digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 5847 323 5847 0 ",
		bb="0,0,5847,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 2048 260 2048 315 3558 315 3558 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 2098 303 0 84 15 -Workflow Inputs ",
			bb="2048,260,3558,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="2098,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		assay	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3103.5 268.5 3103.5 287.5 3204.5 287.5 3204.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3154 275.5 0 85 15 -scRNA-seq assay ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scRNA-seq assay",
			pos="3154,278",
			rects="3103.5,268.5,3204.5,287.5",
			width=1.4028];
		barcode_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2729 268.5 2729 287.5 2805 287.5 2805 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2767 275.5 0 60 12 -barcode_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=barcode_file,
			pos="2767,278",
			rects="2729,268.5,2805,287.5",
			width=1.0556];
		img_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2809 268.5 2809 287.5 3099 287.5 3099 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2954 275.5 0 274 55 -Directory containing TIFF image data (for Visium assay) ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing TIFF image data (for Visium assay)",
			pos="2954,278",
			rects="2809,268.5,3099,287.5",
			width=4.0278];
		fastq_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3208.5 268.5 3208.5 287.5 3381.5 287.5 3381.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3295 275.5 0 157 32 -Directory containing FASTQ files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing FASTQ files",
			pos="3295,278",
			rects="3208.5,268.5,3381.5,287.5",
			width=2.4028];
		expected_cell_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2122 268.5 2122 287.5 2238 287.5 2238 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2180 275.5 0 100 19 -expected_cell_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expected_cell_count,
			pos="2180,278",
			rects="2122,268.5,2238,287.5",
			width=1.6111];
		keep_all_barcodes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2617.5 268.5 2617.5 287.5 2724.5 287.5 2724.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2671 275.5 0 91 17 -keep_all_barcodes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=keep_all_barcodes,
			pos="2671,278",
			rects="2617.5,268.5,2724.5,287.5",
			width=1.4861];
		threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3386 268.5 3386 287.5 3550 287.5 3550 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3468 275.5 0 148 28 -Number of threads for Salmon ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Number of threads for Salmon",
			pos="3468,278",
			rects="3386,268.5,3550,287.5",
			width=2.2778];
		metadata_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2242.5 268.5 2242.5 287.5 2613.5 287.5 2613.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2428 275.5 0 355 74 -Directory containing metadata, including gpr slide file (for Visium assay) ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing metadata, including gpr slide file (for Visium assay)",
			pos="2428,278",
			rects="2242.5,268.5,2613.5,287.5",
			width=5.1528];
		organism	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2056 268.5 2056 287.5 2118 287.5 2118 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2087 275.5 0 46 8 -organism ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=organism,
			pos="2087,278",
			rects="2056,268.5,2118,287.5",
			width=0.86111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 5839 63 5839 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,5839,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		deepscence_binary_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2002 35.5 2002 54.5 2262 54.5 2262 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2132 42.5 0 244 47 -Umap with coloring by DeepScence binary results ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Umap with coloring by DeepScence binary results",
			pos="2132,45",
			rects="2002,35.5,2262,54.5",
			width=3.6111];
		squidpy_annotated_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5225.5 35.5 5225.5 54.5 5364.5 54.5 5364.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5295 42.5 0 123 22 -squidpy_annotated_h5ad ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=squidpy_annotated_h5ad,
			pos="5295,45",
			rects="5225.5,35.5,5364.5,54.5",
			width=1.9306];
		squidpy_spatial_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5368.5 35.5 5368.5 54.5 5485.5 54.5 5485.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5427 42.5 0 101 20 -squidpy_spatial_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=squidpy_spatial_plot,
			pos="5427,45",
			rects="5368.5,35.5,5485.5,54.5",
			width=1.625];
		scvelo_embedding_grid_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3721.5 35.5 3721.5 54.5 3912.5 54.5 3912.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3817 42.5 0 175 35 -scVelo velocity embedding grid plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scVelo velocity embedding grid plot",
			pos="3817,45",
			rects="3721.5,35.5,3912.5,54.5",
			width=2.6528];
		filtered_data_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2266.5 35.5 2266.5 54.5 2429.5 54.5 2429.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2348 42.5 0 147 33 -Full data set of filtered results ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Full data set of filtered results",
			pos="2348,45",
			rects="2266.5,35.5,2429.5,54.5",
			width=2.2639];
		spatial_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2433.5 35.5 2433.5 54.5 2672.5 54.5 2672.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2553 42.5 0 223 46 -Slide-seq bead plot, colored by Leiden cluster ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Slide-seq bead plot, colored by Leiden cluster",
			pos="2553,45",
			rects="2433.5,35.5,2672.5,54.5",
			width=3.3194];
		neighborhood_enrichment_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4372 35.5 4372 54.5 4540 54.5 4540 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4456 42.5 0 152 28 -neighborhood_enrichment_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=neighborhood_enrichment_plot,
			pos="4456,45",
			rects="4372,35.5,4540,54.5",
			width=2.3333];
		centrality_scores_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4544 35.5 4544 54.5 4668 54.5 4668 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4606 42.5 0 108 22 -centrality_scores_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=centrality_scores_plot,
			pos="4606,45",
			rects="4544,35.5,4668,54.5",
			width=1.7222];
		genome_build_json	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1550 35.5 1550 54.5 1770 54.5 1770 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1660 42.5 0 204 39 -Genome build information in JSON format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Genome build information in JSON format",
			pos="1660,45",
			rects="1550,35.5,1770,54.5",
			width=3.0556];
		co_occurrence_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4672 35.5 4672 54.5 4782 54.5 4782 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4727 42.5 0 94 18 -co_occurrence_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=co_occurrence_plot,
			pos="4727,45",
			rects="4672,35.5,4782,54.5",
			width=1.5278];
		marker_gene_plot_t_test	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2676.5 35.5 2676.5 54.5 2829.5 54.5 2829.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2753 42.5 0 137 28 -Cluster marker genes, t-test ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Cluster marker genes, t-test",
			pos="2753,45",
			rects="2676.5,35.5,2829.5,54.5",
			width=2.125];
		umap_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2834 35.5 2834 54.5 3026 54.5 3026 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2930 42.5 0 176 34 -UMAP dimensionality reduction plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="UMAP dimensionality reduction plot",
			pos="2930,45",
			rects="2834,35.5,3026,54.5",
			width=2.6667];
		fastqc_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5489.5 35.5 5489.5 54.5 5830.5 54.5 5830.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5660 42.5 0 325 69 -Directory of FastQC output files, mirroring input directory structure ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory of FastQC output files, mirroring input directory structure",
			pos="5660,45",
			rects="5489.5,35.5,5830.5,54.5",
			width=4.7361];
		umap_density_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3030 35.5 3030 54.5 3338 54.5 3338 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3184 42.5 0 292 59 -UMAP dimensionality reduction plot, colored by cell density ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="UMAP dimensionality reduction plot, colored by cell density",
			pos="3184,45",
			rects="3030,35.5,3338,54.5",
			width=4.2778];
		count_matrix_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 514 35.5 514 54.5 1046 54.5 1046 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 780 42.5 0 516 103 -Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced \
counts, scenesence scores ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced counts, scenesence scores",
			pos="780,45",
			rects="514,35.5,1046,54.5",
			width=7.3889];
		marker_gene_plot_logreg	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3342 35.5 3342 54.5 3540 54.5 3540 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3441 42.5 0 182 35 -Cluster marker genes, logreg method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Cluster marker genes, logreg method",
			pos="3441,45",
			rects="3342,35.5,3540,54.5",
			width=2.75];
		salmon_output	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4204 35.5 4204 54.5 4368 54.5 4368 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4286 42.5 0 148 30 -Full output of `salmon alevin` ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Full output of `salmon alevin`",
			pos="4286,45",
			rects="4204,35.5,4368,54.5",
			width=2.2778];
		interaction_matrix_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4786.5 35.5 4786.5 54.5 4917.5 54.5 4917.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4852 42.5 0 115 23 -interaction_matrix_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interaction_matrix_plot,
			pos="4852,45",
			rects="4786.5,35.5,4917.5,54.5",
			width=1.8194];
		ripley_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4922 35.5 4922 54.5 4990 54.5 4990 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4956 42.5 0 52 11 -ripley_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ripley_plot,
			pos="4956,45",
			rects="4922,35.5,4990,54.5",
			width=0.94444];
		scanpy_qc_results	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1152.5 35.5 1152.5 54.5 1345.5 54.5 1345.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1249 42.5 0 177 35 -Quality control metrics from Scanpy ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Quality control metrics from Scanpy",
			pos="1249,45",
			rects="1152.5,35.5,1345.5,54.5",
			width=2.6806];
		dispersion_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3544.5 35.5 3544.5 54.5 3717.5 54.5 3717.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3631 42.5 0 157 31 -Gene expression dispersion plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Gene expression dispersion plot",
			pos="3631,45",
			rects="3544.5,35.5,3717.5,54.5",
			width=2.4028];
		qc_report	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1350 35.5 1350 54.5 1546 54.5 1546 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1448 42.5 0 180 37 -Quality control report in JSON format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Quality control report in JSON format",
			pos="1448,45",
			rects="1350,35.5,1546,54.5",
			width=2.7222];
		scvelo_annotated_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3916.5 35.5 3916.5 54.5 4199.5 54.5 4199.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4058 42.5 0 267 55 -scVelo-annotated h5ad file, including cell RNA velocity ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scVelo-annotated h5ad file, including cell RNA velocity",
			pos="4058,45",
			rects="3916.5,35.5,4199.5,54.5",
			width=3.9306];
		deepscence_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1050 35.5 1050 54.5 1148 54.5 1148 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1099 42.5 0 82 15 -deepscence_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=deepscence_plot,
			pos="1099,45",
			rects="1050,35.5,1148,54.5",
			width=1.3611];
		deepscence_continuous_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1774 35.5 1774 54.5 1998 54.5 1998 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1886 42.5 0 208 39 -Umap with coloring by DeepScence scores ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Umap with coloring by DeepScence scores",
			pos="1886,45",
			rects="1774,35.5,1998,54.5",
			width=3.1111];
		sdata_zarr	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4994.5 35.5 4994.5 54.5 5221.5 54.5 5221.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5108 42.5 0 211 44 -SpatialData object serialized in zarr format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="SpatialData object serialized in zarr format",
			pos="5108,45",
			rects="4994.5,35.5,5221.5,54.5",
			width=3.1528];
		raw_count_matrix	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 510 54.5 510 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 42.5 0 478 96 -Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts \
as separate columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts as separate columns",
			pos="263,45",
			rects="16,35.5,510,54.5",
			width=6.8611];
	}
	salmon_quantification	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2645.5 215.5 2645.5 234.5 2770.5 234.5 2770.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2708 222.5 0 109 21 -salmon_quantification ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Salmon quantification, FASTQ -> H5AD count matrix",
		pos="2708,225",
		rects="2645.5,215.5,2770.5,234.5",
		width=1.7361];
	assay -> salmon_quantification	[_draw_="c 7 -#000000 B 13 3131.73 268.54 3122.12 265.27 3110.65 261.87 3100 260 3016.31 245.34 2992.56 267.36 2909 252 2896.56 249.71 2894.37 \
245.63 2882 243 2848.34 235.84 2810.37 231.69 2778.51 229.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2778.79 226.85 2771.63 228.79 2778.44 231.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2921.5 245.6 0 25 5 -assay ",
		label=assay,
		lp="2921.5,247.5",
		pos="e,2770.1,228.68 3131.7,268.54 3122.1,265.27 3110.6,261.87 3100,260 3016.3,245.34 2992.6,267.36 2909,252 2896.6,249.71 2894.4,245.63 \
2882,243 2848.3,235.84 2810.4,231.69 2778.5,229.28"];
	compute_qc_results	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2530 80.5 2530 99.5 2648 99.5 2648 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2589 87.5 0 102 18 -Compute QC metrics ",
		height=0.27778,
		label="Compute QC metrics",
		pos="2589,90",
		rects="2530,80.5,2648,99.5",
		width=1.6389];
	assay -> compute_qc_results	[_draw_="c 7 -#000000 B 13 3131.46 268.53 3121.89 265.3 3110.54 261.93 3100 260 3039.13 248.85 3021.32 265.81 2961 252 2922.78 243.25 2670.24 \
134.18 2635 117 2626.71 112.96 2617.84 108.09 2610.12 103.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2611.44 101.59 2604.16 100.18 2608.98 105.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2813.5 178.1 0 25 5 -assay ",
		label=assay,
		lp="2813.5,180",
		pos="e,2602.9,99.417 3131.5,268.53 3121.9,265.3 3110.5,261.93 3100,260 3039.1,248.85 3021.3,265.81 2961,252 2922.8,243.25 2670.2,134.18 \
2635,117 2626.7,112.96 2617.8,108.09 2610.1,103.65"];
	scvelo_analysis	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2888 80.5 2888 99.5 3064 99.5 3064 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2976 87.5 0 160 32 -RNA velocity analysis via scVelo ",
		height=0.27778,
		label="RNA velocity analysis via scVelo",
		pos="2976,90",
		rects="2888,80.5,3064,99.5",
		width=2.4444];
	assay -> scvelo_analysis	[_draw_="c 7 -#000000 B 10 3129.88 268.59 3103.22 258.54 3064 241.18 3064 226 3064 226 3064 226 3064 156.5 3064 129.52 3037.05 112.34 3012.98 \
102.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3014.13 100.2 3006.71 99.94 3012.35 104.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3090 178.1 0 52 10 -assay_name ",
		label=assay_name,
		lp="3090,180",
		pos="e,3005.3,99.395 3129.9,268.59 3103.2,258.54 3064,241.18 3064,226 3064,226 3064,226 3064,156.5 3064,129.52 3037.1,112.34 3013,102.38"];
	scanpy_analysis	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2742 125.5 2742 144.5 2954 144.5 2954 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2848 132.5 0 196 39 -Dimensionality reduction and clustering ",
		height=0.27778,
		label="Dimensionality reduction and clustering",
		pos="2848,135",
		rects="2742,125.5,2954,144.5",
		width=2.9444];
	assay -> scanpy_analysis	[_draw_="c 7 -#000000 B 13 3131.45 268.56 3121.89 265.33 3110.53 261.96 3100 260 3072.2 254.83 2997.01 266.93 2973 252 2949.5 237.39 2960.95 \
218.16 2942 198 2922.05 176.78 2893.49 159.26 2873.09 148.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2874.39 146.24 2867.05 145.16 2872.12 150.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2960.5 200.6 0 25 5 -assay ",
		label=assay,
		lp="2960.5,202.5",
		pos="e,2865.7,144.46 3131.5,268.56 3121.9,265.33 3110.5,261.96 3100,260 3072.2,254.83 2997,266.93 2973,252 2949.5,237.39 2961,218.16 \
2942,198 2922.1,176.78 2893.5,159.26 2873.1,148.32"];
	squidpy_analysis	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4621 80.5 4621 99.5 4833 99.5 4833 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4727 87.5 0 196 39 -Dimensionality reduction and clustering ",
		height=0.27778,
		label="Dimensionality reduction and clustering",
		pos="4727,90",
		rects="4621,80.5,4833,99.5",
		width=2.9444];
	assay -> squidpy_analysis	[_draw_="c 7 -#000000 B 10 3178.56 268.66 3196.61 260.79 3218 247.03 3218 226 3218 226 3218 226 3218 134 3218 99.14 4261.02 92.52 4612.76 \
91.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4612.69 93.73 4619.68 91.26 4612.67 88.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3230.5 178.1 0 25 5 -assay ",
		label=assay,
		lp="3230.5,180",
		pos="e,4621.2,91.253 3178.6,268.66 3196.6,260.79 3218,247.03 3218,226 3218,226 3218,226 3218,134 3218,99.137 4261,92.522 4612.8,91.282"];
	barcode_file -> salmon_quantification	[_draw_="c 7 -#000000 B 7 2766.09 268.66 2764.83 261.04 2761.88 249.93 2755 243 2753.34 241.33 2751.5 239.81 2749.54 238.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2751.09 236.52 2743.8 235.13 2748.63 240.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2786.5 245.6 0 51 12 -barcode_file ",
		label=barcode_file,
		lp="2786.5,247.5",
		pos="e,2742.5,234.37 2766.1,268.66 2764.8,261.04 2761.9,249.93 2755,243 2753.3,241.33 2751.5,239.81 2749.5,238.45"];
	img_dir -> salmon_quantification	[_draw_="c 7 -#000000 B 7 2921.95 268.54 2893.48 261.19 2850.65 250.58 2813 243 2800.26 240.44 2786.58 238 2773.45 235.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2774.16 233.44 2766.86 234.72 2773.37 238.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2866 245.6 0 30 7 -img_dir ",
		label=img_dir,
		lp="2866,247.5",
		pos="e,2765.4,234.48 2922,268.54 2893.5,261.19 2850.6,250.58 2813,243 2800.3,240.44 2786.6,238 2773.5,235.81"];
	img_dir -> squidpy_analysis	[_draw_="c 7 -#000000 B 13 2952.16 268.65 2949.23 253.08 2945.33 219.29 2961 198 2970.68 184.84 3013.46 175.06 3029 170 3154.75 129.08 3188.25 \
119.3 3320 108 3446.89 97.12 4300.6 92.68 4612.88 91.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4612.55 93.87 4619.54 91.39 4612.53 88.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3044 178.1 0 30 7 -img_dir ",
		label=img_dir,
		lp="3044,180",
		pos="e,4621.1,91.381 2952.2,268.65 2949.2,253.08 2945.3,219.29 2961,198 2970.7,184.84 3013.5,175.06 3029,170 3154.7,129.08 3188.2,119.3 \
3320,108 3446.9,97.118 4300.6,92.685 4612.9,91.414"];
	fastq_dir -> salmon_quantification	[_draw_="c 7 -#000000 B 13 3257.09 268.53 3241.1 265.29 3222.23 261.93 3205 260 3106.88 249.03 3081.13 262.91 2983 252 2961.43 249.6 2956.52 \
245.81 2935 243 2882.91 236.19 2823.71 231.87 2778.83 229.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2778.97 226.84 2771.84 228.89 2778.7 231.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3001 245.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="3001,247.5",
		pos="e,2770.3,228.81 3257.1,268.53 3241.1,265.29 3222.2,261.93 3205,260 3106.9,249.03 3081.1,262.91 2983,252 2961.4,249.6 2956.5,245.81 \
2935,243 2882.9,236.19 2823.7,231.87 2778.8,229.29"];
	fastqc	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3343 215.5 3343 234.5 3593 234.5 3593 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3468 222.5 0 234 49 -Runs fastQC on each fastq file in fastq directory ",
		height=0.27778,
		label="Runs fastQC on each fastq file in fastq directory",
		pos="3468,225",
		rects="3343,215.5,3593,234.5",
		width=3.4722];
	fastq_dir -> fastqc	[_draw_="c 7 -#000000 B 4 3323.57 268.58 3353.12 259.87 3399.36 246.23 3431.53 236.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3431.92 239.19 3437.94 234.86 3430.53 234.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3425 245.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="3425,247.5",
		pos="e,3439.4,234.43 3323.6,268.58 3353.1,259.87 3399.4,246.23 3431.5,236.75"];
	expected_cell_count -> salmon_quantification	[_draw_="c 7 -#000000 B 13 2205.65 268.51 2216.71 265.23 2229.86 261.83 2242 260 2296.74 251.73 2437.06 264.49 2491 252 2500.5 249.8 2501.57 \
245.45 2511 243 2552.08 232.31 2599.43 227.99 2637.42 226.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2637.46 228.82 2644.36 226.1 2637.27 223.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2552.5 245.6 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="2552.5,247.5",
		pos="e,2645.9,226.04 2205.7,268.51 2216.7,265.23 2229.9,261.83 2242,260 2296.7,251.73 2437.1,264.49 2491,252 2500.5,249.8 2501.6,245.45 \
2511,243 2552.1,232.31 2599.4,227.99 2637.4,226.37"];
	keep_all_barcodes -> salmon_quantification	[_draw_="c 7 -#000000 B 7 2672.09 268.72 2673.4 261.35 2676.2 250.59 2682 243 2682.88 241.85 2683.86 240.76 2684.91 239.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2686.41 241.65 2690.3 235.33 2683.32 237.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2720 245.6 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="2720,247.5",
		pos="e,2691.5,234.38 2672.1,268.72 2673.4,261.35 2676.2,250.59 2682,243 2682.9,241.85 2683.9,240.76 2684.9,239.72"];
	threads -> salmon_quantification	[_draw_="c 7 -#000000 B 7 3431.36 268.54 3416.17 265.35 3398.31 262.01 3382 260 3162.9 232.96 2901.2 227.31 2778.3 226.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2778.59 223.76 2771.57 226.15 2778.55 228.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3325 245.6 0 32 7 -threads ",
		label=threads,
		lp="3325,247.5",
		pos="e,2770.1,226.14 3431.4,268.54 3416.2,265.35 3398.3,262.01 3382,260 3162.9,232.96 2901.2,227.31 2778.3,226.2"];
	threads -> fastqc	[_draw_="c 7 -#000000 B 4 3468 268.58 3468 261.52 3468 251.24 3468 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3470.45 242.78 3468 235.78 3465.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3484 245.6 0 32 7 -threads ",
		label=threads,
		lp="3484,247.5",
		pos="e,3468,234.26 3468,268.58 3468,261.52 3468,251.24 3468,242.55"];
	metadata_dir -> salmon_quantification	[_draw_="c 7 -#000000 B 10 2504.65 268.55 2533.23 264.61 2565.82 259.17 2595 252 2606.88 249.08 2609.19 246.18 2621 243 2630.4 240.47 2640.47 \
238.15 2650.31 236.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2650.64 238.52 2657.01 234.73 2649.66 233.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2648.5 245.6 0 55 12 -metadata_dir ",
		label=metadata_dir,
		lp="2648.5,247.5",
		pos="e,2658.5,234.43 2504.6,268.55 2533.2,264.61 2565.8,259.17 2595,252 2606.9,249.08 2609.2,246.18 2621,243 2630.4,240.47 2640.5,238.15 \
2650.3,236.09"];
	organism -> salmon_quantification	[_draw_="c 7 -#000000 B 13 2100.79 268.62 2107.03 265.27 2114.65 261.8 2122 260 2186.14 244.34 2353.72 261.9 2419 252 2433.61 249.78 2436.44 \
245.5 2451 243 2513.31 232.3 2585.18 228.23 2637.05 226.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2637.07 229.19 2644 226.55 2636.94 224.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2470.5 245.6 0 39 8 -organism ",
		label=organism,
		lp="2470.5,247.5",
		pos="e,2645.5,226.51 2100.8,268.62 2107,265.27 2114.7,261.8 2122,260 2186.1,244.34 2353.7,261.9 2419,252 2433.6,249.78 2436.4,245.5 2451,\
243 2513.3,232.3 2585.2,228.23 2637,226.74"];
	deepscence	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2414.5 170.5 2414.5 189.5 2601.5 189.5 2601.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2508 177.5 0 171 35 -Identify and score scenescent cells ",
		height=0.27778,
		label="Identify and score scenescent cells",
		pos="2508,180",
		rects="2414.5,170.5,2601.5,189.5",
		width=2.5972];
	organism -> deepscence	[_draw_="c 7 -#000000 B 7 2102.33 268.52 2108.32 265.49 2115.35 262.26 2122 260 2227.16 224.33 2354.16 202.13 2433.02 190.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2433.37 193.09 2439.95 189.67 2432.67 188.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2309.5 223.1 0 39 8 -organism ",
		label=organism,
		lp="2309.5,225",
		pos="e,2441.5,189.45 2102.3,268.52 2108.3,265.49 2115.3,262.26 2122,260 2227.2,224.33 2354.2,202.13 2433,190.66"];
	salmon_quantification -> genome_build_json	[_draw_="c 7 -#000000 B 16 2717.14 215.74 2724.97 207.71 2735 194.75 2735 181 2735 181 2735 181 2735 89 2735 85.51 2564.19 71.84 2547 71 \
2375.42 62.63 1945.25 76.59 1774 63 1754.8 61.48 1733.92 58.69 1715.34 55.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1715.77 53.4 1708.47 54.73 1715 58.24 ",
		pos="e,1707,54.492 2717.1,215.74 2725,207.71 2735,194.75 2735,181 2735,181 2735,181 2735,89 2735,85.509 2564.2,71.839 2547,71 2375.4,\
62.628 1945.2,76.59 1774,63 1754.8,61.476 1733.9,58.695 1715.3,55.817"];
	salmon_quantification -> salmon_output	[_draw_="c 7 -#000000 B 13 2770.46 221.39 2841.19 215.82 2957.43 198.5 3041 145 3058.6 133.73 3051.4 117.52 3070 108 3181.86 50.77 4075.21 \
77.73 4200 63 4213.64 61.39 4228.36 58.8 4241.69 56.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4241.95 58.57 4248.31 54.76 4240.96 53.77 ",
		pos="e,4249.8,54.455 2770.5,221.39 2841.2,215.82 2957.4,198.5 3041,145 3058.6,133.73 3051.4,117.52 3070,108 3181.9,50.767 4075.2,77.728 \
4200,63 4213.6,61.39 4228.4,58.802 4241.7,56.125"];
	salmon_quantification -> raw_count_matrix	[_draw_="c 7 -#000000 B 13 2645.86 222.55 2402.69 216.79 1529 195.11 1529 181 1529 181 1529 181 1529 89 1529 60.8 542.17 64.31 514 63 470.85 \
60.99 423.57 57.99 381.8 55.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 382.19 52.65 375.04 54.6 381.85 57.53 ",
		pos="e,373.53,54.492 2645.9,222.55 2402.7,216.79 1529,195.11 1529,181 1529,181 1529,181 1529,89 1529,60.796 542.17,64.314 514,63 470.85,\
60.987 423.57,57.992 381.8,55.074"];
	salmon_quantification -> compute_qc_results	[_draw_="c 7 -#000000 B 10 2683.96 215.51 2660.97 206.1 2627.18 188.63 2609 162 2599.56 148.18 2606.56 141.1 2602 125 2600.29 118.95 2597.94 \
112.48 2595.72 106.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2598.11 106.2 2593.2 100.64 2593.58 108.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2631.5 155.6 0 45 10 -salmon_dir ",
		label=salmon_dir,
		lp="2631.5,157.5",
		pos="e,2592.6,99.243 2684,215.51 2661,206.1 2627.2,188.63 2609,162 2599.6,148.18 2606.6,141.1 2602,125 2600.3,118.95 2597.9,112.48 2595.7,\
106.81"];
	salmon_quantification -> deepscence	[_draw_="c 7 -#000000 B 7 2645.81 220.48 2620.98 218.05 2592.32 213.94 2567 207 2554.78 203.65 2541.84 198.18 2531.2 193.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2532.28 190.93 2524.92 190.04 2530.12 195.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2586 200.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="2586,202.5",
		pos="e,2523.6,189.38 2645.8,220.48 2621,218.05 2592.3,213.94 2567,207 2554.8,203.65 2541.8,198.18 2531.2,193.12"];
	compute_qc_results -> scanpy_qc_results	[_draw_="c 7 -#000000 B 10 2550.36 80.53 2531.63 76.83 2508.75 72.91 2488 71 2236.17 47.84 1601.94 84.95 1350 63 1333.1 61.53 1314.78 58.79 \
1298.44 55.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1298.9 53.54 1291.58 54.71 1298.03 58.36 ",
		pos="e,1290.1,54.445 2550.4,80.53 2531.6,76.832 2508.8,72.908 2488,71 2236.2,47.843 1601.9,84.947 1350,63 1333.1,61.528 1314.8,58.794 \
1298.4,55.941"];
	compute_qc_results -> qc_report	[_draw_="c 7 -#000000 B 10 2571.19 80.62 2562.33 76.89 2551.33 72.92 2541 71 2486.87 60.96 1604.85 67.76 1550 63 1532.79 61.51 1514.1 58.73 \
1497.48 55.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1498.31 53.51 1490.99 54.7 1497.45 58.34 ",
		pos="e,1489.5,54.434 2571.2,80.617 2562.3,76.89 2551.3,72.916 2541,71 2486.9,60.958 1604.9,67.763 1550,63 1532.8,61.505 1514.1,58.731 \
1497.5,55.852"];
	scvelo_analysis -> scvelo_embedding_grid_plot	[_draw_="c 7 -#000000 B 10 2999.12 80.54 3010.39 76.85 3024.22 72.92 3037 71 3111.83 59.74 3642.64 69.87 3718 63 3734.42 61.5 3752.21 58.79 \
3768.12 55.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3768.31 58.43 3774.76 54.76 3767.44 53.61 ",
		pos="e,3776.3,54.492 2999.1,80.543 3010.4,76.847 3024.2,72.922 3037,71 3111.8,59.741 3642.6,69.869 3718,63 3734.4,61.504 3752.2,58.795 \
3768.1,55.972"];
	scvelo_analysis -> scvelo_annotated_h5ad	[_draw_="c 7 -#000000 B 10 3010.77 80.55 3027.64 76.85 3048.26 72.93 3067 71 3254.02 51.79 3725.37 74.85 3913 63 3938.12 61.41 3965.56 58.5 \
3989.75 55.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3990.02 57.96 3996.66 54.66 3989.41 53.1 ",
		pos="e,3998.2,54.476 3010.8,80.546 3027.6,76.851 3048.3,72.926 3067,71 3254,51.787 3725.4,74.852 3913,63 3938.1,61.413 3965.6,58.5 3989.8,\
55.528"];
	deepscence -> count_matrix_h5ad	[_draw_="c 7 -#000000 B 16 2414.66 171.36 2336.03 164.8 2220.61 154.86 2120 145 1935.36 126.9 1888.77 125.43 1705 100 1628.21 89.37 1610.2 \
78.11 1533 71 1426.1 61.16 1157.26 67.26 1050 63 1002.4 61.11 950.12 58.05 904.36 55.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 904.55 52.6 897.4 54.58 904.23 57.49 ",
		pos="e,895.89,54.478 2414.7,171.36 2336,164.8 2220.6,154.86 2120,145 1935.4,126.9 1888.8,125.43 1705,100 1628.2,89.372 1610.2,78.106 \
1533,71 1426.1,61.16 1157.3,67.263 1050,63 1002.4,61.108 950.12,58.046 904.36,55.039"];
	deepscence -> deepscence_plot	[_draw_="c 7 -#000000 B 10 2451.68 170.51 2307.26 149.16 1911.75 93.35 1580 71 1485.09 64.61 1245.84 78.58 1152 63 1144.23 61.71 1136.03 \
59.52 1128.47 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.42 54.86 1122 54.97 1127.87 59.51 ",
		pos="e,1120.6,54.492 2451.7,170.51 2307.3,149.16 1911.8,93.352 1580,71 1485.1,64.605 1245.8,78.582 1152,63 1144.2,61.71 1136,59.518 1128.5,\
57.129"];
	deepscence -> compute_qc_results	[_draw_="c 7 -#000000 B 7 2508.1 170.76 2508.65 159.29 2511.19 138.43 2522 125 2529.91 115.17 2541.4 107.92 2552.64 102.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2553.47 105 2558.94 99.99 2551.54 100.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2563.5 133.1 0 83 19 -primary_matrix_path ",
		label=primary_matrix_path,
		lp="2563.5,135",
		pos="e,2560.3,99.399 2508.1,170.76 2508.6,159.29 2511.2,138.43 2522,125 2529.9,115.17 2541.4,107.92 2552.6,102.7"];
	deepscence -> scvelo_analysis	[_draw_="c 7 -#000000 B 7 2601.3 177.28 2724.33 174.2 2928.53 165.97 2956 145 2967.64 136.12 2972.51 119.72 2974.54 107.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2976.94 107.91 2975.39 100.66 2972.07 107.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3004.5 133.1 0 71 17 -spliced_h5ad_file ",
		label=spliced_h5ad_file,
		lp="3004.5,135",
		pos="e,2975.6,99.16 2601.3,177.28 2724.3,174.2 2928.5,165.97 2956,145 2967.6,136.12 2972.5,119.72 2974.5,107.32"];
	deepscence -> scanpy_analysis	[_draw_="c 7 -#000000 B 7 2583.57 170.54 2606.52 167.89 2631.8 164.9 2655 162 2696.17 156.85 2742.22 150.66 2779.01 145.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2779.09 148.08 2785.69 144.7 2778.42 143.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2743 155.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="2743,157.5",
		pos="e,2787.2,144.49 2583.6,170.54 2606.5,167.89 2631.8,164.9 2655,162 2696.2,156.85 2742.2,150.66 2779,145.61"];
	scanpy_analysis -> deepscence_binary_plot	[_draw_="c 7 -#000000 B 16 2831.73 125.62 2827.16 123.04 2822.28 120.07 2818 117 2808.8 110.39 2807.02 108.01 2799 100 2786.75 87.77 2788.75 \
78.18 2773 71 2747.37 59.31 2294.1 65 2266 63 2243.18 61.38 2218.3 58.52 2196.24 55.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2196.7 53.2 2189.43 54.7 2196.04 58.06 ",
		pos="e,2187.9,54.496 2831.7,125.62 2827.2,123.04 2822.3,120.07 2818,117 2808.8,110.39 2807,108.01 2799,100 2786.8,87.766 2788.8,78.182 \
2773,71 2747.4,59.312 2294.1,64.998 2266,63 2243.2,61.378 2218.3,58.524 2196.2,55.612"];
	scanpy_analysis -> filtered_data_h5ad	[_draw_="c 7 -#000000 B 13 2838.42 125.74 2830.91 119.09 2820.38 109.34 2812 100 2801.19 87.96 2804.41 78.36 2790 71 2772.38 62 2453.67 65.15 \
2434 63 2420.09 61.48 2405.08 58.86 2391.56 56.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2392.19 53.75 2384.83 54.73 2391.19 58.55 ",
		pos="e,2383.4,54.418 2838.4,125.74 2830.9,119.09 2820.4,109.34 2812,100 2801.2,87.961 2804.4,78.358 2790,71 2772.4,62.003 2453.7,65.148 \
2434,63 2420.1,61.481 2405.1,58.861 2391.6,56.126"];
	scanpy_analysis -> spatial_plot	[_draw_="c 7 -#000000 B 10 2843.49 125.82 2834.73 110.25 2815.28 77.34 2804 71 2791.67 64.07 2691.07 64.41 2677 63 2657.41 61.04 2636.16 \
58.34 2616.87 55.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2617.22 53.24 2609.95 54.7 2616.54 58.1 ",
		pos="e,2608.5,54.487 2843.5,125.82 2834.7,110.25 2815.3,77.34 2804,71 2791.7,64.073 2691.1,64.406 2677,63 2657.4,61.043 2636.2,58.342 \
2616.9,55.669"];
	scanpy_analysis -> marker_gene_plot_t_test	[_draw_="c 7 -#000000 B 7 2845.41 125.57 2840.24 108.87 2828.99 73 2827 71 2821.33 65.31 2814.32 60.91 2806.9 57.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2808.17 55.39 2800.77 55.01 2806.32 59.93 ",
		pos="e,2799.4,54.441 2845.4,125.57 2840.2,108.87 2829,73.001 2827,71 2821.3,65.307 2814.3,60.91 2806.9,57.514"];
	scanpy_analysis -> umap_plot	[_draw_="c 7 -#000000 B 7 2846.33 125.59 2844.22 112.4 2842.27 86.75 2855 71 2859.4 65.55 2865.03 61.28 2871.22 57.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2872.04 60.26 2877.34 55.07 2869.96 55.83 ",
		pos="e,2878.7,54.425 2846.3,125.59 2844.2,112.4 2842.3,86.747 2855,71 2859.4,65.553 2865,61.284 2871.2,57.941"];
	scanpy_analysis -> umap_density_plot	[_draw_="c 7 -#000000 B 10 2849.14 125.91 2851.48 110.5 2857.36 77.86 2866 71 2879.94 59.93 3008.25 64.4 3026 63 3051.7 60.98 3079.69 58.17 \
3104.87 55.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3105.1 57.85 3111.79 54.65 3104.56 52.98 ",
		pos="e,3113.3,54.481 2849.1,125.91 2851.5,110.5 2857.4,77.863 2866,71 2879.9,59.929 3008.3,64.397 3026,63 3051.7,60.977 3079.7,58.166 \
3104.9,55.411"];
	scanpy_analysis -> marker_gene_plot_logreg	[_draw_="c 7 -#000000 B 10 2851.63 125.51 2858.84 108.69 2874.53 72.61 2877 71 2887.72 64 3325.24 64.16 3338 63 3355.14 61.45 3373.74 58.7 \
3390.35 55.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3390.37 58.36 3396.84 54.74 3389.52 53.53 ",
		pos="e,3398.3,54.479 2851.6,125.51 2858.8,108.69 2874.5,72.613 2877,71 2887.7,63.999 3325.2,64.157 3338,63 3355.1,61.445 3373.7,58.705 \
3390.4,55.872"];
	scanpy_analysis -> dispersion_plot	[_draw_="c 7 -#000000 B 16 2854.39 125.73 2856.5 122.96 2858.87 119.86 2861 117 2867.09 108.85 2879.08 84.9 2888 80 2943.44 49.58 2966.81 \
73.5 3030 71 3143.48 66.52 3428.01 74.47 3541 63 3555.68 61.51 3571.54 58.87 3585.8 56.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3586.12 58.54 3592.5 54.76 3585.16 53.73 ",
		pos="e,3594,54.468 2854.4,125.73 2856.5,122.96 2858.9,119.86 2861,117 2867.1,108.85 2879.1,84.896 2888,80 2943.4,49.58 2966.8,73.496 \
3030,71 3143.5,66.518 3428,74.47 3541,63 3555.7,61.51 3571.5,58.866 3585.8,56.102"];
	scanpy_analysis -> deepscence_continuous_plot	[_draw_="c 7 -#000000 B 13 2824.48 125.53 2818.34 123.03 2811.82 120.13 2806 117 2774.18 99.9 2773.44 81.89 2739 71 2699.96 58.65 2042.82 \
66.2 2002 63 1982.38 61.46 1961.03 58.66 1942.06 55.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1942.6 53.37 1935.3 54.72 1941.84 58.22 ",
		pos="e,1933.8,54.485 2824.5,125.53 2818.3,123.03 2811.8,120.13 2806,117 2774.2,99.901 2773.4,81.89 2739,71 2700,58.655 2042.8,66.198 \
2002,63 1982.4,61.463 1961,58.662 1942.1,55.771"];
	scanpy_analysis -> compute_qc_results	[_draw_="c 7 -#000000 B 7 2742.02 127.66 2718.18 125.18 2693.11 121.75 2670 117 2652.79 113.46 2634.08 107.59 2618.99 102.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2619.84 100.04 2612.43 99.99 2618.2 104.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2717.5 110.6 0 95 21 -secondary_matrix_path ",
		label=secondary_matrix_path,
		lp="2717.5,112.5",
		pos="e,2611,99.486 2742,127.66 2718.2,125.18 2693.1,121.75 2670,117 2652.8,113.46 2634.1,107.59 2619,102.33"];
	scanpy_analysis -> squidpy_analysis	[_draw_="c 7 -#000000 B 7 2908.16 125.53 2954.7 119.39 3020.79 111.57 3079 108 3378 89.68 4290.43 89.96 4612.75 90.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4612.67 93.11 4619.67 90.68 4612.68 88.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3098 110.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="3098,112.5",
		pos="e,4621.2,90.682 2908.2,125.53 2954.7,119.39 3020.8,111.57 3079,108 3378,89.678 4290.4,89.955 4612.8,90.663"];
	squidpy_analysis -> squidpy_annotated_h5ad	[_draw_="c 7 -#000000 B 10 4787.93 80.5 4815.92 76.94 4849.59 73.14 4880 71 4955.83 65.66 5146.58 72.56 5222 63 5233.42 61.55 5245.66 59.08 \
5256.8 56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5257.37 58.83 5263.59 54.79 5256.21 54.07 ",
		pos="e,5265.1,54.435 4787.9,80.505 4815.9,76.944 4849.6,73.14 4880,71 4955.8,65.664 5146.6,72.56 5222,63 5233.4,61.552 5245.7,59.076 \
5256.8,56.454"];
	squidpy_analysis -> squidpy_spatial_plot	[_draw_="c 7 -#000000 B 10 4791.93 80.53 4822.27 76.92 4858.93 73.08 4892 71 4996.92 64.4 5260.94 77.91 5365 63 5374.39 61.66 5384.38 59.33 \
5393.53 56.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5394.15 59.19 5400.21 54.91 5392.8 54.48 ",
		pos="e,5401.7,54.493 4791.9,80.526 4822.3,76.923 4858.9,73.079 4892,71 4996.9,64.404 5260.9,77.905 5365,63 5374.4,61.655 5384.4,59.33 \
5393.5,56.823"];
	squidpy_analysis -> neighborhood_enrichment_plot	[_draw_="c 7 -#000000 B 7 4661.66 80.52 4626.69 75.78 4582.93 69.52 4544 63 4531.54 60.91 4518.13 58.44 4505.62 56.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4506.38 53.68 4499.04 54.76 4505.45 58.49 ",
		pos="e,4497.6,54.467 4661.7,80.519 4626.7,75.778 4582.9,69.521 4544,63 4531.5,60.912 4518.1,58.438 4505.6,56.033"];
	squidpy_analysis -> centrality_scores_plot	[_draw_="c 7 -#000000 B 4 4703.09 80.5 4684.37 73.85 4658.15 64.53 4637.67 57.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4638.7 55.02 4631.28 54.98 4637.06 59.64 ",
		pos="e,4629.9,54.478 4703.1,80.505 4684.4,73.85 4658.1,64.532 4637.7,57.256"];
	squidpy_analysis -> co_occurrence_plot	[_draw_="c 7 -#000000 B 4 4727 80.71 4727 75.59 4727 68.85 4727 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4729.45 62.78 4727 55.78 4724.55 62.78 ",
		pos="e,4727,54.265 4727,80.709 4727,75.593 4727,68.848 4727,62.666"];
	squidpy_analysis -> interaction_matrix_plot	[_draw_="c 7 -#000000 B 4 4751.7 80.5 4771.13 73.82 4798.37 64.45 4819.56 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4820.1 59.56 4825.92 54.97 4818.51 54.93 ",
		pos="e,4827.4,54.478 4751.7,80.505 4771.1,73.82 4798.4,64.449 4819.6,57.16"];
	squidpy_analysis -> ripley_plot	[_draw_="c 7 -#000000 B 10 4781.91 80.53 4802.88 77.39 4827.03 73.89 4849 71 4879.61 66.97 4888.23 71.18 4918 63 4922.82 61.68 4927.81 59.83 \
4932.53 57.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4933.38 60.14 4938.75 55.03 4931.36 55.67 ",
		pos="e,4940.1,54.403 4781.9,80.528 4802.9,77.39 4827,73.894 4849,71 4879.6,66.969 4888.2,71.176 4918,63 4922.8,61.676 4927.8,59.825 4932.5,\
57.83"];
	squidpy_analysis -> sdata_zarr	[_draw_="c 7 -#000000 B 10 4785.75 80.53 4810.48 77.19 4839.6 73.55 4866 71 4921.41 65.64 4935.63 68.78 4991 63 5009.5 61.07 5029.56 58.37 \
5047.77 55.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5047.93 58.15 5054.49 54.7 5047.2 53.3 ",
		pos="e,5056,54.473 4785.7,80.535 4810.5,77.193 4839.6,73.551 4866,71 4921.4,65.645 4935.6,68.785 4991,63 5009.5,61.067 5029.6,58.372 \
5047.8,55.698"];
	fastqc -> fastqc_dir	[_draw_="c 7 -#000000 B 13 3592.85 223.47 3940.79 221.59 4896 213.46 4896 181 4896 181 4896 181 4896 89 4896 56.19 5453.27 65.32 5486 63 \
5514.8 60.96 5546.21 58.09 5574.33 55.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5574.33 57.75 5581.05 54.61 5573.84 52.87 ",
		pos="e,5582.6,54.46 3592.9,223.47 3940.8,221.59 4896,213.46 4896,181 4896,181 4896,181 4896,89 4896,56.19 5453.3,65.318 5486,63 5514.8,\
60.96 5546.2,58.09 5574.3,55.287"];
}