digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 410.5 1520.14 410.5 1520.14 0 ",
		bb="0,0,1520.1,410.5",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 124.14 279 124.14 353 1029.14 353 1029.14 279 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 174.14 341 0 84 15 -Workflow Inputs ",
			bb="124.14,279,1029.1,353",
			label="Workflow Inputs",
			lheight=0.15,
			lp="174.14,343.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		fastq_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 703.64 287.5 703.64 306.5 876.64 306.5 876.64 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 790.14 294.5 0 157 32 -Directory containing FASTQ files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing FASTQ files",
			pos="790.14,297",
			rects="703.64,287.5,876.64,306.5",
			width=2.4028];
		organism	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 132.14 287.5 132.14 306.5 194.14 306.5 194.14 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 163.14 294.5 0 46 8 -organism ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=organism,
			pos="163.14,297",
			rects="132.14,287.5,194.14,306.5",
			width=0.86111];
		assay	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 598.64 287.5 598.64 306.5 699.64 306.5 699.64 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 649.14 294.5 0 85 15 -scRNA-seq assay ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scRNA-seq assay",
			pos="649.14,297",
			rects="598.64,287.5,699.64,306.5",
			width=1.4028];
		keep_all_barcodes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 198.64 287.5 198.64 306.5 305.64 306.5 305.64 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252.14 294.5 0 91 17 -keep_all_barcodes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=keep_all_barcodes,
			pos="252.14,297",
			rects="198.64,287.5,305.64,306.5",
			width=1.4861];
		threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 310.14 287.5 310.14 306.5 474.14 306.5 474.14 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 392.14 294.5 0 148 28 -Number of threads for Salmon ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Number of threads for Salmon",
			pos="392.14,297",
			rects="310.14,287.5,474.14,306.5",
			width=2.2778];
		expected_cell_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 478.14 287.5 478.14 306.5 594.14 306.5 594.14 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 536.14 294.5 0 100 19 -expected_cell_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expected_cell_count,
			pos="536.14,297",
			rects="478.14,287.5,594.14,306.5",
			width=1.6111];
		metadata_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 881.14 287.5 881.14 306.5 963.14 306.5 963.14 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 922.14 294.5 0 66 12 -metadata_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=metadata_dir,
			pos="922.14,297",
			rects="881.14,287.5,963.14,306.5",
			width=1.1389];
		img_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 967.64 287.5 967.64 306.5 1020.64 306.5 1020.64 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 994.14 294.5 0 37 7 -img_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=img_dir,
			pos="994.14,297",
			rects="967.64,287.5,1020.6,306.5",
			width=0.73611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 172.14 8 172.14 82 1512.14 82 1512.14 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 226.14 15 0 92 16 -Workflow Outputs ",
			bb="172.14,8,1512.1,82",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="226.14,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		salmon_output	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 180.14 54.5 180.14 73.5 344.14 73.5 344.14 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 262.14 61.5 0 148 30 -Full output of `salmon alevin` ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Full output of `salmon alevin`",
			pos="262.14,64",
			rects="180.14,54.5,344.14,73.5",
			width=2.2778];
		raw_count_matrix	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 348.14 54.5 348.14 73.5 842.14 73.5 842.14 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 595.14 61.5 0 478 96 -Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts \
as separate columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts as separate columns",
			pos="595.14,64",
			rects="348.14,54.5,842.14,73.5",
			width=6.8611];
		count_matrix_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1070.14 54.5 1070.14 73.5 1504.14 73.5 1504.14 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1287.14 61.5 0 418 84 -Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced \
counts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced counts",
			pos="1287.1,64",
			rects="1070.1,54.5,1504.1,73.5",
			width=6.0278];
		genome_build_json	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 846.14 54.5 846.14 73.5 1066.14 73.5 1066.14 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 956.14 61.5 0 204 39 -Genome build information in JSON format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Genome build information in JSON format",
			pos="956.14,64",
			rects="846.14,54.5,1066.1,73.5",
			width=3.0556];
	}
	salmon	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 407.64 189.5 407.64 208.5 614.64 208.5 614.64 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 511.14 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="511.14,199",
		rects="407.64,189.5,614.64,208.5",
		width=2.875];
	fastq_dir -> salmon	[_draw_="c 7 -#000000 B 13 793.97 287.62 799.34 274.5 807.06 249.06 794.14 234 781.76 219.58 769.78 233.04 752.14 226 745.27 223.26 745.15 \
219.35 738.14 217 716.66 209.81 668.91 205.65 622.72 203.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 623.05 200.81 615.93 202.91 622.8 205.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 831.14 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="831.14,244",
		pos="e,614.42,202.84 793.97,287.62 799.34,274.5 807.06,249.06 794.14,234 781.76,219.58 769.78,233.04 752.14,226 745.27,223.26 745.15,\
219.35 738.14,217 716.66,209.81 668.91,205.65 622.72,203.25"];
	annotate_cells	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 813.64 99.5 813.64 118.5 1130.64 118.5 1130.64 99.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 972.14 106.5 0 301 63 -Assay-specific annotation of cell barcodes after quantification ",
		height=0.27778,
		label="Assay-specific annotation of cell barcodes after quantification",
		pos="972.14,109",
		rects="813.64,99.5,1130.6,118.5",
		width=4.4028];
	fastq_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 816.29 287.58 834.06 280.79 857.16 269.77 873.14 254 896.34 231.1 889.13 216.18 907.14 189 923.1 164.9 945.04 \
139.52 958.9 124.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 960.37 126.25 963.28 119.43 956.75 122.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 937.14 197.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="937.14,199",
		pos="e,964.31,118.31 816.29,287.58 834.06,280.79 857.16,269.77 873.14,254 896.34,231.1 889.13,216.18 907.14,189 923.1,164.9 945.04,139.52 \
958.9,124.22"];
	"salmon-mouse"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 196.64 189.5 196.64 208.5 403.64 208.5 403.64 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300.14 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="300.14,199",
		rects="196.64,189.5,403.64,208.5",
		width=2.875];
	fastq_dir -> "salmon-mouse"	[_draw_="c 7 -#000000 B 19 791.14 287.78 791.6 280.03 790.9 268.63 784.14 262 767.76 245.93 752.8 265.82 733.14 254 723.61 248.27 725.75 \
242.09 718.14 234 710.14 225.5 709.03 221.18 698.14 217 668.04 205.46 440.32 210.78 408.14 209 408.05 209 407.96 208.99 407.87 208.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 408.22 206.55 401.09 208.58 407.93 211.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 763.14 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="763.14,244",
		pos="e,399.57,208.5 791.14,287.78 791.6,280.03 790.9,268.63 784.14,262 767.76,245.93 752.8,265.82 733.14,254 723.61,248.27 725.75,242.09 \
718.14,234 710.14,225.5 709.03,221.18 698.14,217 668.04,205.46 440.32,210.78 408.14,209 408.05,209 407.96,208.99 407.87,208.99"];
	trim_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 620.64 234.5 620.64 253.5 715.64 253.5 715.64 234.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 668.14 241.5 0 79 16 -Trim FASTQ files ",
		height=0.27778,
		label="Trim FASTQ files",
		pos="668.14,244",
		rects="620.64,234.5,715.64,253.5",
		width=1.3194];
	fastq_dir -> trim_reads	[_draw_="c 7 -#000000 B 7 768.19 287.52 756.04 282.77 740.7 276.68 727.14 271 716.46 266.53 704.79 261.43 694.66 256.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 695.7 254.72 688.31 254.11 693.7 259.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 757.14 264.6 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="757.14,266.5",
		pos="e,686.92,253.49 768.19,287.52 756.04,282.77 740.7,276.68 727.14,271 716.46,266.53 704.79,261.43 694.66,256.94"];
	adjust_barcodes	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1037.64 287.5 1037.64 306.5 1262.64 306.5 1262.64 287.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1150.14 294.5 0 209 42 -Assay-specific adjustment of cell barcodes ",
		height=0.27778,
		label="Assay-specific adjustment of cell barcodes",
		pos="1150.1,297",
		rects="1037.6,287.5,1262.6,306.5",
		width=3.125];
	fastq_dir -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 800.96 306.35 817.12 319.61 849.1 343.29 881.14 352.25 944.91 370.09 965.45 366.43 1030.14 352.25 1066.37 344.31 \
1104.71 324.35 1128.04 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.29 312.84 1134.05 307.15 1126.78 308.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 957.14 363.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="957.14,365.5",
		pos="e,1135.3,306.38 800.96,306.35 817.12,319.61 849.1,343.29 881.14,352.25 944.91,370.09 965.45,366.43 1030.1,352.25 1066.4,344.31 1104.7,\
324.35 1128,310.73"];
	alevin_to_anndata	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 414.14 144.5 414.14 163.5 776.14 163.5 776.14 144.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 595.14 151.5 0 346 68 -Convert Alevin sparse output to anndata.AnnData object, save as h5ad ",
		height=0.27778,
		label="Convert Alevin sparse output to anndata.AnnData object, save as h5ad",
		pos="595.14,154",
		rects="414.14,144.5,776.14,163.5",
		width=5.0278];
	organism -> alevin_to_anndata	[_draw_="c 7 -#000000 B 10 132.25 296.05 105.39 294.71 66.46 289.36 38.14 271 14.72 255.83 -12.08 238.13 6.14 217 32.24 186.73 243.95 170.35 \
406.15 162.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.94 164.63 412.81 161.83 405.7 159.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 25.64 219.6 0 39 8 -organism ",
		label=organism,
		lp="25.635,221.5",
		pos="e,414.32,161.76 132.25,296.05 105.39,294.71 66.458,289.36 38.135,271 14.724,255.83 -12.08,238.13 6.1355,217 32.235,186.73 243.95,\
170.35 406.15,162.17"];
	organism -> salmon	[_draw_="c 7 -#000000 B 7 161.43 287.86 159.19 274.62 157.01 248.42 171.14 234 188.14 216.63 353.85 211.61 402.41 209.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 402.55 211.45 409.39 208.58 402.25 206.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190.64 242.1 0 39 8 -organism ",
		label=organism,
		lp="190.64,244",
		pos="e,410.9,208.48 161.43,287.86 159.19,274.62 157.01,248.42 171.14,234 188.14,216.63 353.85,211.61 402.41,209.01"];
	organism -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 132.46 292.57 87.1 286.23 10.24 269.9 37.14 234 53.24 212.5 68.73 221.91 95.14 217 125.27 211.39 158.24 207.64 \
188.76 205.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 188.59 207.59 195.37 204.59 188.2 202.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 56.64 242.1 0 39 8 -organism ",
		label=organism,
		lp="56.635,244",
		pos="e,196.88,204.47 132.46,292.57 87.101,286.23 10.244,269.9 37.135,234 53.239,212.5 68.726,221.91 95.135,217 125.27,211.39 158.24,207.64 \
188.76,205.12"];
	assay -> alevin_to_anndata	[_draw_="c 7 -#000000 B 10 664.14 287.62 682.99 276.95 713.23 259.26 716.14 254 720.44 246.22 719.65 242.16 716.14 234 701.09 199.1 661.49 \
177.85 631.66 166.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 632.76 164.1 625.34 163.97 631.06 168.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 723.64 219.6 0 25 5 -assay ",
		label=assay,
		lp="723.64,221.5",
		pos="e,623.92,163.44 664.14,287.62 682.99,276.95 713.23,259.26 716.14,254 720.44,246.22 719.65,242.16 716.14,234 701.09,199.1 661.49,\
177.85 631.66,166.3"];
	assay -> salmon	[_draw_="c 7 -#000000 B 10 632.71 287.53 620.27 280.28 603.73 268.69 594.14 254 584.88 239.83 597.18 228.89 585.14 217 583.58 215.46 581.91 \
214.05 580.15 212.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.51 210.71 574.26 209.13 578.93 214.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 606.64 242.1 0 25 5 -assay ",
		label=assay,
		lp="606.64,244",
		pos="e,572.97,208.33 632.71,287.53 620.27,280.28 603.73,268.69 594.14,254 584.88,239.83 597.18,228.89 585.14,217 583.58,215.46 581.91,\
214.05 580.15,212.76"];
	assay -> annotate_cells	[_draw_="c 7 -#000000 B 16 672.98 287.58 682.56 284.47 693.77 281.18 704.14 279 738.92 271.67 836.63 278.76 862.14 254 872.43 244.01 869.14 \
236.84 869.14 222.5 869.14 222.5 869.14 222.5 869.14 153 869.14 138.04 878.5 128.19 891.59 121.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 892.34 124.08 897.81 119.08 890.41 119.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 881.64 197.1 0 25 5 -assay ",
		label=assay,
		lp="881.64,199",
		pos="e,899.2,118.48 672.98,287.58 682.56,284.47 693.77,281.18 704.14,279 738.92,271.67 836.63,278.76 862.14,254 872.43,244.01 869.14,\
236.84 869.14,222.5 869.14,222.5 869.14,222.5 869.14,153 869.14,138.04 878.5,128.19 891.59,121.73"];
	assay -> "salmon-mouse"	[_draw_="c 7 -#000000 B 13 627.58 287.52 606.79 279.69 574.28 268.34 545.14 262 514.11 255.25 501.7 269.77 474.14 254 464.49 248.48 468.5 \
239.99 459.14 234 442 223.04 421.91 215.56 401.88 210.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 402.47 208.08 395.09 208.84 401.33 212.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486.64 242.1 0 25 5 -assay ",
		label=assay,
		lp="486.64,244",
		pos="e,393.62,208.49 627.58,287.52 606.79,279.69 574.28,268.34 545.14,262 514.11,255.25 501.7,269.77 474.14,254 464.49,248.48 468.5,239.99 \
459.14,234 442,223.04 421.91,215.56 401.88,210.46"];
	assay -> trim_reads	[_draw_="c 7 -#000000 B 4 652.27 287.58 654.96 280.37 658.89 269.81 662.17 261 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 664.38 262.1 664.53 254.68 659.79 260.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 673.64 264.6 0 25 5 -assay ",
		label=assay,
		lp="673.64,266.5",
		pos="e,665.06,253.26 652.27,287.58 654.96,280.37 658.89,269.81 662.17,261"];
	assay -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 654.85 306.25 663.59 319.38 681.64 342.9 704.14 352.25 771.03 380.05 959.37 367.76 1030.14 352.25 1066.37 344.31 \
1104.71 324.35 1128.04 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.29 312.84 1134.05 307.15 1126.78 308.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 789.14 363.6 0 25 5 -assay ",
		label=assay,
		lp="789.14,365.5",
		pos="e,1135.3,306.38 654.85,306.25 663.59,319.38 681.64,342.9 704.14,352.25 771.03,380.05 959.37,367.76 1030.1,352.25 1066.4,344.31 1104.7,\
324.35 1128,310.73"];
	keep_all_barcodes -> salmon	[_draw_="c 7 -#000000 B 7 250.7 287.77 248.29 272.76 244.32 241.77 251.14 234 256.77 227.59 345.03 217.02 417.17 209.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.23 211.82 423.93 208.65 416.71 206.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 289.14 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="289.14,244",
		pos="e,425.44,208.49 250.7,287.77 248.29,272.76 244.32,241.77 251.14,234 256.77,227.59 345.03,217.02 417.17,209.37"];
	keep_all_barcodes -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 224.5 287.52 214.92 284.68 204.09 281.59 194.14 279 143.01 265.71 49.81 274.15 84.14 234 98.3 217.43 143.23 208.88 \
188.47 204.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 188.66 206.94 195.41 203.86 188.21 202.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122.14 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="122.14,244",
		pos="e,196.92,203.73 224.5,287.52 214.92,284.68 204.09,281.59 194.14,279 143.01,265.71 49.811,274.15 84.135,234 98.301,217.43 143.23,\
208.88 188.47,204.5"];
	threads -> salmon	[_draw_="c 7 -#000000 B 10 397.68 287.74 403.27 279.34 412.04 265.92 419.14 254 424.33 245.28 422.59 240.79 430.14 234 441.32 223.94 455.91 \
216.58 469.62 211.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 470.37 213.67 476.14 209.01 468.72 209.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 446.14 242.1 0 32 7 -threads ",
		label=threads,
		lp="446.14,244",
		pos="e,477.56,208.49 397.68,287.74 403.27,279.34 412.04,265.92 419.14,254 424.33,245.28 422.59,240.79 430.14,234 441.32,223.94 455.91,\
216.58 469.62,211.34"];
	threads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 351.04 287.58 300.1 276.96 219.41 259.4 215.14 254 199.68 234.44 227.81 219.92 255.77 210.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 256.19 213.32 262.17 208.93 254.76 208.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 231.14 242.1 0 32 7 -threads ",
		label=threads,
		lp="231.14,244",
		pos="e,263.62,208.49 351.04,287.58 300.1,276.96 219.41,259.4 215.14,254 199.68,234.44 227.81,219.92 255.77,210.89"];
	threads -> trim_reads	[_draw_="c 7 -#000000 B 7 434.1 287.55 448.09 284.77 463.78 281.7 478.14 279 503.3 274.26 566.13 263.06 612.69 254.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 612.93 257.25 619.4 253.62 612.08 252.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 584.14 264.6 0 32 7 -threads ",
		label=threads,
		lp="584.14,266.5",
		pos="e,620.89,253.35 434.1,287.55 448.09,284.77 463.78,281.7 478.14,279 503.3,274.26 566.13,263.06 612.69,254.81"];
	expected_cell_count -> salmon	[_draw_="c 7 -#000000 B 7 526.82 287.74 518.8 279.95 507.8 267.5 503.14 254 498.88 241.7 501.49 227.06 504.83 216.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 507.08 217.12 507.05 209.71 502.45 215.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 544.64 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="544.64,244",
		pos="e,507.54,208.27 526.82,287.74 518.8,279.95 507.8,267.5 503.14,254 498.88,241.7 501.49,227.06 504.83,216.13"];
	expected_cell_count -> "salmon-mouse"	[_draw_="c 7 -#000000 B 13 507.25 287.5 496.86 284.6 485.02 281.47 474.14 279 412.92 265.13 382.9 294.73 335.14 254 327.97 247.89 332.76 \
242.21 328.14 234 324.25 227.1 318.93 220.23 313.97 214.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 315.94 213 309.44 209.44 312.3 216.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 376.64 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="376.64,244",
		pos="e,308.42,208.32 507.25,287.5 496.86,284.6 485.02,281.47 474.14,279 412.92,265.13 382.9,294.73 335.14,254 327.97,247.89 332.76,242.21 \
328.14,234 324.25,227.1 318.93,220.23 313.97,214.48"];
	metadata_dir -> annotate_cells	[_draw_="c 7 -#000000 B 13 943.84 287.57 951.55 283.59 959.67 278.13 965.14 271 972.41 261.5 972.14 256.97 972.14 245 972.14 245 972.14 245 \
972.14 153 972.14 144.31 972.14 134.63 972.14 126.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 974.59 126.76 972.14 119.76 969.69 126.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 999.64 197.1 0 55 12 -metadata_dir ",
		label=metadata_dir,
		lp="999.64,199",
		pos="e,972.14,118.24 943.84,287.57 951.55,283.59 959.67,278.13 965.14,271 972.41,261.5 972.14,256.97 972.14,245 972.14,245 972.14,245 \
972.14,153 972.14,144.31 972.14,134.63 972.14,126.65"];
	img_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 1007.11 287.53 1019.12 278.55 1035.14 263.18 1035.14 245 1035.14 245 1035.14 245 1035.14 153 1035.14 138.47 1023.57 \
128.5 1010.35 121.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1011.66 119.75 1004.28 119.11 1009.65 124.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1050.14 197.1 0 30 7 -img_dir ",
		label=img_dir,
		lp="1050.1,199",
		pos="e,1002.9,118.49 1007.1,287.53 1019.1,278.55 1035.1,263.18 1035.1,245 1035.1,245 1035.1,245 1035.1,153 1035.1,138.47 1023.6,128.5 \
1010.3,121.85"];
	alevin_to_anndata -> raw_count_matrix	[_draw_="c 7 -#000000 B 4 595.14 144.56 595.14 130.14 595.14 100.48 595.14 81.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 597.59 81.8 595.14 74.8 592.69 81.8 ",
		pos="e,595.14,73.284 595.14,144.56 595.14,130.14 595.14,100.48 595.14,81.727"];
	alevin_to_anndata -> genome_build_json	[_draw_="c 7 -#000000 B 7 628.56 144.55 671.15 133.81 747.05 114.78 812.14 99 845.42 90.93 883.1 82.04 911.56 75.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 911.98 77.8 918.24 73.82 910.86 73.03 ",
		pos="e,919.71,73.473 628.56,144.55 671.15,133.81 747.05,114.78 812.14,99 845.42,90.929 883.1,82.042 911.56,75.378"];
	alevin_to_anndata -> annotate_cells	[_draw_="c 7 -#000000 B 4 669.62 144.5 733 137.28 823.93 126.9 889.53 119.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 889.63 121.88 896.3 118.65 889.07 117.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 836.14 129.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="836.14,131.5",
		pos="e,897.81,118.48 669.62,144.5 733,137.28 823.93,126.9 889.53,119.42"];
	salmon -> salmon_output	[_draw_="c 7 -#000000 B 7 480 189.52 460.09 183.56 433.99 174.75 412.14 164 360.99 138.84 306.46 99.18 279.42 78.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.09 76.72 274.05 74.39 278.1 80.6 ",
		pos="e,272.85,73.463 480,189.52 460.09,183.56 433.99,174.75 412.14,164 360.99,138.84 306.46,99.179 279.42,78.522"];
	salmon -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 527.73 189.5 540.16 183.14 557.33 174.35 571.24 167.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 572.11 169.54 577.23 164.17 569.88 165.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 580.14 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="580.14,176.5",
		pos="e,578.57,163.48 527.73,189.5 540.16,183.14 557.33,174.35 571.24,167.23"];
	annotate_cells -> count_matrix_h5ad	[_draw_="c 7 -#000000 B 4 1034.37 99.5 1086.9 92.33 1162.07 82.07 1216.77 74.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1216.93 77.06 1223.53 73.68 1216.26 72.2 ",
		pos="e,1225,73.478 1034.4,99.505 1086.9,92.334 1162.1,82.073 1216.8,74.605"];
	"salmon-mouse" -> salmon_output	[_draw_="c 7 -#000000 B 4 297.76 189.68 291.57 168.03 274.9 109.67 266.75 81.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 269.21 80.83 264.93 74.77 264.49 82.18 ",
		pos="e,264.51,73.317 297.76,189.68 291.57,168.03 274.9,109.67 266.75,81.139"];
	"salmon-mouse" -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 358.42 189.5 407.41 182.36 477.43 172.16 528.61 164.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.9 167.13 535.48 163.7 528.2 162.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 493.14 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="493.14,176.5",
		pos="e,536.97,163.48 358.42,189.5 407.41,182.36 477.43,172.16 528.61,164.7"];
	trim_reads -> salmon	[_draw_="c 7 -#000000 B 7 647.3 234.54 633.06 228.99 613.67 221.89 596.14 217 587.17 214.5 577.57 212.21 568.17 210.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 568.81 207.82 561.46 208.78 567.81 212.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 660.64 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="660.64,221.5",
		pos="e,559.98,208.47 647.3,234.54 633.06,228.99 613.67,221.89 596.14,217 587.17,214.5 577.57,212.21 568.17,210.19"];
	trim_reads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 620.92 234.51 619.65 234.33 618.38 234.16 617.14 234 575.12 228.53 564.29 230.24 522.14 226 521.22 225.91 443.94 \
216.85 380.82 209.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.15 207.03 373.91 208.65 380.58 211.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 558.64 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="558.64,221.5",
		pos="e,372.41,208.47 620.92,234.51 619.65,234.33 618.38,234.16 617.14,234 575.12,228.53 564.29,230.24 522.14,226 521.22,225.91 443.94,\
216.85 380.82,209.46"];
	adjust_barcodes -> annotate_cells	[_draw_="c 7 -#000000 B 10 1138.22 287.72 1126.75 278.68 1111.14 263.06 1111.14 245 1111.14 245 1111.14 245 1111.14 153 1111.14 137.33 1078.49 \
126.75 1044.85 120.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1045.57 117.65 1038.24 118.74 1044.65 122.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1141.64 197.1 0 61 13 -metadata_json ",
		label=metadata_json,
		lp="1141.6,199",
		pos="e,1036.8,118.46 1138.2,287.72 1126.8,278.68 1111.1,263.06 1111.1,245 1111.1,245 1111.1,245 1111.1,153 1111.1,137.33 1078.5,126.75 \
1044.8,120.01"];
	adjust_barcodes -> trim_reads	[_draw_="c 7 -#000000 B 10 1094.96 287.5 1074.62 284.55 1051.36 281.38 1030.14 279 896.74 264.02 862.49 269.36 729.14 254 727.32 253.79 725.48 \
253.57 723.62 253.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 724.14 250.94 716.89 252.47 723.51 255.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 968.14 264.6 0 52 13 -adj_fastq_dir ",
		label=adj_fastq_dir,
		lp="968.14,266.5",
		pos="e,715.38,252.27 1095,287.5 1074.6,284.55 1051.4,281.38 1030.1,279 896.74,264.02 862.49,269.36 729.14,254 727.32,253.79 725.48,253.57 \
723.62,253.34"];
}