digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 763 368 763 0 ",
		bb="0,0,763,368",
		bgcolor="#eeeeee",
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		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 131 305 131 360 755 360 755 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 181 348 0 84 15 -Workflow Inputs ",
			bb="131,305,755,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="181,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		delly_type	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 459 313.5 459 332.5 527 332.5 527 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 493 320.5 0 52 10 -delly_type ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=delly_type,
			pos="493,323",
			rects="459,313.5,527,332.5",
			width=0.94444];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 205.5 313.5 205.5 332.5 330.5 332.5 330.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 320.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="268,323",
			rects="205.5,313.5,330.5,332.5",
			width=1.7361];
		tumor_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 335 313.5 335 332.5 455 332.5 455 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 320.5 0 104 17 -tumor_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_sample_name,
			pos="395,323",
			rects="335,313.5,455,332.5",
			width=1.6667];
		genome	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 531 313.5 531 332.5 587 332.5 587 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 559 320.5 0 40 6 -genome ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome,
			pos="559,323",
			rects="531,313.5,587,332.5",
			width=0.77778];
		vep_data	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 139 313.5 139 332.5 201 332.5 201 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 170 320.5 0 46 8 -vep_data ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vep_data,
			pos="170,323",
			rects="139,313.5,201,332.5",
			width=0.86111];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 591.5 313.5 591.5 332.5 664.5 332.5 664.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 628 320.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="628,323",
			rects="591.5,313.5,664.5,332.5",
			width=1.0139];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 669 313.5 669 332.5 747 332.5 747 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 708 320.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="708,323",
			rects="669,313.5,747,332.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 129 8 129 63 642 63 642 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 183 15 0 92 16 -Workflow Outputs ",
			bb="129,8,642,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="183,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		maf_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 207 35.5 207 54.5 263 54.5 263 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 235 42.5 0 40 8 -maf_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=maf_file,
			pos="235,45",
			rects="207,35.5,263,54.5",
			width=0.77778];
		portal_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 137.5 35.5 137.5 54.5 202.5 54.5 202.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 170 42.5 0 49 11 -portal_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=portal_file,
			pos="170,45",
			rects="137.5,35.5,202.5,54.5",
			width=0.90278];
		delly_filtered_sv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 536.5 35.5 536.5 54.5 633.5 54.5 633.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 585 42.5 0 81 17 -delly_filtered_sv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=delly_filtered_sv,
			pos="585,45",
			rects="536.5,35.5,633.5,54.5",
			width=1.3472];
		merged_file_unfiltered	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 345 35.5 345 54.5 471 54.5 471 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 408 42.5 0 110 22 -merged_file_unfiltered ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_file_unfiltered,
			pos="408,45",
			rects="345,35.5,471,54.5",
			width=1.75];
		merged_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 267 35.5 267 54.5 341 54.5 341 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 304 42.5 0 58 11 -merged_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_file,
			pos="304,45",
			rects="267,35.5,341,54.5",
			width=1.0278];
		delly_sv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 475.5 35.5 475.5 54.5 532.5 54.5 532.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 504 42.5 0 41 8 -delly_sv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=delly_sv,
			pos="504,45",
			rects="475.5,35.5,532.5,54.5",
			width=0.79167];
	}
	call_sv_by_delly	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 477.5 215.5 477.5 234.5 574.5 234.5 574.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 526 222.5 0 81 16 -call_sv_by_delly ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=call_sv_by_delly,
		pos="526,225",
		rects="477.5,215.5,574.5,234.5",
		width=1.3472];
	delly_type -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 511.81 313.53 537.89 301.74 581.96 281.64 583 280 587.77 272.5 587.39 267.73 583 260 577.61 250.51 568.41 243.39 \
558.96 238.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 560.1 236.02 552.74 235.09 557.91 240.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 607 268.1 0 42 10 -delly_type ",
		label=delly_type,
		lp="607,270",
		pos="e,551.39,234.41 511.81,313.53 537.89,301.74 581.96,281.64 583,280 587.77,272.5 587.39,267.73 583,260 577.61,250.51 568.41,243.39 \
558.96,238.19"];
	createTNPair	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 402.5 260.5 402.5 279.5 481.5 279.5 481.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 442 267.5 0 63 12 -createTNPair ",
		height=0.27778,
		label=createTNPair,
		pos="442,270",
		rects="402.5,260.5,481.5,279.5",
		width=1.0972];
	normal_sample_name -> createTNPair	[_draw_="c 7 -#000000 B 7 276.12 313.75 284.55 305.74 298.5 293.94 313 288 313.98 287.6 358.19 281.82 394.57 277.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.55 279.58 401.17 276.26 393.92 274.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 358 290.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="358,292.5",
		pos="e,402.67,276.06 276.12,313.75 284.55,305.74 298.5,293.94 313,288 313.98,287.6 358.19,281.82 394.57,277.11"];
	merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 324 170.5 324 189.5 494 189.5 494 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 409 177.5 0 154 30 -merge_with_bcftools_unfiltered ",
		height=0.27778,
		label=merge_with_bcftools_unfiltered,
		pos="409,180",
		rects="324,170.5,494,189.5",
		width=2.3611];
	normal_sample_name -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 7 246 313.51 214.29 300.01 161.85 272.18 184 243 186.85 239.25 304.39 208.2 368.41 191.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.7 193.98 374.86 189.84 367.47 189.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 245.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="229,247.5",
		pos="e,376.32,189.46 246,313.51 214.29,300.01 161.85,272.18 184,243 186.85,239.25 304.39,208.2 368.41,191.52"];
	merge_with_bcftools	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 192 170.5 192 189.5 310 189.5 310 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 251 177.5 0 102 19 -merge_with_bcftools ",
		height=0.27778,
		label=merge_with_bcftools,
		pos="251,180",
		rects="192,170.5,310,189.5",
		width=1.6389];
	normal_sample_name -> merge_with_bcftools	[_draw_="c 7 -#000000 B 19 235.68 313.55 224.7 310.75 212.33 307.66 201 305 145.82 292.04 113.48 301.01 85 252 82.99 248.54 82.35 246 85 \
243 94.64 232.1 137.53 242.5 150 235 159.3 229.41 155.47 221.71 164 215 177.03 204.76 193.52 197.27 208.63 191.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 209.07 194.41 214.94 189.88 207.53 189.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130 245.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="130,247.5",
		pos="e,216.38,189.41 235.68,313.55 224.7,310.75 212.33,307.66 201,305 145.82,292.04 113.48,301.01 85,252 82.99,248.54 82.35,246 85,243 \
94.642,232.1 137.53,242.5 150,235 159.3,229.41 155.47,221.71 164,215 177.03,204.76 193.52,197.27 208.63,191.98"];
	convert_vcf2maf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 127.5 125.5 127.5 144.5 208.5 144.5 208.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 168 132.5 0 65 11 -cmo-vcf2maf ",
		height=0.27778,
		label="cmo-vcf2maf",
		pos="168,135",
		rects="127.5,125.5,208.5,144.5",
		width=1.125];
	normal_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 16 239.89 313.57 228 310.35 213.93 306.97 201 305 184.83 302.53 66.89 307.07 54 297 44.47 289.56 46 283.09 46 271 \
46 271 46 271 46 179 46 162.63 85.58 150.96 119.65 143.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.84 146.4 126.23 142.64 118.89 141.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 74 223.1 0 56 13 -vcf_normal_id ",
		label=vcf_normal_id,
		lp="74,225",
		pos="e,127.71,142.34 239.89,313.57 228,310.35 213.93,306.97 201,305 184.83,302.53 66.889,307.07 54,297 44.474,289.56 46,283.09 46,271 \
46,271 46,271 46,179 46,162.63 85.578,150.96 119.65,143.94"];
	normal_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 19 238.52 313.52 226.91 310.44 213.41 307.19 201 305 151.2 296.21 121.15 319.83 90 280 79.69 266.82 73.74 256.94 \
83 243 88.07 235.37 95.72 241.68 102 235 108.45 228.14 104.58 223.31 109 215 121.97 190.63 142.02 165.6 155.08 150.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.78 152.21 159.54 145.32 153.09 148.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 129 223.1 0 40 9 -normal_id ",
		label=normal_id,
		lp="129,225",
		pos="e,160.53,144.19 238.52,313.52 226.91,310.44 213.41,307.19 201,305 151.2,296.21 121.15,319.83 90,280 79.69,266.82 73.742,256.94 83,\
243 88.068,235.37 95.725,241.68 102,235 108.45,228.14 104.58,223.31 109,215 121.97,190.63 142.02,165.6 155.08,150.43"];
	normal_sample_name -> call_sv_by_delly	[_draw_="c 7 -#000000 B 13 271.24 313.51 276.98 299.76 290.3 272.85 311 260 331.61 247.2 341.47 257.92 365 252 376.45 249.12 378.52 245.75 \
390 243 415.78 236.83 444.88 232.81 469.52 230.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 469.47 232.7 476.19 229.57 468.99 227.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 356 268.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="356,270",
		pos="e,477.7,229.42 271.24,313.51 276.98,299.76 290.3,272.85 311,260 331.61,247.2 341.47,257.92 365,252 376.45,249.12 378.52,245.75 390,\
243 415.78,236.83 444.88,232.81 469.52,230.24"];
	tumor_sample_name -> createTNPair	[_draw_="c 7 -#000000 B 7 397.32 313.59 399.73 306.14 404.12 295.32 411 288 412.3 286.62 413.73 285.32 415.26 284.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 416.63 286.15 421.06 280.2 413.89 282.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 453.5 290.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="453.5,292.5",
		pos="e,422.31,279.35 397.32,313.59 399.73,306.14 404.12,295.32 411,288 412.3,286.62 413.73,285.32 415.26,284.11"];
	tumor_sample_name -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 7 394.4 313.66 393.48 299.22 392.14 268.63 395 243 396.75 227.29 400.93 209.75 404.26 197.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 406.57 198.18 406.09 190.78 401.85 196.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 245.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="437.5,247.5",
		pos="e,406.5,189.32 394.4,313.66 393.48,299.22 392.14,268.63 395,243 396.75,227.29 400.93,209.75 404.26,197.35"];
	tumor_sample_name -> merge_with_bcftools	[_draw_="c 7 -#000000 B 10 364.13 313.57 353.64 310.76 341.83 307.67 331 305 315.51 301.17 308.07 307.43 296 297 288.12 290.19 266.55 227.74 \
256.41 197.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.77 196.75 254.24 190.88 254.12 198.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318.5 245.6 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="318.5,247.5",
		pos="e,253.76,189.44 364.13,313.57 353.64,310.76 341.83,307.67 331,305 315.51,301.17 308.07,307.43 296,297 288.12,290.19 266.55,227.74 \
256.41,197.4"];
	tumor_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 16 393.75 313.53 391.67 301.15 386.72 277.68 377 260 372.14 251.17 370.18 248.88 362 243 354.56 237.65 349.71 241.24 \
343 235 319.29 212.92 334.77 190.88 310 170 284.13 148.2 246.65 139.89 216.68 136.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 217.14 134.5 209.96 136.35 216.72 139.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 369 223.1 0 52 12 -vcf_tumor_id ",
		label=vcf_tumor_id,
		lp="369,225",
		pos="e,208.45,136.23 393.75,313.53 391.67,301.15 386.72,277.68 377,260 372.14,251.17 370.18,248.88 362,243 354.56,237.65 349.71,241.24 \
343,235 319.29,212.92 334.77,190.88 310,170 284.13,148.2 246.65,139.89 216.68,136.92"];
	tumor_sample_name -> convert_vcf2maf	[_draw_="c 7 -#000000 B 13 364.83 313.54 354.18 310.67 342.09 307.55 331 305 294.94 296.7 168 308 168 271 168 271 168 271 168 179 168 170.31 \
168 160.63 168 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 170.45 152.76 168 145.76 165.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 186 223.1 0 36 8 -tumor_id ",
		label=tumor_id,
		lp="186,225",
		pos="e,168,144.24 364.83,313.54 354.18,310.67 342.09,307.55 331,305 294.94,296.7 168,308 168,271 168,271 168,271 168,179 168,170.31 168,\
160.63 168,152.65"];
	tumor_sample_name -> call_sv_by_delly	[_draw_="c 7 -#000000 B 16 426.2 313.52 436.62 310.74 448.29 307.68 459 305 474.06 301.23 482.72 308.63 493 297 503.95 284.61 486.8 273.02 \
497 260 503.42 251.81 511.97 259.67 519 252 521.42 249.36 523.02 245.98 524.07 242.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 526.47 243.03 525.42 235.69 521.66 242.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 539.5 268.1 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="539.5,270",
		pos="e,525.72,234.21 426.2,313.52 436.62,310.74 448.29,307.68 459,305 474.06,301.23 482.72,308.63 493,297 503.95,284.61 486.8,273.02 \
497,260 503.42,251.81 511.97,259.67 519,252 521.42,249.36 523.02,245.98 524.07,242.53"];
	genome -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 574.67 313.67 594.36 303.04 625.95 285.4 629 280 633.38 272.26 634.21 267.2 629 260 618.09 244.91 600.25 236.41 \
582.45 231.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.16 229.3 575.78 230.07 582.02 234.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 649 268.1 0 34 6 -genome ",
		label=genome,
		lp="649,270",
		pos="e,574.31,229.72 574.67,313.67 594.36,303.04 625.95,285.4 629,280 633.38,272.26 634.21,267.2 629,260 618.09,244.91 600.25,236.41 \
582.45,231.65"];
	vep_data -> convert_vcf2maf	[_draw_="c 7 -#000000 B 10 139.21 319.12 90.22 313.67 0 299.73 0 271 0 271 0 271 0 179 0 154.17 69.75 143.48 119.37 139.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.48 141.47 126.25 138.44 119.07 136.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 19 223.1 0 38 8 -vep_data ",
		label=vep_data,
		lp="19,225",
		pos="e,127.76,138.31 139.21,319.12 90.225,313.67 0,299.73 0,271 0,271 0,271 0,179 0,154.17 69.754,143.48 119.37,139.03"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 679 260.5 679 279.5 747 279.5 747 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 713 267.5 0 52 9 -cmo-index ",
		height=0.27778,
		label="cmo-index",
		pos="713,270",
		rects="679,260.5,747,279.5",
		width=0.94444];
	tumor_bam -> index	[_draw_="c 7 -#000000 B 7 641.77 313.56 653.09 306.64 669.54 296.62 684 288 686.36 286.59 688.82 285.13 691.28 283.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 692.42 285.86 697.21 280.2 689.94 281.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 696.5 290.6 0 25 5 -tumor ",
		label=tumor,
		lp="696.5,292.5",
		pos="e,698.52,279.43 641.77,313.56 653.09,306.64 669.54,296.62 684,288 686.36,286.59 688.82,285.13 691.28,283.68"];
	normal_bam -> index	[_draw_="c 7 -#000000 B 4 708.83 313.58 709.52 306.52 710.53 296.24 711.38 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 713.8 287.98 712.04 280.77 708.92 287.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 725.5 290.6 0 29 6 -normal ",
		label=normal,
		lp="725.5,292.5",
		pos="e,712.19,279.26 708.83,313.58 709.52,306.52 710.53,296.24 711.38,287.55"];
	index -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 679.09 260.78 671.62 258.41 663.89 255.49 657 252 651.05 248.99 651.16 245.55 645 243 625.51 234.93 602.86 230.58 \
582.59 228.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.07 225.86 575.86 227.59 582.57 230.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 682.5 245.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="682.5,247.5",
		pos="e,574.35,227.43 679.09,260.78 671.62,258.41 663.89,255.49 657,252 651.05,248.99 651.16,245.55 645,243 625.51,234.93 602.86,230.58 \
582.59,228.27"];
	index -> call_sv_by_delly	[_draw_="c 7 -#000000 B 7 712.75 260.64 712.09 254.77 710.2 247.24 705 243 695.59 235.34 631.56 230.71 582.75 228.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.06 225.82 575.95 227.93 582.83 230.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733 245.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="733,247.5",
		pos="e,574.44,227.86 712.75,260.64 712.09,254.77 710.2,247.24 705,243 695.59,235.34 631.56,230.71 582.75,228.26"];
	portal_format_output	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 133.5 80.5 133.5 99.5 206.5 99.5 206.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 170 87.5 0 57 10 -format-maf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="format-maf",
		pos="170,90",
		rects="133.5,80.5,206.5,99.5",
		width=1.0139];
	portal_format_output -> portal_file	[_draw_="c 7 -#000000 B 4 170 80.71 170 75.59 170 68.85 170 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.45 62.78 170 55.78 167.55 62.78 ",
		pos="e,170,54.265 170,80.709 170,75.593 170,68.848 170,62.666"];
	createTNPair -> call_sv_by_delly	[_draw_="c 7 -#000000 B 10 463.9 260.52 469.6 258.03 475.64 255.12 481 252 486.76 248.65 487.35 246.54 493 243 495.55 241.4 498.27 239.82 \
501.02 238.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 501.86 240.63 506.89 235.18 499.56 236.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 507.5 245.6 0 29 8 -pairfile ",
		label=pairfile,
		lp="507.5,247.5",
		pos="e,508.23,234.47 463.9,260.52 469.6,258.03 475.64,255.12 481,252 486.76,248.65 487.35,246.54 493,243 495.55,241.4 498.27,239.82 501.02,\
238.3"];
	merge_with_bcftools_unfiltered -> merged_file_unfiltered	[_draw_="c 7 -#000000 B 4 408.94 170.68 408.78 149.13 408.34 91.17 408.12 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.58 62.81 408.07 55.83 405.68 62.85 ",
		pos="e,408.06,54.317 408.94,170.68 408.78,149.13 408.34,91.169 408.12,62.509"];
	merge_with_bcftools -> merged_file	[_draw_="c 7 -#000000 B 4 254.32 170.68 262.94 149.03 286.2 90.67 297.57 62.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.81 63.13 300.13 55.72 295.26 61.32 ",
		pos="e,300.69,54.317 254.32,170.68 262.94,149.03 286.2,90.667 297.57,62.139"];
	merge_with_bcftools -> convert_vcf2maf	[_draw_="c 7 -#000000 B 4 234.6 170.5 222.32 164.14 205.35 155.35 191.61 148.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.05 146.22 185.71 145.17 190.8 150.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 235.5 155.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="235.5,157.5",
		pos="e,184.36,144.48 234.6,170.5 222.32,164.14 205.35,155.35 191.61,148.23"];
	convert_vcf2maf -> maf_file	[_draw_="c 7 -#000000 B 7 199.94 125.64 204.41 123.4 208.62 120.57 212 117 226.14 102.05 231.59 78.32 233.69 62.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 236.11 62.88 234.41 55.66 231.23 62.36 ",
		pos="e,234.58,54.158 199.94,125.64 204.41,123.4 208.62,120.57 212,117 226.14,102.05 231.59,78.321 233.69,62.461"];
	convert_vcf2maf -> portal_format_output	[_draw_="c 7 -#000000 B 4 168.39 125.71 168.62 120.59 168.94 113.85 169.22 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 171.67 107.88 169.55 100.78 166.77 107.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190.5 110.6 0 41 9 -input_maf ",
		label=input_maf,
		lp="190.5,112.5",
		pos="e,169.62,99.265 168.39,125.71 168.62,120.59 168.94,113.85 169.22,107.67"];
	call_sv_by_delly -> delly_filtered_sv	[_draw_="c 7 -#000000 B 10 528.53 215.52 530.88 206.91 534 193.15 534 181 534 181 534 181 534 89 534 75.57 544.46 65.49 555.91 58.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 556.82 60.77 561.75 55.23 554.44 56.48 ",
		pos="e,563.08,54.498 528.53,215.52 530.88,206.91 534,193.15 534,181 534,181 534,181 534,89 534,75.573 544.46,65.488 555.91,58.472"];
	call_sv_by_delly -> delly_sv	[_draw_="c 7 -#000000 B 10 523.47 215.52 521.12 206.91 518 193.15 518 181 518 181 518 181 518 89 518 79.78 515.05 69.96 511.86 62.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 514.12 61.1 509.04 55.69 509.64 63.08 ",
		pos="e,508.43,54.306 523.47,215.52 521.12,206.91 518,193.15 518,181 518,181 518,181 518,89 518,79.775 515.05,69.96 511.86,62.039"];
	call_sv_by_delly -> merge_with_bcftools_unfiltered	[_draw_="c 7 -#000000 B 4 502.88 215.5 484.86 208.88 459.65 199.61 439.89 192.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 440.9 190.12 433.49 190 439.21 194.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 494 200.6 0 34 9 -bcf_files ",
		label=bcf_files,
		lp="494,202.5",
		pos="e,432.07,189.48 502.88,215.5 484.86,208.88 459.65,199.61 439.89,192.35"];
	call_sv_by_delly -> merge_with_bcftools	[_draw_="c 7 -#000000 B 7 477.61 218.07 453.63 215.01 424.25 211.06 398 207 366.76 202.17 331.93 196.04 304.01 190.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.77 188.59 297.44 189.74 303.88 193.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 427 200.6 0 58 14 -pass_bcf_files ",
		label=pass_bcf_files,
		lp="427,202.5",
		pos="e,295.95,189.47 477.61,218.07 453.63,215.01 424.25,211.06 398,207 366.76,202.17 331.93,196.04 304.01,190.94"];
}