digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 451 233 451 0 ",
		bb="0,0,451,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
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		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 170 8 225 367 225 367 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 213 0 84 15 -Workflow Inputs ",
			bb="8,170,367,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		merged_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 277.5 178.5 277.5 197.5 358.5 197.5 358.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 318 185.5 0 65 10 -merged_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=merged_bam,
			pos="318,188",
			rects="277.5,178.5,358.5,197.5",
			width=1.125];
		threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 220.5 178.5 220.5 197.5 273.5 197.5 273.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 185.5 0 37 7 -threads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=threads,
			pos="247,188",
			rects="220.5,178.5,273.5,197.5",
			width=0.73611];
		encode_blacklist	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 118 178.5 118 197.5 216 197.5 216 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 185.5 0 82 16 -encode_blacklist ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=encode_blacklist,
			pos="167,188",
			rects="118,178.5,216,197.5",
			width=1.3611];
		alignment_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 178.5 16 197.5 114 197.5 114 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 65 185.5 0 82 15 -alignment_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=alignment_index,
			pos="65,188",
			rects="16,178.5,114,197.5",
			width=1.3611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 204 8 204 63 401 63 401 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 258 15 0 92 16 -Workflow Outputs ",
			bb="204,8,401,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="258,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		alignment_qc_report	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 275.5 35.5 275.5 54.5 392.5 54.5 392.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 334 42.5 0 101 19 -alignment_qc_report ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=alignment_qc_report,
			pos="334,45",
			rects="275.5,35.5,392.5,54.5",
			width=1.625];
		bam_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 212.5 35.5 212.5 54.5 271.5 54.5 271.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 242 42.5 0 43 8 -bam_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=bam_file,
			pos="242,45",
			rects="212.5,35.5,271.5,54.5",
			width=0.81944];
	}
	alignment_qc	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 292.5 125.5 292.5 144.5 375.5 144.5 375.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 334 132.5 0 67 12 -alignment_qc ",
		height=0.27778,
		pos="334,135",
		rects="292.5,125.5,375.5,144.5",
		width=1.1528];
	merged_bam -> alignment_qc	[_draw_="c 7 -#000000 B 7 358.44 181.36 381.08 177.28 406.13 170.91 413 162 424.03 147.69 405.4 141.16 383.48 138.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 384.03 135.82 376.8 137.46 383.48 140.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 433.5 155.6 0 35 8 -bam_file ",
		label=bam_file,
		lp="433.5,157.5",
		pos="e,375.3,137.29 358.44,181.36 381.08,177.28 406.13,170.91 413,162 424.03,147.69 405.4,141.16 383.48,138.22"];
	sort_bam_file	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204.5 125.5 204.5 144.5 287.5 144.5 287.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 246 132.5 0 67 13 -sort_bam_file ",
		height=0.27778,
		pos="246,135",
		rects="204.5,125.5,287.5,144.5",
		width=1.1528];
	merged_bam -> sort_bam_file	[_draw_="c 7 -#000000 B 7 313.21 178.68 307.97 169.83 299.69 156.6 295 153 292.57 151.14 289.92 149.47 287.16 147.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.38 145.84 281 145.07 286.28 150.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 356.5 155.6 0 109 23 -unsorted_paired_end_bam ",
		label=unsorted_paired_end_bam,
		lp="356.5,157.5",
		pos="e,279.63,144.42 313.21,178.68 307.97,169.83 299.69,156.6 295,153 292.57,151.14 289.92,149.47 287.16,147.97"];
	threads -> alignment_qc	[_draw_="c 7 -#000000 B 7 248.47 178.73 250.28 170.94 254.16 159.52 262 153 263.21 152 273.98 149.28 286.85 146.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 287.3 148.72 293.58 144.77 286.21 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 278 155.6 0 32 7 -threads ",
		label=threads,
		lp="278,157.5",
		pos="e,295.06,144.44 248.47,178.73 250.28,170.94 254.16,159.52 262,153 263.21,152 273.98,149.28 286.85,146.31"];
	threads -> sort_bam_file	[_draw_="c 7 -#000000 B 10 237.04 178.83 232.44 174.39 227.45 168.49 225 162 223.59 158.26 223.28 156.61 225 153 225.45 152.05 225.99 151.13 \
226.59 150.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 228.16 152.16 231.13 145.36 224.57 148.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 241 155.6 0 32 7 -threads ",
		label=threads,
		lp="241,157.5",
		pos="e,232.16,144.25 237.04,178.83 232.44,174.39 227.45,168.49 225,162 223.59,158.26 223.28,156.61 225,153 225.45,152.05 225.99,151.13 \
226.59,150.25"];
	snaptools_remove_blacklist	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 165.5 80.5 165.5 99.5 318.5 99.5 318.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 242 87.5 0 137 26 -snaptools_remove_blacklist ",
		height=0.27778,
		pos="242,90",
		rects="165.5,80.5,318.5,99.5",
		width=2.125];
	encode_blacklist -> snaptools_remove_blacklist	[_draw_="c 7 -#000000 B 7 164.88 178.54 162.18 165.77 159.1 141.31 170 125 176.8 114.82 187.51 107.61 198.62 102.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 199.39 104.88 204.92 99.94 197.52 100.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 186.5 133.1 0 33 8 -bed_file ",
		label=bed_file,
		lp="186.5,135",
		pos="e,206.32,99.364 164.88,178.54 162.18,165.77 159.1,141.31 170,125 176.8,114.82 187.51,107.61 198.62,102.54"];
	alignment_qc -> alignment_qc_report	[_draw_="c 7 -#000000 B 4 334 125.56 334 111.14 334 81.48 334 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.45 62.8 334 55.8 331.55 62.8 ",
		pos="e,334,54.284 334,125.56 334,111.14 334,81.476 334,62.727"];
	sort_bam_file -> snaptools_remove_blacklist	[_draw_="c 7 -#000000 B 4 245.23 125.71 244.75 120.59 244.13 113.85 243.55 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 246 107.52 242.91 100.77 241.12 107.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 261.5 110.6 0 35 8 -bam_file ",
		label=bam_file,
		lp="261.5,112.5",
		pos="e,242.77,99.265 245.23,125.71 244.75,120.59 244.13,113.85 243.55,107.67"];
	snaptools_remove_blacklist -> bam_file	[_draw_="c 7 -#000000 B 4 242 80.71 242 75.59 242 68.85 242 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 244.45 62.78 242 55.78 239.55 62.78 ",
		pos="e,242,54.265 242,80.709 242,75.593 242,68.848 242,62.666"];
}