315",
		rects="266.5,305.5,403.5,324.5",
		width=1.9028];
	uniColl_asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 16 630.7 448.57 635.84 435.38 643.14 409.85 630 395 620.36 384.1 576.65 395.72 565 387 550.66 376.26 563.67 360.29 \
549 350 536.97 341.56 431.45 344.69 417 342 399.12 338.68 379.7 332.63 364.24 327.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 365.39 325.02 357.98 324.96 363.74 329.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 603 380.6 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="603,382.5",
		pos="e,356.55,324.44 630.7,448.57 635.84,435.38 643.14,409.85 630,395 620.36,384.1 576.65,395.72 565,387 550.66,376.26 563.67,360.29 \
549,350 536.97,341.56 431.45,344.69 417,342 399.12,338.68 379.7,332.63 364.24,327.21"];
	Filter_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 23.5 80.5 23.5 99.5 160.5 99.5 160.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 92 87.5 0 121 25 -Filter Protein Alignments ",
		height=0.27778,
		label="Filter Protein Alignments",
		pos="92,90",
		rects="23.5,80.5,160.5,99.5",
		width=1.9028];
	uniColl_asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 19 651.86 448.53 662.02 445.37 673.96 442.07 685 440 767.85 424.49 796.27 449.9 873 415 885.95 409.11 885.87 402.44 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.91 88.32 161.91 90.78 168.91 93.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1011 268.1 0 76 17 -uniColl_asn_cache ",
		label=uniColl_asn_cache,
		lp="1011,270",
		pos="e,160.4,90.779 651.86,448.53 662.02,445.37 673.96,442.07 685,440 767.85,424.49 796.27,449.9 873,415 885.95,409.11 885.87,402.44 \
898,395 929.2,375.86 973,397.6 973,361 973,361 973,361 973,134 973,93.907 383.26,90.636 168.79,90.771"];
	Remap_cross_origin_alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 694.5 215.5 694.5 234.5 799.5 234.5 799.5 215.5 ",
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		height=0.27778,
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		width=1.4583];
	uniColl_asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 16 654.01 448.55 663.73 445.65 674.81 442.51 685 440 787.93 414.67 841.96 448.68 913 370 922.68 359.28 921 352.94 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 807.9 227.17 800.71 228.99 807.47 232.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 943 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="943,337.5",
		pos="e,799.21,228.86 654.01,448.55 663.73,445.65 674.81,442.51 685,440 787.93,414.67 841.96,448.68 913,370 922.68,359.28 921,352.94 921,\
338.5 921,338.5 921,338.5 921,269 921,244.98 857.7,234.29 807.46,229.59"];
	Convert_PAF_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 719 260.5 719 279.5 775 279.5 775 260.5 ",
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		label=paf2asn,
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		rects="719,260.5,775,279.5",
		width=0.77778];
	uniColl_asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 7 654.92 448.62 714.49 430.48 849.63 387.76 862 370 888.72 331.61 823.06 298.85 780.3 282.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 781.19 280.09 773.77 279.93 779.47 284.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 890 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="890,360",
		pos="e,772.35,279.4 654.92,448.62 714.49,430.48 849.63,387.76 862,370 888.72,331.61 823.06,298.85 780.3,282.38"];
	Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 243 260.5 243 279.5 329 279.5 329 260.5 ",
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		height=0.27778,
		label=align_sort_ma,
		pos="286,270",
		rects="243,260.5,329,279.5",
		width=1.1944];
	uniColl_asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 22 632.66 448.61 635.46 443.94 638.56 437.89 640 432 643.84 416.29 654.38 395.62 638 378 627.64 366.86 582.93 378.03 \
570 370 560.99 364.41 566.16 355.34 557 350 532.19 335.53 452.51 356.97 428 342 411.67 332.03 421.17 316.66 406 305 386.27 289.84 \
360.08 281.44 337.21 276.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.76 274.4 330.43 275.51 336.86 279.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 592 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="592,360",
		pos="e,328.94,275.23 632.66,448.61 635.46,443.94 638.56,437.89 640,432 643.84,416.29 654.38,395.62 638,378 627.64,366.86 582.93,378.03 \
570,370 560.99,364.41 566.16,355.34 557,350 532.19,335.53 452.51,356.97 428,342 411.67,332.03 421.17,316.66 406,305 386.27,289.84 \
360.08,281.44 337.21,276.79"];
	Filter_Short_Sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 229 350.5 229 369.5 291 369.5 291 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 260 357.5 0 46 10 -seq_filter ",
		height=0.27778,
		label=seq_filter,
		pos="260,360",
		rects="229,350.5,291,369.5",
		width=0.86111];
	uniColl_asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 13 602.28 448.55 592.35 445.44 580.73 442.16 570 440 500.76 426.07 482.4 428.66 412 423 403.68 422.33 267.85 420.95 \
262 415 252.47 405.31 253.08 389.3 255.41 377.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.72 378.12 256.94 370.74 252.95 376.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 284 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="284,405",
		pos="e,257.29,369.27 602.28,448.55 592.35,445.44 580.73,442.16 570,440 500.76,426.07 482.4,428.66 412,423 403.68,422.33 267.85,420.95 \
262,415 252.47,405.31 253.08,389.3 255.41,377.22"];
	Get_Protein_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 491.5 350.5 491.5 369.5 548.5 369.5 548.5 350.5 ",
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		label=getfasta,
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		rects="491.5,350.5,548.5,369.5",
		width=0.79167];
	uniColl_asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 13 618.52 448.81 610.38 440.69 598.02 427.65 589 415 583.11 406.74 585.83 401.45 578 395 568.99 387.58 563.3 392.47 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 536.97 373.13 530.06 370.45 533.8 376.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 611 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="611,405",
		pos="e,528.91,369.47 618.52,448.81 610.38,440.69 598.02,427.65 589,415 583.11,406.74 585.83,401.45 578,395 568.99,387.58 563.3,392.47 \
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	Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 308 395.5 308 414.5 416 414.5 416 395.5 ",
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		height=0.27778,
		label=compart_annot2all,
		pos="362,405",
		rects="308,395.5,416,414.5",
		width=1.5];
	compartments -> Extract_Proteins_From_Compartments	[_draw_="c 7 -#000000 B 4 295.21 448.58 307.83 440.53 327.04 428.29 341.63 418.99 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 345.5 425.6 0 25 6 -aligns ",
		label=aligns,
		lp="345.5,427.5",
		pos="e,348.77,414.43 295.21,448.58 307.83,440.53 327.04,428.29 341.63,418.99"];
	Filter_Protein_Compartments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 102 170.5 102 189.5 170 189.5 170 170.5 ",
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		height=0.27778,
		label=align_filter,
		pos="136,180",
		rects="102,170.5,170,189.5",
		width=0.94444];
	compartments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 16 238.14 455.57 193.45 453.28 122.47 447.35 63 432 33.67 424.43 0 436.29 0 406 0 406 0 406 0 336.5 0 301 0.42 287.39 \
23 260 47.56 230.21 86.04 206.59 111.14 193.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 112.05 195.49 117.13 190.08 109.79 191.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 32 313.1 0 60 12 -compartments ",
		label=compartments,
		lp="32,315",
		pos="e,118.47,189.38 238.14,455.57 193.45,453.28 122.47,447.35 63,432 33.67,424.43 0,436.29 0,406 0,406 0,406 0,336.5 0,301 0.41596,287.39 \
23,260 47.562,230.21 86.038,206.59 111.14,193.2"];
	Compute_Gencode	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 898 395.5 898 414.5 1004 414.5 1004 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 951 402.5 0 90 15 -compute_gencode ",
		height=0.27778,
		label=compute_gencode,
		pos="951,405",
		rects="898,395.5,1004,414.5",
		width=1.4722];
	taxon_db -> Compute_Gencode	[_draw_="c 7 -#000000 B 10 774.15 448.55 780.34 445.28 787.81 441.88 795 440 824.29 432.35 904.24 446.17 931 432 935.64 429.54 939.54 425.48 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 944.52 422.87 946.21 415.65 940.38 420.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 960 425.6 0 38 8 -taxon_db ",
		label=taxon_db,
		lp="960,427.5",
		pos="e,947.03,414.37 774.15,448.55 780.34,445.28 787.81,441.88 795,440 824.29,432.35 904.24,446.17 931,432 935.64,429.54 939.54,425.48 \
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	all_prots -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 16 418.64 448.63 404.46 440.28 381.09 427.99 359 423 317.99 413.74 208.13 432.7 170 415 152.74 406.99 141 402.53 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 175 313.1 0 68 17 -subject_allowlist ",
		label=subject_allowlist,
		lp="175,315",
		pos="e,137.53,189.21 418.64,448.63 404.46,440.28 381.09,427.99 359,423 317.99,413.74 208.13,432.7 170,415 152.74,406.99 141,402.53 141,\
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	all_prots -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 10 427.3 448.54 422.24 440.36 413.36 428.44 402 423 384.45 414.59 240.45 429.07 227 415 215.52 402.98 229.13 386.32 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.5 376.78 247.27 370.4 240.34 373.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 241 403.1 0 28 6 -seqids ",
		label=seqids,
		lp="241,405",
		pos="e,248.43,369.43 427.3,448.54 422.24,440.36 413.36,428.44 402,423 384.45,414.59 240.45,429.07 227,415 215.52,402.98 229.13,386.32 \
242.18,374.69"];
	all_prots -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 7 447.44 448.63 464.55 439.11 490.69 423.76 498 415 503 409.01 509.94 390.68 514.69 377.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 516.9 378.13 516.83 370.72 512.26 376.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 517 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="517,405",
		pos="e,517.32,369.28 447.44,448.63 464.55,439.11 490.69,423.76 498,415 503,409.01 509.94,390.68 514.69,377.03"];
	Get_Genomic_FASTA	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 756.5 350.5 756.5 369.5 861.5 369.5 861.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 809 357.5 0 89 18 -cross_origin_fasta ",
		height=0.27778,
		label=cross_origin_fasta,
		pos="809,360",
		rects="756.5,350.5,861.5,369.5",
		width=1.4583];
	genomic_ids -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 7 872.63 455.72 933.67 452.32 1041.8 439.97 1004 395 1001.79 392.37 926.05 379.73 869.63 370.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 870.26 368.25 862.96 369.55 869.48 373.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1021 403.1 0 20 6 -gilist ",
		label=gilist,
		lp="1021,405",
		pos="e,861.46,369.31 872.63,455.72 933.67,452.32 1041.8,439.97 1004,395 1001.8,392.37 926.05,379.73 869.63,370.63"];
	blastdb_dir -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 13 515.27 448.59 493.12 438.58 457.66 422.29 445 415 431.43 407.19 430.61 400.63 416 395 390.9 385.32 376.44 404.49 \
356 387 340.18 373.46 335.97 348.62 335.02 332.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.48 332.52 334.81 325.6 332.58 332.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379 380.6 0 46 11 -blastdb_dir ",
		label=blastdb_dir,
		lp="379,382.5",
		pos="e,334.77,324.08 515.27,448.59 493.12,438.58 457.66,422.29 445,415 431.43,407.19 430.61,400.63 416,395 390.9,385.32 376.44,404.49 \
356,387 340.18,373.46 335.97,348.62 335.02,332.21"];
	asn_cache -> Get_Genomic_FASTA	[_draw_="c 7 -#000000 B 16 380.71 448.56 387.23 445.53 394.84 442.29 402 440 455.54 422.86 483.61 451.92 526 415 533.1 408.81 527.67 402.76 \
533 395 539.6 385.38 542.13 382.24 553 378 572.14 370.53 707.72 371.92 749.47 370.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 749.43 372.49 756.25 369.58 749.11 367.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 555 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="555,405",
		pos="e,757.76,369.49 380.71,448.56 387.23,445.53 394.84,442.29 402,440 455.54,422.86 483.61,451.92 526,415 533.1,408.81 527.67,402.76 \
533,395 539.6,385.38 542.13,382.24 553,378 572.14,370.53 707.72,371.92 749.47,370.03"];
	asn_cache -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 19 348.56 448.53 341.83 445.26 333.73 441.86 326 440 308.91 435.9 182.83 441.44 168 432 160.79 427.41 161.4 423.21 \
159 415 148.75 379.93 129.06 360.61 153 333 169.47 314.01 189.41 340.76 209 325 222.17 314.4 235.55 267.77 242.02 242.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 244.32 243.35 243.64 235.97 239.57 242.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 175 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="175,337.5",
		pos="e,244,234.5 348.56,448.53 341.83,445.26 333.73,441.86 326,440 308.91,435.9 182.83,441.44 168,432 160.79,427.41 161.4,423.21 159,\
415 148.75,379.93 129.06,360.61 153,333 169.47,314.01 189.41,340.76 209,325 222.17,314.4 235.55,267.77 242.02,242.46"];
	asn_cache -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 22 347.71 448.58 341.12 445.48 333.34 442.19 326 440 258.71 419.94 220.93 463.34 170 415 160.77 406.24 165.34 399.66 \
164 387 163.58 383.02 161.44 381.07 164 378 176.74 362.74 190.51 379.45 208 370 218.79 364.17 216.6 356.49 227 350 243.92 339.44 \
264.4 331.91 282.95 326.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.46 329.06 289.59 324.88 282.19 324.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 186 380.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="186,382.5",
		pos="e,291.05,324.48 347.71,448.58 341.12,445.48 333.34,442.19 326,440 258.71,419.94 220.93,463.34 170,415 160.77,406.24 165.34,399.66 \
164,387 163.58,383.02 161.44,381.07 164,378 176.74,362.74 190.51,379.45 208,370 218.79,364.17 216.6,356.49 227,350 243.92,339.44 \
264.4,331.91 282.95,326.66"];
	asn_cache -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 28 348.94 448.64 342.15 445.3 333.89 441.82 326 440 299.79 433.95 107.45 445.19 84 432 71.97 425.23 67 419.81 67 \
406 67 406 67 406 67 336.5 67 322.16 67.46 317.25 60 305 50.97 290.18 38.1 295.35 30 280 23.44 267.56 27 262.56 27 248.5 27 248.5 \
27 248.5 27 134 27 119.27 38.75 109.3 52.26 102.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 53.06 105.01 58.49 99.97 51.1 100.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 52 268.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="52,270",
		pos="e,59.881,99.361 348.94,448.64 342.15,445.3 333.89,441.82 326,440 299.79,433.95 107.45,445.19 84,432 71.967,425.23 67,419.81 67,406 \
67,406 67,406 67,336.5 67,322.16 67.464,317.25 60,305 50.967,290.18 38.099,295.35 30,280 23.437,267.56 27,262.56 27,248.5 27,248.5 \
27,248.5 27,134 27,119.27 38.75,109.3 52.259,102.69"];
	asn_cache -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 13 370.53 448.77 376.88 441.23 387.13 430.17 398 423 405.99 417.73 411.7 422.21 418 415 455.67 371.84 400.41 329.41 \
440 288 473.17 253.3 606.63 236.97 686.25 230.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 686.45 232.62 693.23 229.6 686.05 227.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 448 335.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="448,337.5",
		pos="e,694.73,229.48 370.53,448.77 376.88,441.23 387.13,430.17 398,423 405.99,417.73 411.7,422.21 418,415 455.67,371.84 400.41,329.41 \
440,288 473.17,253.3 606.63,236.97 686.25,230.18"];
	asn_cache -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 19 374.9 448.68 384.94 441.29 400.43 430.51 415 423 423.88 418.42 429.72 422.77 436 415 454.37 392.27 424.25 369.53 \
446 350 460.65 336.85 605.1 350.19 623 342 643.58 332.58 639.18 317.58 658 305 674.19 294.18 694.31 286.12 711.33 280.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 712.01 282.93 717.95 278.5 710.54 278.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 468 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="468,360",
		pos="e,719.4,278.05 374.9,448.68 384.94,441.29 400.43,430.51 415,423 423.88,418.42 429.72,422.77 436,415 454.37,392.27 424.25,369.53 \
446,350 460.65,336.85 605.1,350.19 623,342 643.58,332.58 639.18,317.58 658,305 674.19,294.18 694.31,286.12 711.33,280.57"];
	asn_cache -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 19 348.56 448.52 341.84 445.25 333.73 441.85 326 440 274.25 427.63 89 459.21 89 406 89 406 89 406 89 336.5 89 322.44 \
82.87 315.7 92 305 101.24 294.18 113.67 307.75 123 297 135.59 282.5 136.66 225.91 136.37 197.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 138.83 197.81 136.27 190.85 133.93 197.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 114 313.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="114,315",
		pos="e,136.24,189.33 348.56,448.52 341.84,445.25 333.73,441.85 326,440 274.25,427.63 89,459.21 89,406 89,406 89,406 89,336.5 89,322.44 \
82.869,315.7 92,305 101.24,294.18 113.67,307.75 123,297 135.59,282.5 136.66,225.91 136.37,197.48"];
	asn_cache -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 19 348.56 448.55 341.83 445.27 333.73 441.87 326 440 294.42 432.35 209.46 445.7 180 432 170.59 427.63 168.17 424.5 \
164 415 158.2 401.77 153.79 361.13 163 350 173.17 337.7 183.57 348.82 198 342 228.09 327.79 256.91 301.27 272.95 284.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 274.49 286.9 277.59 280.16 270.97 283.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 185 358.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="185,360",
		pos="e,278.64,279.08 348.56,448.55 341.83,445.27 333.73,441.87 326,440 294.42,432.35 209.46,445.7 180,432 170.59,427.63 168.17,424.5 \
164,415 158.2,401.77 153.79,361.13 163,350 173.17,337.7 183.57,348.82 198,342 228.09,327.79 256.91,301.27 272.95,284.97"];
	Sort_Protein_Alignments	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 59.5 125.5 59.5 144.5 124.5 144.5 124.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 92 132.5 0 49 10 -align_sort ",
		height=0.27778,
		label=align_sort,
		pos="92,135",
		rects="59.5,125.5,124.5,144.5",
		width=0.90278];
	asn_cache -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 16 348.94 448.65 342.14 445.31 333.89 441.83 326 440 301.41 434.3 121.58 443.28 99 432 85.71 425.36 78 420.85 78 \
406 78 406 78 406 78 179 78 169.78 80.95 159.96 84.14 152.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 86.36 153.08 86.96 145.69 81.88 151.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 100 290.6 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="100,292.5",
		pos="e,87.57,144.31 348.94,448.65 342.14,445.31 333.89,441.83 326,440 301.41,434.3 121.58,443.28 99,432 85.712,425.36 78,420.85 78,406 \
78,406 78,406 78,179 78,169.78 80.949,159.96 84.141,152.04"];
	asn_cache -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 19 347.71 448.6 341.11 445.5 333.34 442.21 326 440 317.86 437.55 180.5 421.49 175 415 169.25 408.22 169.48 401.97 \
175 395 184.64 382.83 194.71 393.06 209 387 215.81 384.11 216.51 381.55 223 378 226.07 376.32 229.33 374.65 232.61 373.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 233.51 375.34 238.79 370.14 231.41 370.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 197 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="197,405",
		pos="e,240.16,369.49 347.71,448.6 341.11,445.5 333.34,442.21 326,440 317.86,437.55 180.5,421.49 175,415 169.25,408.22 169.48,401.97 175,\
395 184.64,382.83 194.71,393.06 209,387 215.81,384.11 216.51,381.55 223,378 226.07,376.32 229.33,374.65 232.61,373.06"];
	asn_cache -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 10 382.05 448.63 404.77 437.96 441.4 420.27 446 415 452.19 407.9 446.8 402.09 453 395 461.45 385.35 473.29 378.1 \
484.67 372.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 485.58 375.1 491.04 370.08 483.64 370.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 475 403.1 0 44 9 -asn_cache ",
		label=asn_cache,
		lp="475,405",
		pos="e,492.43,369.48 382.05,448.63 404.77,437.96 441.4,420.27 446,415 452.19,407.9 446.8,402.09 453,395 461.45,385.35 473.29,378.1 484.67,\
372.82"];
	taxid -> Compute_Gencode	[_draw_="c 7 -#000000 B 13 714.54 448.68 718.94 445.35 724.42 441.86 730 440 800.05 416.58 826.05 455.71 896 432 902.66 429.74 902.82 426.34 \
909 423 912.45 421.14 916.15 419.35 919.88 417.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 920.6 420.05 926.08 415.05 918.68 415.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 919.5 425.6 0 21 5 -taxid ",
		label=taxid,
		lp="919.5,427.5",
		pos="e,927.47,414.46 714.54,448.68 718.94,445.35 724.42,441.86 730,440 800.05,416.58 826.05,455.71 896,432 902.66,429.74 902.82,426.34 \
909,423 912.45,421.14 916.15,419.35 919.88,417.69"];
	Run_Miniprot_slow	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 660 305.5 660 324.5 718 324.5 718 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 689 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="689,315",
		rects="660,305.5,718,324.5",
		width=0.80556];
	Get_Genomic_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 761.79 350.52 755.22 348.31 748.76 345.51 743 342 738.43 339.21 739.42 336.02 735 333 732.07 331 728.88 329.2 \
725.59 327.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 726.58 325.35 719.19 324.78 724.61 329.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 760 335.6 0 34 6 -genome ",
		label=genome,
		lp="760,337.5",
		pos="e,717.8,324.17 761.79,350.52 755.22,348.31 748.76,345.51 743,342 738.43,339.21 739.42,336.02 735,333 732.07,331 728.88,329.2 725.59,\
327.59"];
	Get_Genomic_FASTA -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 13 826.19 350.65 829.33 348.3 832.18 345.43 834 342 835.87 338.46 835.23 336.81 834 333 818.82 286.05 803.32 278.45 \
769 243 767.89 241.86 766.7 240.72 765.48 239.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.3 237.95 760.34 235.38 764.17 241.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 853 290.6 0 70 16 -delta_seqs_input ",
		label=delta_seqs_input,
		lp="853,292.5",
		pos="e,759.17,234.41 826.19,350.65 829.33,348.3 832.18,345.43 834,342 835.87,338.46 835.23,336.81 834,333 818.82,286.05 803.32,278.45 \
769,243 767.89,241.86 766.7,240.72 765.48,239.62"];
	Run_Miniprot_fast	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 738 305.5 738 324.5 796 324.5 796 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 767 312.5 0 42 8 -miniprot ",
		height=0.27778,
		label=miniprot,
		pos="767,315",
		rects="738,305.5,796,324.5",
		width=0.80556];
	Get_Genomic_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 805.06 350.62 802.23 345.18 798.03 338.17 793 333 791.75 331.71 790.38 330.47 788.95 329.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 790.74 327.56 783.65 325.39 787.84 331.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 816 335.6 0 34 6 -genome ",
		label=genome,
		lp="816,337.5",
		pos="e,782.43,324.49 805.06,350.62 802.23,345.18 798.03,338.17 793,333 791.75,331.71 790.38,330.47 788.95,329.29"];
	Extract_Proteins_From_Compartments -> Filter_Short_Sequences	[_draw_="c 7 -#000000 B 7 337.98 395.54 330.86 392.92 323.07 389.94 316 387 305.54 382.65 294.16 377.45 284.42 372.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.74 370.77 278.36 369.98 283.63 375.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330 380.6 0 28 6 -seqids ",
		label=seqids,
		lp="330,382.5",
		pos="e,277,369.33 337.98,395.54 330.86,392.92 323.07,389.94 316,387 305.54,382.65 294.16,377.45 284.42,372.86"];
	Extract_Proteins_From_Compartments -> Get_Protein_FASTA	[_draw_="c 7 -#000000 B 7 380.68 395.53 394.13 389.76 412.86 382.4 430 378 452.65 372.19 460.85 374.65 483.51 370.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 483.88 373.17 490.3 369.45 482.96 368.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 440 380.6 0 20 6 -gilist ",
		label=gilist,
		lp="440,382.5",
		pos="e,491.78,369.16 380.68,395.53 394.13,389.76 412.86,382.4 430,378 452.65,372.19 460.85,374.65 483.51,370.75"];
	Filter_Full_Coverage_Alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 224.27 215.5 207.47 208.94 184.04 199.78 165.54 192.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 166.51 190.3 159.1 190.03 164.72 194.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 212 200.6 0 22 5 -input ",
		label=input,
		lp="212,202.5",
		pos="e,157.69,189.48 224.27,215.5 207.47,208.94 184.04,199.78 165.54,192.55"];
	Align_Short_Proteins -> Sort_Short_Protein_Alignments	[_draw_="c 7 -#000000 B 4 325.55 305.71 318.77 299.76 309.48 291.61 301.61 284.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.43 283.04 296.56 280.26 300.2 286.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 325 290.6 0 22 5 -input ",
		label=input,
		lp="325,292.5",
		pos="e,295.42,279.27 325.55,305.71 318.77,299.76 309.48,291.61 301.61,284.7"];
	Filter_Protein_Alignments -> align	[_draw_="c 7 -#000000 B 4 92 80.71 92 75.59 92 68.85 92 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 94.45 62.78 92 55.78 89.55 62.78 ",
		pos="e,92,54.265 92,80.709 92,75.593 92,68.848 92,62.666"];
	Run_Miniprot_slow -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 700.46 305.5 708.56 299.5 719.59 291.32 728.88 284.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 730.18 286.52 734.35 280.38 727.27 282.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 730 290.6 0 14 3 -paf ",
		label=paf,
		lp="730,292.5",
		pos="e,735.56,279.48 700.46,305.5 708.56,299.5 719.59,291.32 728.88,284.43"];
	Remap_cross_origin_alignments -> Filter_Protein_Compartments	[_draw_="c 7 -#000000 B 4 694.64 220.32 575.61 211.94 286.61 191.6 178.1 183.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.35 181.52 171.2 183.48 178.01 186.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507 200.6 0 22 5 -input ",
		label=input,
		lp="507,202.5",
		pos="e,169.69,183.37 694.64,220.32 575.61,211.94 286.61,191.6 178.1,183.96"];
	Convert_PAF_Alignments -> Remap_cross_origin_alignments	[_draw_="c 7 -#000000 B 4 747 260.71 747 255.59 747 248.85 747 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 749.45 242.78 747 235.78 744.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 757.5 245.6 0 21 5 -align ",
		label=align,
		lp="757.5,247.5",
		pos="e,747,234.27 747,260.71 747,255.59 747,248.85 747,242.67"];
	Filter_Protein_Compartments -> Sort_Protein_Alignments	[_draw_="c 7 -#000000 B 4 127.52 170.71 121.55 164.88 113.42 156.93 106.44 150.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 108.26 148.46 101.54 145.32 104.83 151.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 129 155.6 0 22 5 -input ",
		label=input,
		lp="129,157.5",
		pos="e,100.46,144.27 127.52,170.71 121.55,164.88 113.42,156.93 106.44,150.12"];
	Compute_Gencode_int	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 625.5 350.5 625.5 369.5 752.5 369.5 752.5 350.5 ",
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	Compute_Gencode_int -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 10 625.51 351.97 611.03 349.52 595.84 346.28 582 342 573.07 339.24 572.03 335.39 563 333 535.35 325.69 466.59 321.22 \
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	Compute_Gencode_int -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 4 689 350.71 689 345.59 689 338.85 689 332.67 ",
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		lp="692,337.5",
		pos="e,689,324.27 689,350.71 689,345.59 689,338.85 689,332.67"];
	Compute_Gencode_int -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 7 748.46 350.53 763.29 347.83 775.67 344.82 778 342 780.52 338.95 780.36 335.24 778.95 331.58 ",
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		label=T,
		lp="782,337.5",
		pos="e,774.79,324.4 748.46,350.53 763.29,347.83 775.67,344.82 778,342 780.52,338.95 780.36,335.24 778.95,331.58"];
	Sort_Short_Protein_Alignments -> Filter_Full_Coverage_Alignments	[_draw_="c 7 -#000000 B 4 278.29 260.71 272.86 254.88 265.47 246.93 259.13 240.12 ",
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		label=sorted_seeds,
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		pos="e,253.69,234.27 278.29,260.71 272.86,254.88 265.47,246.93 259.13,240.12"];
	Sort_Protein_Alignments -> Filter_Protein_Alignments	[_draw_="c 7 -#000000 B 4 92 125.71 92 120.59 92 113.85 92 107.67 ",
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		label=file_in,
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		pos="e,92,99.265 92,125.71 92,120.59 92,113.85 92,107.67"];
	Filter_Short_Sequences -> Align_Short_Proteins	[_draw_="c 7 -#000000 B 4 274.82 350.5 285.71 344.26 300.68 335.68 312.97 328.63 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318 335.6 0 28 6 -seqids ",
		label=seqids,
		lp="318,337.5",
		pos="e,320.21,324.48 274.82,350.5 285.71,344.26 300.68,335.68 312.97,328.63"];
	Run_Miniprot_fast -> Convert_PAF_Alignments	[_draw_="c 7 -#000000 B 4 763.14 305.71 760.65 300.36 757.33 293.22 754.35 286.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 756.66 285.95 751.48 280.64 752.21 288.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 765 290.6 0 14 3 -paf ",
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		lp="765,292.5",
		pos="e,750.84,279.27 763.14,305.71 760.65,300.36 757.33,293.22 754.35,286.81"];
	Compute_Gencode -> Compute_Gencode_int	[_draw_="c 7 -#000000 B 4 899.24 395.5 856 388.41 794.31 378.28 748.93 370.84 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 854 380.6 0 22 5 -input ",
		label=input,
		lp="854,382.5",
		pos="e,740.66,369.48 899.24,395.5 856,388.41 794.31,378.28 748.93,370.84"];
	Get_Protein_FASTA -> Run_Miniprot_slow	[_draw_="c 7 -#000000 B 10 548.39 352.51 552.93 351.59 557.58 350.72 562 350 593.78 344.84 603.02 350.78 634 342 635.68 341.52 650.35 334.58 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 664.96 330.3 670.22 325.06 662.84 325.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="670,337.5",
		pos="e,671.58,324.4 548.39,352.51 552.93,351.59 557.58,350.72 562,350 593.78,344.84 603.02,350.78 634,342 635.68,341.52 650.35,334.58 \
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	Get_Protein_FASTA -> Run_Miniprot_fast	[_draw_="c 7 -#000000 B 13 548.36 352.32 552.91 351.43 557.57 350.61 562 350 590.68 346.07 665.97 354.66 692 342 696.81 339.66 695.43 335.78 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 730.3 325.84 736.59 321.92 729.22 321.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717 335.6 0 34 8 -proteins ",
		label=proteins,
		lp="717,337.5",
		pos="e,738.07,321.58 548.36,352.32 552.91,351.43 557.57,350.61 562,350 590.68,346.07 665.97,354.66 692,342 696.81,339.66 695.43,335.78 \
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}