digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 410.5 1573.71 410.5 1573.71 0 ",
		bb="0,0,1573.7,410.5",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 118.71 279 118.71 353 1022.71 353 1022.71 279 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 168.71 341 0 84 15 -Workflow Inputs ",
			bb="118.71,279,1022.7,353",
			label="Workflow Inputs",
			lheight=0.15,
			lp="168.71,343.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		expected_cell_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 192.71 287.5 192.71 306.5 308.71 306.5 308.71 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 250.71 294.5 0 100 19 -expected_cell_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expected_cell_count,
			pos="250.71,297",
			rects="192.71,287.5,308.71,306.5",
			width=1.6111];
		assay	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 770.21 287.5 770.21 306.5 871.21 306.5 871.21 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 820.71 294.5 0 85 15 -scRNA-seq assay ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="scRNA-seq assay",
			pos="820.71,297",
			rects="770.21,287.5,871.21,306.5",
			width=1.4028];
		keep_all_barcodes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 313.21 287.5 313.21 306.5 420.21 306.5 420.21 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 366.71 294.5 0 91 17 -keep_all_barcodes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=keep_all_barcodes,
			pos="366.71,297",
			rects="313.21,287.5,420.21,306.5",
			width=1.4861];
		metadata_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 932.71 287.5 932.71 306.5 1014.71 306.5 1014.71 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 973.71 294.5 0 66 12 -metadata_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=metadata_dir,
			pos="973.71,297",
			rects="932.71,287.5,1014.7,306.5",
			width=1.1389];
		fastq_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 593.21 287.5 593.21 306.5 766.21 306.5 766.21 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 679.71 294.5 0 157 32 -Directory containing FASTQ files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Directory containing FASTQ files",
			pos="679.71,297",
			rects="593.21,287.5,766.21,306.5",
			width=2.4028];
		organism	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 126.71 287.5 126.71 306.5 188.71 306.5 188.71 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 157.71 294.5 0 46 8 -organism ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=organism,
			pos="157.71,297",
			rects="126.71,287.5,188.71,306.5",
			width=0.86111];
		threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 424.71 287.5 424.71 306.5 588.71 306.5 588.71 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506.71 294.5 0 148 28 -Number of threads for Salmon ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Number of threads for Salmon",
			pos="506.71,297",
			rects="424.71,287.5,588.71,306.5",
			width=2.2778];
		img_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 875.21 287.5 875.21 306.5 928.21 306.5 928.21 287.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 901.71 294.5 0 37 7 -img_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=img_dir,
			pos="901.71,297",
			rects="875.21,287.5,928.21,306.5",
			width=0.73611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 225.71 8 225.71 82 1565.71 82 1565.71 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 279.71 15 0 92 16 -Workflow Outputs ",
			bb="225.71,8,1565.7,82",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="279.71,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		raw_count_matrix	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 401.71 54.5 401.71 73.5 895.71 73.5 895.71 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 648.71 61.5 0 478 96 -Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts \
as separate columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, with intronic counts as separate columns",
			pos="648.71,64",
			rects="401.71,54.5,895.71,73.5",
			width=6.8611];
		genome_build_json	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 899.71 54.5 899.71 73.5 1119.71 73.5 1119.71 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1009.71 61.5 0 204 39 -Genome build information in JSON format ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Genome build information in JSON format",
			pos="1009.7,64",
			rects="899.71,54.5,1119.7,73.5",
			width=3.0556];
		count_matrix_h5ad	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1123.71 54.5 1123.71 73.5 1557.71 73.5 1557.71 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1340.71 61.5 0 418 84 -Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced \
counts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Unfiltered count matrix from Alevin, converted to H5AD, spliced and unspliced counts",
			pos="1340.7,64",
			rects="1123.7,54.5,1557.7,73.5",
			width=6.0278];
		salmon_output	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 233.71 54.5 233.71 73.5 397.71 73.5 397.71 54.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 315.71 61.5 0 148 30 -Full output of `salmon alevin` ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Full output of `salmon alevin`",
			pos="315.71,64",
			rects="233.71,54.5,397.71,73.5",
			width=2.2778];
	}
	salmon	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 480.21 189.5 480.21 208.5 687.21 208.5 687.21 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 583.71 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="583.71,199",
		rects="480.21,189.5,687.21,208.5",
		width=2.875];
	expected_cell_count -> salmon	[_draw_="c 7 -#000000 B 10 259.86 287.74 268.25 279.76 280.59 267.01 288.71 254 293.78 245.88 289.11 239.83 296.71 234 304.31 228.17 405.03 \
217.19 485.03 209.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 484.96 211.75 491.69 208.63 484.48 206.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 338.21 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="338.21,244",
		pos="e,493.19,208.48 259.86,287.74 268.25,279.76 280.59,267.01 288.71,254 293.78,245.88 289.11,239.83 296.71,234 304.31,228.17 405.03,\
217.19 485.03,209.29"];
	"salmon-mouse"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 269.21 189.5 269.21 208.5 476.21 208.5 476.21 189.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 372.71 196.5 0 191 37 -Run Salmon Alevin tool on FASTQ input ",
		height=0.27778,
		label="Run Salmon Alevin tool on FASTQ input",
		pos="372.71,199",
		rects="269.21,189.5,476.21,208.5",
		width=2.875];
	expected_cell_count -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 220.82 287.51 210.66 284.7 199.21 281.62 188.71 279 137.06 266.11 42.29 273.74 77.71 234 90.12 220.08 182.78 211.03 \
260.99 205.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 261.14 208.24 267.97 205.34 260.82 203.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 119.21 242.1 0 83 19 -expected_cell_count ",
		label=expected_cell_count,
		lp="119.21,244",
		pos="e,269.48,205.24 220.82,287.51 210.66,284.7 199.21,281.62 188.71,279 137.06,266.11 42.288,273.74 77.709,234 90.121,220.08 182.78,\
211.03 260.99,205.79"];
	assay -> salmon	[_draw_="c 7 -#000000 B 7 822.32 287.59 824.31 274.42 825.98 248.92 812.71 234 796.67 215.97 745.3 207.38 695.28 203.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 695.61 200.9 688.45 202.81 695.24 205.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 834.21 242.1 0 25 5 -assay ",
		label=assay,
		lp="834.21,244",
		pos="e,686.94,202.7 822.32,287.59 824.31,274.42 825.98,248.92 812.71,234 796.67,215.97 745.3,207.38 695.28,203.33"];
	assay -> "salmon-mouse"	[_draw_="c 7 -#000000 B 19 817.29 287.64 813.93 280.21 808.21 269.41 800.71 262 795.61 256.96 791.29 259.51 786.71 254 780.68 246.76 786.88 \
240.1 779.71 234 764.24 220.84 754.69 229.65 734.71 226 713.36 222.1 708.28 219.43 686.71 217 598.24 207.04 573.55 214.15 481 208.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 481.37 206.54 474.24 208.58 481.08 211.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 799.21 242.1 0 25 5 -assay ",
		label=assay,
		lp="799.21,244",
		pos="e,472.73,208.49 817.29,287.64 813.93,280.21 808.21,269.41 800.71,262 795.61,256.96 791.29,259.51 786.71,254 780.68,246.76 786.88,\
240.1 779.71,234 764.24,220.84 754.69,229.65 734.71,226 713.36,222.1 708.28,219.43 686.71,217 598.24,207.04 573.55,214.15 481,208.98"];
	trim_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 684.21 234.5 684.21 253.5 779.21 253.5 779.21 234.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 731.71 241.5 0 79 16 -Trim FASTQ files ",
		height=0.27778,
		label="Trim FASTQ files",
		pos="731.71,244",
		rects="684.21,234.5,779.21,253.5",
		width=1.3194];
	assay -> trim_reads	[_draw_="c 7 -#000000 B 4 806.01 287.58 791.71 279.38 769.81 266.83 753.49 257.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 755.03 255.54 747.74 254.19 752.6 259.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 788.21 264.6 0 25 5 -assay ",
		label=assay,
		lp="788.21,266.5",
		pos="e,746.43,253.43 806.01,287.58 791.71,279.38 769.81,266.83 753.49,257.48"];
	adjust_barcodes	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1031.21 287.5 1031.21 306.5 1256.21 306.5 1256.21 287.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1143.71 294.5 0 209 42 -Assay-specific adjustment of cell barcodes ",
		height=0.27778,
		label="Assay-specific adjustment of cell barcodes",
		pos="1143.7,297",
		rects="1031.2,287.5,1256.2,306.5",
		width=3.125];
	assay -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 826.42 306.25 835.16 319.38 853.21 342.9 875.71 352.25 936.45 377.49 959.46 366.33 1023.71 352.25 1059.94 344.31 \
1098.28 324.35 1121.61 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1122.86 312.84 1127.62 307.15 1120.35 308.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 950.71 363.6 0 25 5 -assay ",
		label=assay,
		lp="950.71,365.5",
		pos="e,1128.9,306.38 826.42,306.25 835.16,319.38 853.21,342.9 875.71,352.25 936.45,377.49 959.46,366.33 1023.7,352.25 1059.9,344.31 1098.3,\
324.35 1121.6,310.73"];
	annotate_cells	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 797.21 99.5 797.21 118.5 1114.21 118.5 1114.21 99.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 955.71 106.5 0 301 63 -Assay-specific annotation of cell barcodes after quantification ",
		height=0.27778,
		label="Assay-specific annotation of cell barcodes after quantification",
		pos="955.71,109",
		rects="797.21,99.5,1114.2,118.5",
		width=4.4028];
	assay -> annotate_cells	[_draw_="c 7 -#000000 B 7 832.21 287.54 851.01 273.2 888.56 242.42 911.71 209 930.09 182.47 943.6 147.02 950.51 126.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.82 127.35 952.67 119.94 948.16 125.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 935.21 197.1 0 25 5 -assay ",
		label=assay,
		lp="935.21,199",
		pos="e,953.14,118.5 832.21,287.54 851.01,273.2 888.56,242.42 911.71,209 930.09,182.47 943.6,147.02 950.51,126.53"];
	alevin_to_anndata	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 467.71 144.5 467.71 163.5 829.71 163.5 829.71 144.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 648.71 151.5 0 346 68 -Convert Alevin sparse output to anndata.AnnData object, save as h5ad ",
		height=0.27778,
		label="Convert Alevin sparse output to anndata.AnnData object, save as h5ad",
		pos="648.71,154",
		rects="467.71,144.5,829.71,163.5",
		width=5.0278];
	assay -> alevin_to_anndata	[_draw_="c 7 -#000000 B 7 829.18 287.88 841 275.56 859.71 251.68 847.71 234 821.23 195 772.14 175.25 729.35 165.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 730.01 162.89 722.64 163.77 728.95 167.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 853.21 219.6 0 25 5 -assay ",
		label=assay,
		lp="853.21,221.5",
		pos="e,721.16,163.44 829.18,287.88 841,275.56 859.71,251.68 847.71,234 821.23,195 772.14,175.25 729.35,165.25"];
	keep_all_barcodes -> salmon	[_draw_="c 7 -#000000 B 10 380.14 287.58 391.66 279.88 408.19 267.63 419.71 254 426.26 246.25 422.59 240.09 430.71 234 444.96 223.31 461.93 \
215.87 479.3 210.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 479.75 213.13 485.84 208.9 478.44 208.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 468.71 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="468.71,244",
		pos="e,487.3,208.49 380.14,287.58 391.66,279.88 408.19,267.63 419.71,254 426.26,246.25 422.59,240.09 430.71,234 444.96,223.31 461.93,\
215.87 479.3,210.71"];
	keep_all_barcodes -> "salmon-mouse"	[_draw_="c 7 -#000000 B 10 338.43 287.57 328.99 284.8 318.41 281.72 308.71 279 264.5 266.58 186.88 269.74 215.71 234 224.75 222.79 252.06 \
215.09 281.41 209.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.74 212.32 288.24 208.75 280.93 207.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253.71 242.1 0 76 17 -keep_all_barcodes ",
		label=keep_all_barcodes,
		lp="253.71,244",
		pos="e,289.73,208.49 338.43,287.57 328.99,284.8 318.41,281.72 308.71,279 264.5,266.58 186.88,269.74 215.71,234 224.75,222.79 252.06,215.09 \
281.41,209.89"];
	metadata_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 979.17 287.73 985.1 277.95 993.71 260.98 993.71 245 993.71 245 993.71 245 993.71 153 993.71 141.09 985.42 130.93 \
976.59 123.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 978.11 121.55 971.06 119.25 975.13 125.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1021.21 197.1 0 55 12 -metadata_dir ",
		label=metadata_dir,
		lp="1021.2,199",
		pos="e,969.86,118.33 979.17,287.73 985.1,277.95 993.71,260.98 993.71,245 993.71,245 993.71,245 993.71,153 993.71,141.09 985.42,130.93 \
976.59,123.48"];
	fastq_dir -> salmon	[_draw_="c 7 -#000000 B 10 665.23 287.8 652.81 280.23 635.02 268.06 622.71 254 616.03 246.37 617.4 242.4 611.71 234 607.21 227.36 601.69 \
220.45 596.75 214.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 598.73 213.15 592.3 209.46 595.02 216.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 652.71 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="652.71,244",
		pos="e,591.3,208.32 665.23,287.8 652.81,280.23 635.02,268.06 622.71,254 616.03,246.37 617.4,242.4 611.71,234 607.21,227.36 601.69,220.45 \
596.75,214.61"];
	fastq_dir -> "salmon-mouse"	[_draw_="c 7 -#000000 B 13 658.36 287.57 637.77 279.77 605.56 268.44 576.71 262 562.29 258.78 522.22 263.26 510.71 254 503.37 248.1 510.64 \
240.38 503.71 234 492.23 223.43 477.88 216.06 462.94 210.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 463.93 208.68 456.52 208.91 462.46 213.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 540.71 242.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="540.71,244",
		pos="e,455.08,208.45 658.36,287.57 637.77,279.77 605.56,268.44 576.71,262 562.29,258.78 522.22,263.26 510.71,254 503.37,248.1 510.64,\
240.38 503.71,234 492.23,223.43 477.88,216.06 462.94,210.93"];
	fastq_dir -> trim_reads	[_draw_="c 7 -#000000 B 7 681.55 287.77 683.62 280.23 687.65 269.17 694.71 262 696.18 260.5 697.82 259.12 699.55 257.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 700.65 260.05 705.32 254.29 698.08 255.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 724.71 264.6 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="724.71,266.5",
		pos="e,706.61,253.5 681.55,287.77 683.62,280.23 687.65,269.17 694.71,262 696.18,260.5 697.82,259.12 699.55,257.85"];
	fastq_dir -> adjust_barcodes	[_draw_="c 7 -#000000 B 10 690.54 306.35 706.7 319.61 738.67 343.29 770.71 352.25 824.85 367.4 968.79 364.29 1023.71 352.25 1059.94 344.31 \
1098.28 324.35 1121.61 310.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1122.86 312.84 1127.62 307.15 1120.35 308.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 819.71 363.6 0 36 9 -fastq_dir ",
		label=fastq_dir,
		lp="819.71,365.5",
		pos="e,1128.9,306.38 690.54,306.35 706.7,319.61 738.67,343.29 770.71,352.25 824.85,367.4 968.79,364.29 1023.7,352.25 1059.9,344.31 1098.3,\
324.35 1121.6,310.73"];
	fastq_dir -> annotate_cells	[_draw_="c 7 -#000000 B 10 724.39 287.56 770.89 278.34 838.01 263.59 845.71 254 863.85 231.41 836.79 214.41 850.71 189 868 157.45 903.82 \
134.8 928.79 122.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 929.61 124.37 934.81 119.08 927.44 119.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 880.71 197.1 0 60 15 -orig_fastq_dirs ",
		label=orig_fastq_dirs,
		lp="880.71,199",
		pos="e,936.16,118.41 724.39,287.56 770.89,278.34 838.01,263.59 845.71,254 863.85,231.41 836.79,214.41 850.71,189 868,157.45 903.82,134.8 \
928.79,122.05"];
	organism -> salmon	[_draw_="c 7 -#000000 B 7 156.53 287.71 155.14 274.25 154.65 247.75 169.71 234 193.64 212.13 417.08 211.43 475.58 208.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 475.39 211.39 482.25 208.57 475.13 206.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 189.21 242.1 0 39 8 -organism ",
		label=organism,
		lp="189.21,244",
		pos="e,483.76,208.49 156.53,287.71 155.14,274.25 154.65,247.75 169.71,234 193.64,212.13 417.08,211.43 475.58,208.93"];
	organism -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 127.05 292.58 81.22 286.22 3.04 269.83 30.71 234 44.8 215.75 166.58 207.14 260.85 203.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.9 205.64 267.8 202.9 260.7 200.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 50.21 242.1 0 39 8 -organism ",
		label=organism,
		lp="50.209,244",
		pos="e,269.31,202.84 127.05,292.58 81.221,286.22 3.0438,269.83 30.709,234 44.801,215.75 166.58,207.14 260.85,203.19"];
	organism -> alevin_to_anndata	[_draw_="c 7 -#000000 B 10 126.86 296.89 99.42 296.17 59.46 291.23 31.71 271 10.34 255.42 -10.96 236.68 6.71 217 36.7 183.61 280.94 167.72 \
459.3 160.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.34 162.96 466.23 160.24 459.14 158.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 26.21 219.6 0 39 8 -organism ",
		label=organism,
		lp="26.209,221.5",
		pos="e,467.75,160.18 126.86,296.89 99.423,296.17 59.464,291.23 31.709,271 10.335,255.42 -10.963,236.68 6.709,217 36.699,183.61 280.94,\
167.72 459.3,160.51"];
	threads -> salmon	[_draw_="c 7 -#000000 B 7 527.72 287.6 542.27 280.71 560.89 269.55 571.71 254 579.33 243.05 582.21 228.09 583.26 216.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 585.68 217.11 583.66 209.97 580.79 216.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 595.71 242.1 0 32 7 -threads ",
		label=threads,
		lp="595.71,244",
		pos="e,583.75,208.46 527.72,287.6 542.27,280.71 560.89,269.55 571.71,254 579.33,243.05 582.21,228.09 583.26,216.69"];
	threads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 454.37 287.55 432.18 281.55 407.6 271.33 390.71 254 385.45 248.6 380.06 230.46 376.57 216.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 378.96 216.12 374.93 209.9 374.2 217.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 406.71 242.1 0 32 7 -threads ",
		label=threads,
		lp="406.71,244",
		pos="e,374.57,208.43 454.37,287.55 432.18,281.55 407.6,271.33 390.71,254 385.45,248.6 380.06,230.46 376.57,216.68"];
	threads -> trim_reads	[_draw_="c 7 -#000000 B 7 543.18 287.53 573.13 280.6 616.64 270.57 654.71 262 664.41 259.81 674.81 257.5 684.73 255.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 685.13 257.73 691.44 253.82 684.08 252.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670.71 264.6 0 32 7 -threads ",
		label=threads,
		lp="670.71,266.5",
		pos="e,692.92,253.5 543.18,287.53 573.13,280.6 616.64,270.57 654.71,262 664.41,259.81 674.81,257.5 684.73,255.31"];
	img_dir -> annotate_cells	[_draw_="c 7 -#000000 B 16 916.78 287.58 921.83 284.81 927.49 281.73 932.71 279 939.75 275.31 943.68 277.16 948.71 271 956.28 261.73 955.71 \
256.97 955.71 245 955.71 245 955.71 245 955.71 153 955.71 144.31 955.71 134.63 955.71 126.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 958.16 126.76 955.71 119.76 953.26 126.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 970.71 197.1 0 30 7 -img_dir ",
		label=img_dir,
		lp="970.71,199",
		pos="e,955.71,118.24 916.78,287.58 921.83,284.81 927.49,281.73 932.71,279 939.75,275.31 943.68,277.16 948.71,271 956.28,261.73 955.71,\
256.97 955.71,245 955.71,245 955.71,245 955.71,153 955.71,144.31 955.71,134.63 955.71,126.65"];
	salmon -> salmon_output	[_draw_="c 7 -#000000 B 7 543.02 189.5 519.76 183.86 490.39 175.38 465.71 164 413.69 140.02 359.13 99.52 332.43 78.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 334.16 76.76 327.15 74.33 331.11 80.6 ",
		pos="e,325.97,73.389 543.02,189.5 519.76,183.86 490.39,175.38 465.71,164 413.69,140.02 359.13,99.516 332.43,78.524"];
	salmon -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 596.55 189.5 605.81 183.38 618.48 175 629.01 168.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 630.15 170.22 634.63 164.31 627.44 166.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 641.71 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="641.71,176.5",
		pos="e,635.89,163.48 596.55,189.5 605.81,183.38 618.48,175 629.01,168.03"];
	"salmon-mouse" -> salmon_output	[_draw_="c 7 -#000000 B 4 369.14 189.68 359.87 168.03 334.85 109.67 322.63 81.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 324.88 80.18 319.87 74.71 320.38 82.11 ",
		pos="e,319.27,73.317 369.14,189.68 359.87,168.03 334.85,109.67 322.63,81.139"];
	"salmon-mouse" -> alevin_to_anndata	[_draw_="c 7 -#000000 B 4 427.24 189.5 472.98 182.38 538.32 172.2 586.17 164.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.26 167.21 592.8 163.71 585.5 162.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 554.71 174.6 0 40 10 -alevin_dir ",
		label=alevin_dir,
		lp="554.71,176.5",
		pos="e,594.29,163.48 427.24,189.5 472.98,182.38 538.32,172.2 586.17,164.74"];
	trim_reads -> salmon	[_draw_="c 7 -#000000 B 4 702.47 234.5 679.06 227.7 646.07 218.12 620.8 210.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 621.75 208.5 614.34 208.9 620.38 213.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 707.21 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="707.21,221.5",
		pos="e,612.89,208.48 702.47,234.5 679.06,227.7 646.07,218.12 620.8,210.78"];
	trim_reads -> "salmon-mouse"	[_draw_="c 7 -#000000 B 7 684.22 234.52 683.04 234.34 681.87 234.17 680.71 234 611.16 224.03 532.4 215.39 471.94 209.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 472.25 206.88 465.04 208.62 471.76 211.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 649.21 219.6 0 73 17 -trimmed_fastq_dir ",
		label=trimmed_fastq_dir,
		lp="649.21,221.5",
		pos="e,463.54,208.47 684.22,234.52 683.04,234.34 681.87,234.17 680.71,234 611.16,224.03 532.4,215.39 471.94,209.31"];
	adjust_barcodes -> trim_reads	[_draw_="c 7 -#000000 B 7 1087 287.53 1067.01 284.66 1044.38 281.54 1023.71 279 919.97 266.25 891.38 268.58 787.31 254.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 787.78 252.06 780.52 253.53 787.12 256.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 970.71 264.6 0 52 13 -adj_fastq_dir ",
		label=adj_fastq_dir,
		lp="970.71,266.5",
		pos="e,779.02,253.33 1087,287.53 1067,284.66 1044.4,281.54 1023.7,279 919.97,266.25 891.38,268.58 787.31,254.46"];
	adjust_barcodes -> annotate_cells	[_draw_="c 7 -#000000 B 10 1130.1 287.68 1117.51 278.82 1100.71 263.53 1100.71 245 1100.71 245 1100.71 245 1100.71 153 1100.71 137.08 1068.17 \
126.59 1033.92 119.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1034.48 117.58 1027.15 118.72 1033.59 122.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1131.21 197.1 0 61 13 -metadata_json ",
		label=metadata_json,
		lp="1131.2,199",
		pos="e,1025.7,118.44 1130.1,287.68 1117.5,278.82 1100.7,263.53 1100.7,245 1100.7,245 1100.7,245 1100.7,153 1100.7,137.08 1068.2,126.59 \
1033.9,119.96"];
	annotate_cells -> count_matrix_h5ad	[_draw_="c 7 -#000000 B 4 1031.77 99.5 1096.5 92.28 1189.36 81.9 1256.35 74.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1256.61 76.86 1263.3 73.65 1256.07 71.99 ",
		pos="e,1264.8,73.478 1031.8,99.505 1096.5,92.275 1189.4,81.904 1256.4,74.421"];
	alevin_to_anndata -> raw_count_matrix	[_draw_="c 7 -#000000 B 4 648.71 144.56 648.71 130.14 648.71 100.48 648.71 81.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 651.16 81.8 648.71 74.8 646.26 81.8 ",
		pos="e,648.71,73.284 648.71,144.56 648.71,130.14 648.71,100.48 648.71,81.727"];
	alevin_to_anndata -> genome_build_json	[_draw_="c 7 -#000000 B 7 667.82 144.61 695.51 132.78 748.61 111.27 795.71 99 809.96 95.29 886.81 83.4 944.37 74.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 944.65 77.16 951.21 73.7 943.92 72.32 ",
		pos="e,952.71,73.471 667.82,144.61 695.51,132.78 748.61,111.27 795.71,99 809.96,95.289 886.81,83.402 944.37,74.726"];
	alevin_to_anndata -> annotate_cells	[_draw_="c 7 -#000000 B 7 697.59 144.53 729.46 139.15 771.99 132.24 809.71 127 828.84 124.34 849.42 121.77 868.92 119.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 869.03 121.92 875.7 118.67 868.46 117.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 828.71 129.6 0 38 9 -h5ad_file ",
		label=h5ad_file,
		lp="828.71,131.5",
		pos="e,877.21,118.5 697.59,144.53 729.46,139.15 771.99,132.24 809.71,127 828.84,124.34 849.42,121.77 868.92,119.47"];
}