digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 500 413 500 0 ",
		bb="0,0,500,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
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		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
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			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,492,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		microsatellites_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 358.5 16 377.5 126 377.5 126 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 71 365.5 0 94 20 -microsatellites_file ",
			fillcolor="#94DDF4",
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			pos="71,368",
			rects="16,358.5,126,377.5",
			width=1.5278];
		tumor_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 130 358.5 130 377.5 228 377.5 228 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 179 365.5 0 82 15 -tumor_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam_files,
			pos="179,368",
			rects="130,358.5,228,377.5",
			width=1.3611];
		normal_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 232 358.5 232 377.5 336 377.5 336 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 284 365.5 0 88 16 -normal_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam_files,
			pos="284,368",
			rects="232,358.5,336,377.5",
			width=1.4444];
		data_clinical_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 386 358.5 386 377.5 484 377.5 484 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 435 365.5 0 82 18 -data_clinical_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=data_clinical_file,
			pos="435,368",
			rects="386,358.5,484,377.5",
			width=1.3611];
		pairs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 340.5 358.5 340.5 377.5 381.5 377.5 381.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 361 365.5 0 25 5 -pairs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pairs,
			pos="361,368",
			rects="340.5,358.5,381.5,377.5",
			width=0.56944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 326 8 326 63 434 63 434 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 380 15 0 92 16 -Workflow Outputs ",
			bb="326,8,434,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="380,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		output_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 346 35.5 346 54.5 414 54.5 414 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 380 42.5 0 52 11 -output_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_file,
			pos="380,45",
			rects="346,35.5,414,54.5",
			width=0.94444];
	}
	run_msi_add_sample_id	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 217 305.5 217 324.5 351 324.5 351 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 284 312.5 0 118 21 -run_msi_add_sample_id ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=run_msi_add_sample_id,
		pos="284,315",
		rects="217,305.5,351,324.5",
		width=1.8611];
	microsatellites_file -> run_msi_add_sample_id	[_draw_="c 7 -#000000 B 7 85.13 358.52 99.08 350.57 121.26 339.03 142 333 163.35 326.79 187.14 322.85 209.06 320.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 209.15 322.8 215.85 319.61 208.62 317.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 180.5 335.6 0 77 20 -microsatellites_file ",
		label=microsatellites_file,
		lp="180.5,337.5",
		pos="e,217.35,319.45 85.132,358.52 99.079,350.57 121.26,339.03 142,333 163.35,326.79 187.14,322.85 209.06,320.34"];
	tumor_bam_files -> run_msi_add_sample_id	[_draw_="c 7 -#000000 B 7 191.54 358.74 203.04 351.39 220.73 340.63 237 333 241.33 330.97 245.97 329.03 250.59 327.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.17 329.62 256.87 324.87 249.45 325.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 260 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="260,337.5",
		pos="e,258.29,324.34 191.54,358.74 203.04,351.39 220.73,340.63 237,333 241.33,330.97 245.97,329.03 250.59,327.23"];
	normal_bam_files -> run_msi_add_sample_id	[_draw_="c 7 -#000000 B 4 284 358.58 284 351.52 284 341.24 284 332.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 286.45 332.78 284 325.78 281.55 332.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="309.5,337.5",
		pos="e,284,324.26 284,358.58 284,351.52 284,341.24 284,332.55"];
	merge_data_clinical	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 322.5 80.5 322.5 99.5 437.5 99.5 437.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 380 87.5 0 99 19 -merge_data_clinical ",
		height=0.27778,
		label=merge_data_clinical,
		pos="380,90",
		rects="322.5,80.5,437.5,99.5",
		width=1.5972];
	data_clinical_file -> merge_data_clinical	[_draw_="c 7 -#000000 B 13 426.16 358.5 417.31 349.04 405 332.85 405 316 405 316 405 316 405 134 405 121.77 402.33 118.46 396 108 395.54 \
107.24 395.04 106.48 394.51 105.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 396.57 104.38 390.21 100.58 392.81 107.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 418.5 223.1 0 27 6 -table1 ",
		label=table1,
		lp="418.5,225",
		pos="e,389.24,99.412 426.16,358.5 417.31,349.04 405,332.85 405,316 405,316 405,316 405,134 405,121.77 402.33,118.46 396,108 395.54,107.24 \
395.04,106.48 394.51,105.73"];
	pairs -> run_msi_add_sample_id	[_draw_="c 7 -#000000 B 7 356.77 358.56 352.52 350.86 345.26 339.7 336 333 333.35 331.08 330.47 329.37 327.47 327.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 328.61 325.67 321.22 325.05 326.61 330.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 353 335.6 0 16 4 -pair ",
		label=pair,
		lp="353,337.5",
		pos="e,319.84,324.44 356.77,358.56 352.52,350.86 345.26,339.7 336,333 333.35,331.08 330.47,329.37 327.47,327.85"];
	concat_msi_tables	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 258.5 260.5 258.5 279.5 365.5 279.5 365.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 312 267.5 0 91 17 -concat_msi_tables ",
		height=0.27778,
		label=concat_msi_tables,
		pos="312,270",
		rects="258.5,260.5,365.5,279.5",
		width=1.4861];
	run_msi_add_sample_id -> concat_msi_tables	[_draw_="c 7 -#000000 B 4 289.4 305.71 292.96 300.24 297.74 292.9 301.98 286.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.03 287.74 305.79 280.53 299.92 285.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 321.5 290.6 0 43 11 -input_files ",
		label=input_files,
		lp="321.5,292.5",
		pos="e,306.62,279.27 289.4,305.71 292.96,300.24 297.74,292.9 301.98,286.38"];
	replace_col_name	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 278.5 215.5 278.5 234.5 383.5 234.5 383.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 331 222.5 0 89 16 -replace_col_name ",
		height=0.27778,
		label=replace_col_name,
		pos="331,225",
		rects="278.5,215.5,383.5,234.5",
		width=1.4583];
	add_msi_status_col	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 282.5 170.5 282.5 189.5 395.5 189.5 395.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 339 177.5 0 97 18 -add_msi_status_col ",
		height=0.27778,
		label=add_msi_status_col,
		pos="339,180",
		rects="282.5,170.5,395.5,189.5",
		width=1.5694];
	replace_col_name -> add_msi_status_col	[_draw_="c 7 -#000000 B 4 332.54 215.71 333.52 210.47 334.81 203.53 335.98 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 338.31 198.08 337.19 190.75 333.5 197.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 365.5 200.6 0 61 14 -input_filename ",
		label=input_filename,
		lp="365.5,202.5",
		pos="e,337.46,189.27 332.54,215.71 333.52,210.47 334.81,203.53 335.98,197.24"];
	merge_data_clinical -> output_file	[_draw_="c 7 -#000000 B 4 380 80.71 380 75.59 380 68.85 380 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 382.45 62.78 380 55.78 377.55 62.78 ",
		pos="e,380,54.265 380,80.709 380,75.593 380,68.848 380,62.666"];
	concat_msi_tables -> replace_col_name	[_draw_="c 7 -#000000 B 4 315.66 260.71 318.03 255.36 321.18 248.22 324.02 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.15 243.04 326.74 235.65 321.67 241.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 342 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="342,247.5",
		pos="e,327.35,234.27 315.66,260.71 318.03,255.36 321.18,248.22 324.02,241.81"];
	cut_msi_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 309.5 125.5 309.5 144.5 394.5 144.5 394.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 352 132.5 0 69 13 -cut_msi_table ",
		height=0.27778,
		label=cut_msi_table,
		pos="352,135",
		rects="309.5,125.5,394.5,144.5",
		width=1.1806];
	add_msi_status_col -> cut_msi_table	[_draw_="c 7 -#000000 B 4 341.51 170.71 343.09 165.47 345.19 158.53 347.09 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 349.38 153.12 349.06 145.71 344.69 151.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 365 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="365,157.5",
		pos="e,349.5,144.27 341.51,170.71 343.09,165.47 345.19,158.53 347.09,152.24"];
	cut_msi_table -> merge_data_clinical	[_draw_="c 7 -#000000 B 4 357.4 125.71 360.96 120.24 365.74 112.9 369.98 106.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 372.03 107.74 373.79 100.53 367.92 105.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 381.5 110.6 0 27 6 -table2 ",
		label=table2,
		lp="381.5,112.5",
		pos="e,374.62,99.265 357.4,125.71 360.96,120.24 365.74,112.9 369.98,106.38"];
}