digraph workflow {
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		bb="0,0,763,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 131 305 131 360 755 360 755 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 181 348 0 84 15 -Workflow Inputs ",
			bb="131,305,755,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="181,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		delly_type	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 459 313.5 459 332.5 527 332.5 527 313.5 ",
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			fillcolor="#94DDF4",
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			label=delly_type,
			pos="493,323",
			rects="459,313.5,527,332.5",
			width=0.94444];
		tumor_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 335 313.5 335 332.5 455 332.5 455 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 320.5 0 104 17 -tumor_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_sample_name,
			pos="395,323",
			rects="335,313.5,455,332.5",
			width=1.6667];
		vep_data	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 139 313.5 139 332.5 201 332.5 201 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 170 320.5 0 46 8 -vep_data ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vep_data,
			pos="170,323",
			rects="139,313.5,201,332.5",
			width=0.86111];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 205.5 313.5 205.5 332.5 330.5 332.5 330.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 320.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="268,323",
			rects="205.5,313.5,330.5,332.5",
			width=1.7361];
		genome	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 531 313.5 531 332.5 587 332.5 587 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 559 320.5 0 40 6 -genome ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome,
			pos="559,323",
			rects="531,313.5,587,332.5",
			width=0.77778];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 591 313.5 591 332.5 669 332.5 669 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 630 320.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="630,323",
			rects="591,313.5,669,332.5",
			width=1.0833];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 673.5 313.5 673.5 332.5 746.5 332.5 746.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 710 320.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="710,323",
			rects="673.5,313.5,746.5,332.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 131 8 131 63 644 63 644 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 185 15 0 92 16 -Workflow Outputs ",
			bb="131,8,644,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="185,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		delly_sv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 477.5 35.5 477.5 54.5 534.5 54.5 534.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506 42.5 0 41 8 -delly_sv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=delly_sv,
			pos="506,45",
			rects="477.5,35.5,534.5,54.5",
			width=0.79167];
		merged_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 269 35.5 269 54.5 343 54.5 343 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 306 42.5 0 58 11 -merged_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_file,
			pos="306,45",
			rects="269,35.5,343,54.5",
			width=1.0278];
		delly_filtered_sv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 538.5 35.5 538.5 54.5 635.5 54.5 635.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 587 42.5 0 81 17 -delly_filtered_sv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=delly_filtered_sv,
			pos="587,45",
			rects="538.5,35.5,635.5,54.5",
			width=1.3472];
		maf_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 139 35.5 139 54.5 195 54.5 195 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 42.5 0 40 8 -maf_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=maf_file,
			pos="167,45",
			rects="139,35.5,195,54.5",
			width=0.77778];
		merged_file_unfiltered	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 347 35.5 347 54.5 473 54.5 473 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 410 42.5 0 110 22 -merged_file_unfiltered ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_file_unfiltered,
			pos="410,45",
			rects="347,35.5,473,54.5",
			width=1.75];
		portal_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 199.5 35.5 199.5 54.5 264.5 54.5 264.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 232 42.5 0 49 11 -portal_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=portal_file,
			pos="232,45",
			rects="199.5,35.5,264.5,54.5",
			width=0.90278];
	}
	call_sv_by_delly	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 477.5 215.5 477.5 234.5 574.5 234.5 574.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 526 222.5 0 81 16 -call_sv_by_delly ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=call_sv_by_delly,
		pos="526,225",
		rects="477.5,215.5,574.5,234.5",
		width=1.3472];
	delly_type -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 511.81 313.53 537.89 301.74 581.96 281.64 583 280 587.77 272.5 587.39 267.73 583 260 577.61 250.51 568.41 243.39 \
558.96 238.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 560.1 236.02 552.74 235.09 557.91 240.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 607 268.1 0 42 10 -delly_type ",
		label=delly_type,
		lp="607,270",
		pos="e,551.39,234.41 511.81,313.53 537.89,301.74 581.96,281.64 583,280 587.77,272.5 587.39,267.73 583,260 577.61,250.51 568.41,243.39 \
558.96,238.19"];
	merge_with_bcftools	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 192 170.5 192 189.5 310 189.5 310 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 251 177.5 0 102 19 -merge_with_bcftools ",
		height=0.27778,
		label=merge_with_bcftools,
		pos="251,180",
		rects="192,170.5,310,189.5",
		width=1.6389];
	tumor_sample_name -> merge_with_bcftools	[_draw_="c 7 -#000000 B 10 364.14 313.53 353.65 310.72 341.83 307.64 331 305 315.08 301.12 307.39 307.73 295 297 287.14 290.2 266.13 227.75 \
256.26 197.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.64 196.79 254.15 190.88 253.98 198.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 316.5 245.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="316.5,247.5",
		pos="e,253.69,189.44 364.14,313.53 353.65,310.72 341.83,307.64 331,305 315.08,301.12 307.39,307.73 295,297 287.14,290.2 266.13,227.75 \
256.26,197.4"];
	convert_vcf2maf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 127.5 125.5 127.5 144.5 208.5 144.5 208.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 168 132.5 0 65 11 -cmo-vcf2maf ",
		height=0.27778,
		label="cmo-vcf2maf",
		pos="168,135",
		rects="127.5,125.5,208.5,144.5",
		width=1.125];
	tumor_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 13 365.16 313.57 354.43 310.68 342.21 307.53 331 305 294.9 296.86 168 308 168 271 168 271 168 271 168 179 168 170.31 \
168 160.63 168 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 170.45 152.76 168 145.76 165.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 194 223.1 0 52 12 -vcf_tumor_id ",
		label=vcf_tumor_id,
		lp="194,225",
		pos="e,168,144.24 365.16,313.57 354.43,310.68 342.21,307.53 331,305 294.9,296.86 168,308 168,271 168,271 168,271 168,179 168,170.31 168,\
160.63 168,152.65"];
	tumor_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 13 393.39 313.63 390.82 301.39 385.14 278.08 376 260 371.63 251.35 329.67 197.86 324 190 317.65 181.2 318.77 176.39 \
310 170 282.85 150.21 245.75 141.8 216.28 138.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 216.91 135.89 209.69 137.58 216.39 140.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 376 223.1 0 36 8 -tumor_id ",
		label=tumor_id,
		lp="376,225",
		pos="e,208.19,137.42 393.39,313.63 390.82,301.39 385.14,278.08 376,260 371.63,251.35 329.67,197.86 324,190 317.65,181.2 318.77,176.39 \
310,170 282.85,150.21 245.75,141.8 216.28,138.29"];
	tumor_sample_name -> call_sv_by_delly	[_draw_="c 7 -#000000 B 16 426.2 313.52 436.62 310.74 448.29 307.68 459 305 474.06 301.23 482.72 308.63 493 297 503.95 284.61 486.8 273.02 \
497 260 503.42 251.81 511.97 259.67 519 252 521.42 249.36 523.02 245.98 524.07 242.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 526.47 243.03 525.42 235.69 521.66 242.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 539.5 268.1 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="539.5,270",
		pos="e,525.72,234.21 426.2,313.52 436.62,310.74 448.29,307.68 459,305 474.06,301.23 482.72,308.63 493,297 503.95,284.61 486.8,273.02 \
497,260 503.42,251.81 511.97,259.67 519,252 521.42,249.36 523.02,245.98 524.07,242.53"];
	merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 325 170.5 325 189.5 495 189.5 495 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 410 177.5 0 154 30 -merge_with_bcftools_unfiltered ",
		height=0.27778,
		label=merge_with_bcftools_unfiltered,
		pos="410,180",
		rects="325,170.5,495,189.5",
		width=2.3611];
	tumor_sample_name -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 7 394.35 313.66 393.38 299.21 391.95 268.6 395 243 396.88 227.25 401.35 209.71 404.93 197.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.23 198.17 406.89 190.76 402.54 196.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 245.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="437.5,247.5",
		pos="e,407.32,189.31 394.35,313.66 393.38,299.21 391.95,268.6 395,243 396.88,227.25 401.35,209.71 404.93,197.32"];
	createTNPair	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 402.5 260.5 402.5 279.5 481.5 279.5 481.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 442 267.5 0 63 12 -createTNPair ",
		height=0.27778,
		label=createTNPair,
		pos="442,270",
		rects="402.5,260.5,481.5,279.5",
		width=1.0972];
	tumor_sample_name -> createTNPair	[_draw_="c 7 -#000000 B 7 397.32 313.59 399.73 306.14 404.12 295.32 411 288 412.3 286.62 413.73 285.32 415.26 284.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 416.63 286.15 421.06 280.2 413.89 282.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 453.5 290.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="453.5,292.5",
		pos="e,422.31,279.35 397.32,313.59 399.73,306.14 404.12,295.32 411,288 412.3,286.62 413.73,285.32 415.26,284.11"];
	vep_data -> convert_vcf2maf	[_draw_="c 7 -#000000 B 10 139.21 319.12 90.22 313.67 0 299.73 0 271 0 271 0 271 0 179 0 154.17 69.75 143.48 119.37 139.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.48 141.47 126.25 138.44 119.07 136.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 19 223.1 0 38 8 -vep_data ",
		label=vep_data,
		lp="19,225",
		pos="e,127.76,138.31 139.21,319.12 90.225,313.67 0,299.73 0,271 0,271 0,271 0,179 0,154.17 69.754,143.48 119.37,139.03"];
	normal_sample_name -> merge_with_bcftools	[_draw_="c 7 -#000000 B 19 235.68 313.55 224.7 310.75 212.33 307.66 201 305 145.82 292.04 113.48 301.01 85 252 82.99 248.54 82.35 246 85 \
243 94.64 232.1 137.53 242.5 150 235 159.3 229.41 155.47 221.71 164 215 177.03 204.76 193.52 197.27 208.63 191.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 209.07 194.41 214.94 189.88 207.53 189.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130 245.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="130,247.5",
		pos="e,216.38,189.41 235.68,313.55 224.7,310.75 212.33,307.66 201,305 145.82,292.04 113.48,301.01 85,252 82.99,248.54 82.35,246 85,243 \
94.642,232.1 137.53,242.5 150,235 159.3,229.41 155.47,221.71 164,215 177.03,204.76 193.52,197.27 208.63,191.98"];
	normal_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 16 239.89 313.57 228 310.35 213.93 306.97 201 305 184.83 302.53 66.89 307.07 54 297 44.47 289.56 46 283.09 46 271 \
46 271 46 271 46 179 46 162.63 85.58 150.96 119.65 143.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.84 146.4 126.23 142.64 118.89 141.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 74 223.1 0 56 13 -vcf_normal_id ",
		label=vcf_normal_id,
		lp="74,225",
		pos="e,127.71,142.34 239.89,313.57 228,310.35 213.93,306.97 201,305 184.83,302.53 66.889,307.07 54,297 44.474,289.56 46,283.09 46,271 \
46,271 46,271 46,179 46,162.63 85.578,150.96 119.65,143.94"];
	normal_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 19 238.52 313.52 226.91 310.44 213.41 307.19 201 305 151.2 296.21 121.15 319.83 90 280 79.69 266.82 73.74 256.94 \
83 243 88.07 235.37 95.72 241.68 102 235 108.45 228.14 104.58 223.31 109 215 121.97 190.63 142.02 165.6 155.08 150.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.78 152.21 159.54 145.32 153.09 148.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 129 223.1 0 40 9 -normal_id ",
		label=normal_id,
		lp="129,225",
		pos="e,160.53,144.19 238.52,313.52 226.91,310.44 213.41,307.19 201,305 151.2,296.21 121.15,319.83 90,280 79.69,266.82 73.742,256.94 83,\
243 88.068,235.37 95.725,241.68 102,235 108.45,228.14 104.58,223.31 109,215 121.97,190.63 142.02,165.6 155.08,150.43"];
	normal_sample_name -> call_sv_by_delly	[_draw_="c 7 -#000000 B 13 271.24 313.51 276.98 299.76 290.3 272.85 311 260 331.61 247.2 341.47 257.92 365 252 376.45 249.12 378.52 245.75 \
390 243 415.78 236.83 444.88 232.81 469.52 230.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 469.47 232.7 476.19 229.57 468.99 227.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 356 268.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="356,270",
		pos="e,477.7,229.42 271.24,313.51 276.98,299.76 290.3,272.85 311,260 331.61,247.2 341.47,257.92 365,252 376.45,249.12 378.52,245.75 390,\
243 415.78,236.83 444.88,232.81 469.52,230.24"];
	normal_sample_name -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 13 246.31 313.57 214.38 299.94 160.87 271.67 184 243 194.57 229.91 204.71 239.22 221 235 275.85 220.78 288.41 213.19 \
343 198 350.89 195.8 359.34 193.57 367.48 191.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.85 193.91 374.02 189.81 366.64 189.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 245.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="229,247.5",
		pos="e,375.49,189.43 246.31,313.57 214.38,299.94 160.87,271.67 184,243 194.57,229.91 204.71,239.22 221,235 275.85,220.78 288.41,213.19 \
343,198 350.89,195.8 359.34,193.57 367.48,191.48"];
	normal_sample_name -> createTNPair	[_draw_="c 7 -#000000 B 10 276.12 313.75 284.55 305.73 298.5 293.94 313 288 338.3 277.64 346.89 283.57 374 280 380.7 279.12 387.78 278.18 \
394.73 277.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.69 279.74 401.31 276.39 394.05 274.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 358 290.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="358,292.5",
		pos="e,402.81,276.2 276.12,313.75 284.55,305.73 298.5,293.94 313,288 338.3,277.64 346.89,283.57 374,280 380.7,279.12 387.78,278.18 394.73,\
277.26"];
	genome -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 574.61 313.66 595.82 302.25 631.34 282.86 633 280 637.47 272.32 637.83 267.46 633 260 621.96 242.97 602.2 234.17 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.12 227.32 575.78 228.36 582.17 232.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 653 268.1 0 34 6 -genome ",
		label=genome,
		lp="653,270",
		pos="e,574.29,228.07 574.61,313.66 595.82,302.25 631.34,282.86 633,280 637.47,272.32 637.83,267.46 633,260 621.96,242.97 602.2,234.17 \
582.64,229.72"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 679 260.5 679 279.5 747 279.5 747 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 713 267.5 0 52 9 -cmo-index ",
		height=0.27778,
		label="cmo-index",
		pos="713,270",
		rects="679,260.5,747,279.5",
		width=0.94444];
	normal_bam -> index	[_draw_="c 7 -#000000 B 7 641.94 313.55 652.14 306.45 667.29 296.18 681 288 683.64 286.42 686.44 284.83 689.24 283.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 690.22 285.54 695.21 280.06 687.89 281.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 695.5 290.6 0 29 6 -normal ",
		label=normal,
		lp="695.5,292.5",
		pos="e,696.55,279.34 641.94,313.55 652.14,306.45 667.29,296.18 681,288 683.64,286.42 686.44,284.83 689.24,283.28"];
	tumor_bam -> index	[_draw_="c 7 -#000000 B 4 710.5 313.58 710.91 306.52 711.52 296.24 712.03 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 714.46 287.91 712.42 280.78 709.57 287.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 723.5 290.6 0 25 5 -tumor ",
		label=tumor,
		lp="723.5,292.5",
		pos="e,712.51,279.26 710.5,313.58 710.91,306.52 711.52,296.24 712.03,287.55"];
	portal_format_output	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 180.5 80.5 180.5 99.5 253.5 99.5 253.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 217 87.5 0 57 10 -format-maf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="format-maf",
		pos="217,90",
		rects="180.5,80.5,253.5,99.5",
		width=1.0139];
	portal_format_output -> portal_file	[_draw_="c 7 -#000000 B 4 219.89 80.71 221.72 75.47 224.14 68.53 226.34 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 228.63 63.11 228.62 55.69 224 61.5 ",
		pos="e,229.12,54.265 219.89,80.709 221.72,75.474 224.14,68.534 226.34,62.235"];
	merge_with_bcftools -> merged_file	[_draw_="c 7 -#000000 B 4 254.44 170.68 263.39 149.03 287.53 90.67 299.33 62.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.57 63.12 301.98 55.72 297.04 61.25 ",
		pos="e,302.56,54.317 254.44,170.68 263.39,149.03 287.53,90.667 299.33,62.139"];
	merge_with_bcftools -> convert_vcf2maf	[_draw_="c 7 -#000000 B 4 234.6 170.5 222.32 164.14 205.35 155.35 191.61 148.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.05 146.22 185.71 145.17 190.8 150.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 235.5 155.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="235.5,157.5",
		pos="e,184.36,144.48 234.6,170.5 222.32,164.14 205.35,155.35 191.61,148.23"];
	index -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 679.09 260.78 671.62 258.41 663.89 255.49 657 252 651.05 248.99 651.16 245.55 645 243 625.51 234.93 602.86 230.58 \
582.59 228.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.07 225.86 575.86 227.59 582.57 230.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 682.5 245.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="682.5,247.5",
		pos="e,574.35,227.43 679.09,260.78 671.62,258.41 663.89,255.49 657,252 651.05,248.99 651.16,245.55 645,243 625.51,234.93 602.86,230.58 \
582.59,228.27"];
	index -> call_sv_by_delly	[_draw_="c 7 -#000000 B 7 712.75 260.64 712.09 254.77 710.2 247.24 705 243 695.59 235.34 631.56 230.71 582.75 228.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.06 225.82 575.95 227.93 582.83 230.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733 245.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="733,247.5",
		pos="e,574.44,227.86 712.75,260.64 712.09,254.77 710.2,247.24 705,243 695.59,235.34 631.56,230.71 582.75,228.26"];
	convert_vcf2maf -> maf_file	[_draw_="c 7 -#000000 B 4 167.9 125.56 167.74 111.14 167.4 81.48 167.19 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 169.64 62.77 167.11 55.8 164.74 62.82 ",
		pos="e,167.09,54.284 167.9,125.56 167.74,111.14 167.4,81.476 167.19,62.727"];
	convert_vcf2maf -> portal_format_output	[_draw_="c 7 -#000000 B 4 177.45 125.71 184.23 119.76 193.52 111.61 201.39 104.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 202.8 106.72 206.44 100.26 199.57 103.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 217.5 110.6 0 41 9 -input_maf ",
		label=input_maf,
		lp="217.5,112.5",
		pos="e,207.58,99.265 177.45,125.71 184.23,119.76 193.52,111.61 201.39,104.7"];
	call_sv_by_delly -> delly_sv	[_draw_="c 7 -#000000 B 10 522.84 215.57 519.91 206.99 516 193.26 516 181 516 181 516 181 516 89 516 80.09 513.94 70.41 511.69 62.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 514.05 61.82 509.62 55.88 509.37 63.29 ",
		pos="e,509.16,54.432 522.84,215.57 519.91,206.99 516,193.26 516,181 516,181 516,181 516,89 516,80.09 513.94,70.405 511.69,62.486"];
	call_sv_by_delly -> delly_filtered_sv	[_draw_="c 7 -#000000 B 10 536.49 215.64 545.14 207.73 556 195.02 556 181 556 181 556 181 556 89 556 77.93 562.85 67.77 570.11 60.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 571.71 61.95 575.07 55.34 568.32 58.42 ",
		pos="e,576.16,54.289 536.49,215.64 545.14,207.73 556,195.02 556,181 556,181 556,181 556,89 556,77.928 562.85,67.765 570.11,60.103"];
	call_sv_by_delly -> merge_with_bcftools	[_draw_="c 7 -#000000 B 7 477.77 218.25 453.24 215.18 422.99 211.18 396 207 365.19 202.23 330.85 196.1 303.32 191 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.83 188.6 296.5 189.73 302.93 193.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 425 200.6 0 58 14 -pass_bcf_files ",
		label=pass_bcf_files,
		lp="425,202.5",
		pos="e,295.01,189.45 477.77,218.25 453.24,215.18 422.99,211.18 396,207 365.19,202.23 330.85,196.1 303.32,191"];
	call_sv_by_delly -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 7 502.03 215.64 494.34 212.93 485.8 209.87 478 207 465.38 202.35 451.49 197.07 439.58 192.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 440.52 190.23 433.1 190 438.75 194.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 495 200.6 0 34 9 -bcf_files ",
		label=bcf_files,
		lp="495,202.5",
		pos="e,431.69,189.45 502.03,215.64 494.34,212.93 485.8,209.87 478,207 465.38,202.35 451.49,197.07 439.58,192.49"];
	merge_with_bcftools_unfiltered -> merged_file_unfiltered	[_draw_="c 7 -#000000 B 4 410 170.68 410 149.13 410 91.17 410 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 412.45 62.83 410 55.83 407.55 62.83 ",
		pos="e,410,54.317 410,170.68 410,149.13 410,91.169 410,62.509"];
	createTNPair -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 463.9 260.52 469.6 258.03 475.64 255.12 481 252 486.76 248.65 487.35 246.54 493 243 495.55 241.4 498.27 239.82 \
501.02 238.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 501.86 240.63 506.89 235.18 499.56 236.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507.5 245.6 0 29 8 -pairfile ",
		label=pairfile,
		lp="507.5,247.5",
		pos="e,508.23,234.47 463.9,260.52 469.6,258.03 475.64,255.12 481,252 486.76,248.65 487.35,246.54 493,243 495.55,241.4 498.27,239.82 501.02,\
238.3"];
}