digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 410.5 1719 410.5 1719 0 ",
		bb="0,0,1719,410.5",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 680 279 680 353 1584 353 1584 279 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 730 341 0 84 15 -Workflow Inputs ",
			bb="680,279,1584,353",
			label="Workflow Inputs",
			lheight=0.15,
			lp="730,343.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		fastq_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 936.5 287.5 936.5 306.5 1109.5 306.5 1109.5 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1023 294.5 0 157 32 -Directory containing FASTQ files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing FASTQ files",
			pos="1023,297",
			rects="936.5,287.5,1109.5,306.5",
			width=2.4028];
		expected_cell_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1180 287.5 1180 306.5 1296 306.5 1296 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1238 294.5 0 100 19 -expected_cell_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expected_cell_count,
			pos="1238,297",
			rects="1180,287.5,1296,306.5",
			width=1.6111];
		threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1300 287.5 1300 306.5 1464 306.5 1464 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1382 294.5 0 148 28 -Number of threads for Salmon ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Number of threads for Salmon",
			pos="1382,297",
			rects="1300,287.5,1464,306.5",
			width=2.2778];
		assay	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 831.5 287.5 831.5 306.5 932.5 306.5 932.5 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 882 294.5 0 85 15 -scRNA-seq assay ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scRNA-seq assay",
			pos="882,297",
			rects="831.5,287.5,932.5,306.5",
			width=1.4028];
		organism	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1114 287.5 1114 306.5 1176 306.5 1176 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1145 294.5 0 46 8 -organism ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=organism,
			pos="1145,297",
			rects="1114,287.5,1176,306.5",
			width=0.86111];
		metadata_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 688 287.5 688 306.5 770 306.5 770 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729 294.5 0 66 12 -metadata_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=metadata_dir,
			pos="729,297",
			rects="688,287.5,770,306.5",
			width=1.1389];
		keep_all_barcodes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1468.5 287.5 1468.5 306.5 1575.5 306.5 1575.5 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1522 294.5 0 91 17 -keep_all_barcodes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=keep_all_barcodes,
			pos="1522,297",
			rects="1468.5,287.5,1575.5,306.5",
			width=1.4861];
		img_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 774.5 287.5 774.5 306.5 827.5 306.5 827.5 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 801 294.5 0 37 7 -img_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=img_dir,
			pos="801,297",
			rects="774.5,287.5,827.5,306.5",
			width=0.73611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 82 1348 82 1348 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1348,82",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		genome_build_json	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 952 54.5 952 73.5 1172 73.5 1172 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1062 61.5 0 204 39 -Genome build information in JSON format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Genome build information in JSON format",
			pos="1062,64",
			rects="952,54.5,1172,73.5",
			width=3.0556];
		salmon_output	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1176 54.5 1176 73.5 1340 73.5 1340 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1258 61.5 0 148 30 -Full output of `salmon alevin` ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Full output of `salmon alevin`",
			pos="1258,64",
			rects="1176,54.5,1340,73.5",
			width=2.2778];
		count_matrix_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 54.5 16 73.5 450 73.5 450 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 233 61.5 0 418 84 -Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced \
counts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced counts",
			pos="233,64",
			rects="16,54.5,450,73.5",
			width=6.0278];
		raw_count_matrix	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454 54.5 454 73.5 948 73.5 948 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 701 61.5 0 478 96 -Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts \
as separate columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts as separate columns",
			pos="701,64",
			rects="454,54.5,948,73.5",
			width=6.8611];
	}
	annotate_cells	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 592.5 99.5 592.5 118.5 909.5 118.5 909.5 99.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 751 106.5 0 301 63 -Assay-specific annotation of cell barcodes after quantification ",
		height=0.27778,
		label="Assay-specific annotation of cell barcodes after quantification",
		pos="751,109",
		rects="592.5,99.5,909.5,118.5",
		width=4.4028];
	fastq_dir -> annotate_cells	[_draw_="c 7 -#000000 B 16 978.69 287.5 944.08 280.78 901.57 272.33 900 271 880.31 254.41 897.53 234.88 879 217 871.21 209.49 865 215.01 \
856 209 815.43 181.89 821.37 157.14 783 127 781.1 125.51 779.05 124.08 776.93 122.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 778.22 120.64 770.94 119.23 775.75 124.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 886 197.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="886,199",
		pos="e,769.63,118.47 978.69,287.5 944.08,280.78 901.57,272.33 900,271 880.31,254.41 897.53,234.88 879,217 871.21,209.49 865,215.01 856,\
209 815.43,181.89 821.37,157.14 783,127 781.1,125.51 779.05,124.08 776.93,122.73"];
	adjust_barcodes	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 446.5 287.5 446.5 306.5 671.5 306.5 671.5 287.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 559 294.5 0 209 42 -Assay-specific adjustment of cell barcodes ",
		height=0.27778,
		label="Assay-specific adjustment of cell barcodes",
		pos="559,297",
		rects="446.5,287.5,671.5,306.5",
		width=3.125];
	fastq_dir -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 1012.31 306.35 996.35 319.61 964.76 343.28 933 352.25 878.68 367.59 734.14 364.33 679 352.25 642.77 344.31 604.43 \
324.35 581.1 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 582.36 308.63 575.09 307.15 579.85 312.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 851 363.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="851,365.5",
		pos="e,573.79,306.38 1012.3,306.35 996.35,319.61 964.76,343.28 933,352.25 878.68,367.59 734.14,364.33 679,352.25 642.77,344.31 604.43,\
324.35 581.1,310.73"];
	trim_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1001.5 234.5 1001.5 253.5 1096.5 253.5 1096.5 234.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1049 241.5 0 79 16 -Trim FASTQ files ",
		height=0.27778,
		label="Trim FASTQ files",
		pos="1049,244",
		rects="1001.5,234.5,1096.5,253.5",
		width=1.3194];
	fastq_dir -> trim_reads	[_draw_="c 7 -#000000 B 7 1020.89 287.63 1019.53 280.4 1018.73 269.89 1023 262 1023.52 261.04 1024.12 260.12 1024.78 259.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1026.42 261.08 1029.78 254.48 1023.03 257.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1053 264.6 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="1053,266.5",
		pos="e,1030.9,253.43 1020.9,287.63 1019.5,280.4 1018.7,269.89 1023,262 1023.5,261.04 1024.1,260.12 1024.8,259.25"];
	salmon	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 941.5 189.5 941.5 208.5 1148.5 208.5 1148.5 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1045 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="1045,199",
		rects="941.5,189.5,1148.5,208.5",
		width=2.875];
	fastq_dir -> salmon	[_draw_="c 7 -#000000 B 13 1019.81 287.77 1016.26 279.78 1009.7 268 1000 262 977.13 247.84 957.72 274.24 940 254 934.14 247.31 934.77 241.19 \
940 234 944.05 228.43 976.68 218.39 1004.51 210.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1005.02 213.06 1011.12 208.84 1003.72 208.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 970 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="970,244",
		pos="e,1012.6,208.44 1019.8,287.77 1016.3,279.78 1009.7,268 1000,262 977.13,247.84 957.72,274.24 940,254 934.14,247.31 934.77,241.19 \
940,234 944.05,228.43 976.68,218.39 1004.5,210.66"];
	"salmon-mouse"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1152.5 189.5 1152.5 208.5 1359.5 208.5 1359.5 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1256 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="1256,199",
		rects="1152.5,189.5,1359.5,208.5",
		width=2.875];
	fastq_dir -> "salmon-mouse"	[_draw_="c 7 -#000000 B 13 1068.53 287.51 1106.84 280.35 1155.48 271.24 1156 271 1166.9 265.96 1170.09 263.82 1177 254 1182.42 246.3 1177.7 \
241 1184 234 1192.95 224.06 1205.43 216.77 1217.49 211.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1218.32 213.86 1223.9 208.98 1216.49 209.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1214 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="1214,244",
		pos="e,1225.3,208.42 1068.5,287.51 1106.8,280.35 1155.5,271.24 1156,271 1166.9,265.96 1170.1,263.82 1177,254 1182.4,246.3 1177.7,241 \
1184,234 1193,224.06 1205.4,216.77 1217.5,211.56"];
	expected_cell_count -> salmon	[_draw_="c 7 -#000000 B 7 1254.63 287.58 1276.05 275.66 1308.67 253.18 1292 234 1286.65 227.85 1202.09 217.17 1133.38 209.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1133.82 207 1126.59 208.65 1133.27 211.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1337.5 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="1337.5,244",
		pos="e,1125.1,208.48 1254.6,287.58 1276.1,275.66 1308.7,253.18 1292,234 1286.7,227.85 1202.1,217.17 1133.4,209.41"];
	expected_cell_count -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1268.98 287.52 1311.05 275.94 1381.24 256.34 1383 254 1400.19 231.13 1373.7 217.84 1340.55 210.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1341.3 207.83 1333.94 208.76 1340.27 212.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1429.5 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="1429.5,244",
		pos="e,1332.5,208.44 1269,287.52 1311,275.94 1381.2,256.34 1383,254 1400.2,231.13 1373.7,217.84 1340.5,210.18"];
	threads -> trim_reads	[_draw_="c 7 -#000000 B 7 1342.28 287.57 1327.76 284.64 1311.17 281.47 1296 279 1212.45 265.4 1188.86 266.9 1104.66 254.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1105.1 252.11 1097.81 253.5 1104.38 256.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1255 264.6 0 32 7 -threads ",
		label=threads,
		lp="1255,266.5",
		pos="e,1096.3,253.28 1342.3,287.57 1327.8,284.64 1311.2,281.47 1296,279 1212.5,265.4 1188.9,266.9 1104.7,254.52"];
	threads -> salmon	[_draw_="c 7 -#000000 B 7 1413.66 287.54 1447.57 277.02 1493.77 257.54 1472 234 1449.14 209.27 1215.14 211.53 1155.1 208.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1155.39 206.53 1148.26 208.58 1155.11 211.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1493 242.1 0 32 7 -threads ",
		label=threads,
		lp="1493,244",
		pos="e,1146.8,208.49 1413.7,287.54 1447.6,277.02 1493.8,257.54 1472,234 1449.1,209.27 1215.1,211.53 1155.1,208.97"];
	threads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 1424.42 287.57 1438.31 284.82 1453.81 281.77 1468 279 1528.01 267.3 1639.04 279.32 1598 234 1582.55 216.93 1461.41 \
208.09 1367.65 203.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1367.85 201.31 1360.75 203.44 1367.63 206.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1622 242.1 0 32 7 -threads ",
		label=threads,
		lp="1622,244",
		pos="e,1359.2,203.37 1424.4,287.57 1438.3,284.82 1453.8,281.77 1468,279 1528,267.3 1639,279.32 1598,234 1582.5,216.93 1461.4,208.09 1367.6,\
203.75"];
	assay -> annotate_cells	[_draw_="c 7 -#000000 B 10 856.59 287.55 829.05 277.6 789 260.47 789 245 789 245 789 245 789 153 789 141.09 780.72 130.93 771.88 123.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 773.4 121.55 766.35 119.25 770.42 125.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 801.5 197.1 0 25 5 -assay ",
		label=assay,
		lp="801.5,199",
		pos="e,765.15,118.33 856.59,287.55 829.05,277.6 789,260.47 789,245 789,245 789,245 789,153 789,141.09 780.72,130.93 771.88,123.48"];
	assay -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 876.43 306.24 867.91 319.37 850.25 342.88 828 352.25 766.96 377.94 743.69 366.43 679 352.25 642.77 344.31 604.43 \
324.35 581.1 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 582.36 308.63 575.09 307.15 579.85 312.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 751 363.6 0 25 5 -assay ",
		label=assay,
		lp="751,365.5",
		pos="e,573.79,306.38 876.43,306.24 867.91,319.37 850.25,342.88 828,352.25 766.96,377.94 743.69,366.43 679,352.25 642.77,344.31 604.43,\
324.35 581.1,310.73"];
	assay -> trim_reads	[_draw_="c 7 -#000000 B 13 908.81 287.53 917.75 284.76 927.79 281.69 937 279 949.83 275.25 953.19 274.82 966 271 978.53 267.26 981.53 265.93 \
994 262 1000.3 260.01 1007.01 257.92 1013.51 255.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.16 258.27 1020.12 253.86 1012.71 253.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1006.5 264.6 0 25 5 -assay ",
		label=assay,
		lp="1006.5,266.5",
		pos="e,1021.6,253.41 908.81,287.53 917.75,284.76 927.79,281.69 937,279 949.83,275.25 953.19,274.82 966,271 978.53,267.26 981.53,265.93 \
994,262 1000.3,260.01 1007,257.92 1013.5,255.91"];
	alevin_to_anndata	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 829 144.5 829 163.5 1191 163.5 1191 144.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1010 151.5 0 346 68 -Convert Alevin sparse output to anndata.AnnData object, save as h5ad ",
		height=0.27778,
		label="Convert Alevin sparse output to anndata.AnnData object, save as h5ad",
		pos="1010,154",
		rects="829,144.5,1191,163.5",
		width=5.0278];
	assay -> alevin_to_anndata	[_draw_="c 7 -#000000 B 19 873.38 287.58 869.39 283.08 865.09 277.2 863 271 861.72 267.21 862.69 265.99 863 262 864.56 241.82 859.1 234.06 \
870 217 873.45 211.6 878.01 214.02 882 209 892.95 195.24 882.31 183.04 896 172 899.07 169.53 903.89 167.41 909.85 165.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 910.35 168.01 916.5 163.86 909.11 163.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 882.5 219.6 0 25 5 -assay ",
		label=assay,
		lp="882.5,221.5",
		pos="e,917.97,163.48 873.38,287.58 869.39,283.08 865.09,277.2 863,271 861.72,267.21 862.69,265.99 863,262 864.56,241.82 859.1,234.06 \
870,217 873.45,211.6 878.01,214.02 882,209 892.95,195.24 882.31,183.04 896,172 899.07,169.53 903.89,167.41 909.85,165.61"];
	assay -> salmon	[_draw_="c 7 -#000000 B 16 873.64 287.76 867.63 280.8 861.34 270.6 866 262 876.87 241.95 888.13 243.19 909 234 922.02 228.26 926.87 231.5 \
940 226 947.17 223 947.73 219.76 955 217 961.77 214.43 968.97 212.23 976.25 210.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 976.45 212.83 982.68 208.81 975.3 208.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 921.5 242.1 0 25 5 -assay ",
		label=assay,
		lp="921.5,244",
		pos="e,984.15,208.45 873.64,287.76 867.63,280.8 861.34,270.6 866,262 876.87,241.95 888.13,243.19 909,234 922.02,228.26 926.87,231.5 940,\
226 947.17,223 947.73,219.76 955,217 961.77,214.43 968.97,212.23 976.25,210.36"];
	assay -> "salmon-mouse"	[_draw_="c 7 -#000000 B 16 904.69 287.52 914.48 284.25 926.16 280.85 937 279 948.4 277.05 1136.34 278.66 1145 271 1157.48 259.96 1140.72 \
247.11 1151 234 1153.98 230.2 1186.43 218.56 1191 217 1197.66 214.73 1204.8 212.58 1211.82 210.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1212.38 213.01 1218.5 208.82 1211.1 208.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1163.5 242.1 0 25 5 -assay ",
		label=assay,
		lp="1163.5,244",
		pos="e,1220,208.43 904.69,287.52 914.48,284.25 926.16,280.85 937,279 948.4,277.05 1136.3,278.66 1145,271 1157.5,259.96 1140.7,247.11 \
1151,234 1154,230.2 1186.4,218.56 1191,217 1197.7,214.73 1204.8,212.58 1211.8,210.63"];
	organism -> alevin_to_anndata	[_draw_="c 7 -#000000 B 13 1131.2 287.66 1124.95 284.33 1117.34 280.84 1110 279 1099.11 276.27 915.78 279.1 908 271 880.89 242.8 909.03 212.9 \
940 189 951.78 179.91 966.38 172.35 979.2 166.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 980.03 168.99 985.51 164 978.11 164.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 928.5 219.6 0 39 8 -organism ",
		label=organism,
		lp="928.5,221.5",
		pos="e,986.9,163.4 1131.2,287.66 1125,284.33 1117.3,280.84 1110,279 1099.1,276.27 915.78,279.1 908,271 880.89,242.8 909.03,212.9 940,\
189 951.78,179.91 966.38,172.35 979.2,166.68"];
	organism -> salmon	[_draw_="c 7 -#000000 B 16 1140.47 287.74 1136.15 280.37 1129.11 269.62 1121 262 1116.05 257.36 1112.68 258.91 1108 254 1101 246.65 1103.68 \
241.64 1097 234 1092.82 229.22 1079.3 220.5 1074 217 1071.76 215.52 1069.39 214.03 1067 212.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1068.51 210.61 1061.24 209.13 1065.99 214.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1127.5 242.1 0 39 8 -organism ",
		label=organism,
		lp="1127.5,244",
		pos="e,1059.9,208.35 1140.5,287.74 1136.1,280.37 1129.1,269.62 1121,262 1116.1,257.36 1112.7,258.91 1108,254 1101,246.65 1103.7,241.64 \
1097,234 1092.8,229.22 1079.3,220.5 1074,217 1071.8,215.52 1069.4,214.03 1067,212.57"];
	organism -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 1161.6 287.58 1167.38 284.75 1173.93 281.64 1180 279 1208.39 266.67 1225.01 277.63 1245 254 1253.68 243.74 1256.15 \
228.49 1256.61 216.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1259.06 216.88 1256.62 209.88 1254.16 216.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1273.5 242.1 0 39 8 -organism ",
		label=organism,
		lp="1273.5,244",
		pos="e,1256.6,208.36 1161.6,287.58 1167.4,284.75 1173.9,281.64 1180,279 1208.4,266.67 1225,277.63 1245,254 1253.7,243.74 1256.1,228.49 \
1256.6,216.8"];
	metadata_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 716.03 287.53 704.02 278.55 688 263.18 688 245 688 245 688 245 688 153 688 138.47 699.57 128.5 712.79 121.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 713.49 124.22 718.86 119.11 711.47 119.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 715.5 197.1 0 55 12 -metadata_dir ",
		label=metadata_dir,
		lp="715.5,199",
		pos="e,720.24,118.49 716.03,287.53 704.02,278.55 688,263.18 688,245 688,245 688,245 688,153 688,138.47 699.57,128.5 712.79,121.85"];
	keep_all_barcodes -> salmon	[_draw_="c 7 -#000000 B 13 1523.01 287.88 1524.17 274.67 1524.32 248.51 1510 234 1483.86 207.51 1464.97 221.34 1428 217 1306.56 202.76 1275.08 \
215.86 1153 209 1152.91 209 1152.82 208.99 1152.74 208.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1153.08 206.55 1145.95 208.58 1152.79 211.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1558 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="1558,244",
		pos="e,1144.4,208.49 1523,287.88 1524.2,274.67 1524.3,248.51 1510,234 1483.9,207.51 1465,221.34 1428,217 1306.6,202.76 1275.1,215.86 \
1153,209 1152.9,209 1152.8,208.99 1152.7,208.99"];
	keep_all_barcodes -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1572.27 287.55 1612.97 278.5 1660.17 261.59 1638 234 1621.21 213.1 1474.36 205.04 1367.73 201.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1368.06 199.5 1361 201.75 1367.92 204.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1681 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="1681,244",
		pos="e,1359.5,201.7 1572.3,287.55 1613,278.5 1660.2,261.59 1638,234 1621.2,213.1 1474.4,205.04 1367.7,201.94"];
	img_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 784.07 287.59 769.57 279.05 751 264.34 751 245 751 245 751 245 751 153 751 144.31 751 134.63 751 126.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 753.45 126.76 751 119.76 748.55 126.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 766 197.1 0 30 7 -img_dir ",
		label=img_dir,
		lp="766,199",
		pos="e,751,118.24 784.07,287.59 769.57,279.05 751,264.34 751,245 751,245 751,245 751,153 751,144.31 751,134.63 751,126.65"];
	annotate_cells -> count_matrix_h5ad	[_draw_="c 7 -#000000 B 4 648.66 99.5 560.6 92.19 433.83 81.67 343.48 74.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.81 71.74 336.64 73.6 343.41 76.62 ",
		pos="e,335.13,73.478 648.66,99.505 560.6,92.194 433.83,81.671 343.48,74.171"];
	adjust_barcodes -> annotate_cells	[_draw_="c 7 -#000000 B 10 566.95 287.74 575.23 278.23 587 261.77 587 245 587 245 587 245 587 153 587 136.51 618.41 126.22 653.73 119.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 653.82 122.33 660.31 118.74 653 117.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 617.5 197.1 0 61 13 -metadata_json ",
		label=metadata_json,
		lp="617.5,199",
		pos="e,661.8,118.48 566.95,287.74 575.23,278.23 587,261.77 587,245 587,245 587,245 587,153 587,136.51 618.41,126.22 653.73,119.86"];
	adjust_barcodes -> trim_reads	[_draw_="c 7 -#000000 B 7 613.57 287.54 634.05 284.55 657.56 281.36 679 279 747.2 271.5 915.09 263.55 993.57 254.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 993.63 256.95 1000.29 253.68 993.04 252.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 930 264.6 0 52 13 -adj_fastq_dir ",
		label=adj_fastq_dir,
		lp="930,266.5",
		pos="e,1001.8,253.5 613.57,287.54 634.05,284.55 657.56,281.36 679,279 747.2,271.5 915.09,263.55 993.57,254.49"];
	trim_reads -> salmon	[_draw_="c 7 -#000000 B 7 1013.52 234.62 1009.79 232.39 1006.47 229.57 1004 226 1000.33 220.69 1002.53 216.22 1007.41 212.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1008.6 214.72 1013.48 209.14 1006.19 210.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1040.5 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="1040.5,221.5",
		pos="e,1014.8,208.4 1013.5,234.62 1009.8,232.39 1006.5,229.57 1004,226 1000.3,220.69 1002.5,216.22 1007.4,212.58"];
	trim_reads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 1062.92 234.67 1074.49 227.9 1090.12 219.14 1097 217 1103.36 215.02 1127.32 212.14 1154.78 209.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1154.78 211.76 1161.5 208.62 1154.29 206.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1133.5 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="1133.5,221.5",
		pos="e,1163,208.46 1062.9,234.67 1074.5,227.9 1090.1,219.14 1097,217 1103.4,215.02 1127.3,212.14 1154.8,209.3"];
	alevin_to_anndata -> genome_build_json	[_draw_="c 7 -#000000 B 4 1014.99 144.56 1023.71 129.81 1041.84 99.11 1052.86 80.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1054.88 81.86 1056.34 74.59 1050.66 79.37 ",
		pos="e,1057.1,73.284 1015,144.56 1023.7,129.81 1041.8,99.114 1052.9,80.46"];
	alevin_to_anndata -> raw_count_matrix	[_draw_="c 7 -#000000 B 7 997.96 144.56 980.08 132.46 945.06 110.39 912 99 878.3 87.39 840.19 79.71 805.72 74.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 806.27 72.25 799 73.68 805.58 77.1 ",
		pos="e,797.5,73.471 997.96,144.56 980.08,132.46 945.06,110.39 912,99 878.3,87.394 840.19,79.711 805.72,74.641"];
	alevin_to_anndata -> annotate_cells	[_draw_="c 7 -#000000 B 4 958.83 144.5 916.08 137.41 855.1 127.28 810.24 119.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 810.86 117.46 803.56 118.73 810.06 122.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 922 129.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="922,131.5",
		pos="e,802.06,118.48 958.83,144.5 916.08,137.41 855.1,127.28 810.24,119.84"];
	salmon -> salmon_output	[_draw_="c 7 -#000000 B 7 1129 189.53 1150.55 184.49 1172.77 176.53 1191 164 1221.48 143.04 1241.99 103.28 1251.65 81.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1253.79 82.27 1254.23 74.87 1249.27 80.39 ",
		pos="e,1254.8,73.473 1129,189.53 1150.6,184.49 1172.8,176.53 1191,164 1221.5,143.04 1242,103.28 1251.6,81.056"];
	salmon -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 1038.25 189.71 1033.6 184 1027.3 176.26 1021.83 169.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1024 168.32 1017.68 164.44 1020.2 171.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1050 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="1050,176.5",
		pos="e,1016.7,163.27 1038.3,189.71 1033.6,184 1027.3,176.26 1021.8,169.54"];
	"salmon-mouse" -> salmon_output	[_draw_="c 7 -#000000 B 4 1256.13 189.68 1256.45 168.13 1257.32 110.17 1257.75 81.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1260.2 81.87 1257.85 74.83 1255.3 81.79 ",
		pos="e,1257.9,73.317 1256.1,189.68 1256.4,168.13 1257.3,110.17 1257.8,81.509"];
	"salmon-mouse" -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 1207.4 189.5 1166.97 182.44 1109.36 172.37 1066.8 164.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.31 162.53 1059.99 163.74 1066.47 167.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1175 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="1175,176.5",
		pos="e,1058.5,163.48 1207.4,189.5 1167,182.44 1109.4,172.37 1066.8,164.93"];
}
