digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 662 278 662 0 ",
		bb="0,0,662,278",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 95 215 95 270 654 270 654 215 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 145 258 0 84 15 -Workflow Inputs ",
			bb="95,215,654,270",
			label="Workflow Inputs",
			lheight=0.15,
			lp="145,260.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		invert_geojson_mask	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 103.5 223.5 103.5 242.5 224.5 242.5 224.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 164 230.5 0 105 19 -invert_geojson_mask ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=invert_geojson_mask,
			pos="164,233",
			rects="103.5,223.5,224.5,242.5",
			width=1.6806];
		ometiff_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 228.5 223.5 228.5 242.5 329.5 242.5 329.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 230.5 0 85 17 -ometiff_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ometiff_directory,
			pos="279,233",
			rects="228.5,223.5,329.5,242.5",
			width=1.4028];
		output_filename	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 334 223.5 334 242.5 430 242.5 430 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 382 230.5 0 80 15 -output_filename ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_filename,
			pos="382,233",
			rects="334,223.5,430,242.5",
			width=1.3333];
		rgb	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 434 223.5 434 242.5 466 242.5 466 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 450 230.5 0 16 3 -rgb ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=rgb,
			pos="450,233",
			rects="434,223.5,466,242.5",
			width=0.44444];
		processes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 470.5 223.5 470.5 242.5 535.5 242.5 535.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 503 230.5 0 49 9 -processes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=processes,
			pos="503,233",
			rects="470.5,223.5,535.5,242.5",
			width=0.90278];
		downsample_type	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 540 223.5 540 242.5 646 242.5 646 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 593 230.5 0 90 15 -downsample_type ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=downsample_type,
			pos="593,233",
			rects="540,223.5,646,242.5",
			width=1.4722];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 378 8 378 63 521 63 521 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 432 15 0 92 16 -Workflow Outputs ",
			bb="378,8,521,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="432,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pyramid_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 386.5 35.5 386.5 54.5 461.5 54.5 461.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 424 42.5 0 59 11 -pyramid_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pyramid_dir,
			pos="424,45",
			rects="386.5,35.5,461.5,54.5",
			width=1.0417];
		n5_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 465.5 35.5 465.5 54.5 512.5 54.5 512.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 489 42.5 0 31 6 -n5_dir ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=n5_dir,
			pos="489,45",
			rects="465.5,35.5,512.5,54.5",
			width=0.65278];
	}
	crop_images	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 125.5 0 144.5 356 144.5 356 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 178 132.5 0 340 68 -Crop image to tissue selection, either detected or read from GeoJSON ",
		height=0.27778,
		label="Crop image to tissue selection, either detected or read from GeoJSON",
		pos="178,135",
		rects="0,125.5,356,144.5",
		width=4.9444];
	invert_geojson_mask -> crop_images	[_draw_="c 7 -#000000 B 7 137.96 223.59 110 213.11 71.64 193.67 88 170 95.17 159.63 105.93 152.42 117.55 147.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 118.22 149.77 123.86 144.97 116.45 145.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 131 178.1 0 86 19 -invert_geojson_mask ",
		label=invert_geojson_mask,
		lp="131,180",
		pos="e,125.27,144.42 137.96,223.59 110,213.11 71.637,193.67 88,170 95.167,159.63 105.93,152.42 117.55,147.41"];
	ometiff_directory -> crop_images	[_draw_="c 7 -#000000 B 7 251.42 223.6 225.82 215.21 190.45 201.89 182 190 174.35 179.24 173.89 164.03 175.03 152.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 177.44 152.96 175.98 145.69 172.59 152.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 216.5 178.1 0 69 17 -ometiff_directory ",
		label=ometiff_directory,
		lp="216.5,180",
		pos="e,176.19,144.19 251.42,223.6 225.82,215.21 190.45,201.89 182,190 174.35,179.24 173.89,164.03 175.03,152.5"];
	collect_ometiff_files	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 252.5 170.5 252.5 189.5 367.5 189.5 367.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 310 177.5 0 99 21 -collect_ometiff_files ",
		height=0.27778,
		pos="310,180",
		rects="252.5,170.5,367.5,189.5",
		width=1.5972];
	ometiff_directory -> collect_ometiff_files	[_draw_="c 7 -#000000 B 4 284.12 223.58 288.59 216.23 295.19 205.37 300.6 196.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.65 197.81 304.19 190.56 298.46 195.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 333.5 200.6 0 69 17 -ometiff_directory ",
		label=ometiff_directory,
		lp="333.5,202.5",
		pos="e,304.98,189.26 284.12,223.58 288.59,216.23 295.19,205.37 300.6,196.46"];
	convert_to_pyramid	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 399 80.5 399 99.5 513 99.5 513 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 456 87.5 0 98 18 -convert_to_pyramid ",
		height=0.27778,
		label=convert_to_pyramid,
		pos="456,90",
		rects="399,80.5,513,99.5",
		width=1.5833];
	output_filename -> convert_to_pyramid	[_draw_="c 7 -#000000 B 10 381.97 223.93 382.35 208.25 385.39 173.41 404 153 410.73 145.62 417.41 151.49 425 145 436.91 134.83 445.26 118.88 \
450.28 106.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 452.52 107.93 452.79 100.52 447.96 106.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 155.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="437.5,157.5",
		pos="e,453.34,99.111 381.97,223.93 382.35,208.25 385.39,173.41 404,153 410.73,145.62 417.41,151.49 425,145 436.91,134.83 445.26,118.88 \
450.28,106.95"];
	rgb -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 454.55 223.86 461.93 209.71 475.37 179.55 472 153 469.99 137.2 465.22 119.67 461.41 107.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 463.78 106.66 459.32 100.73 459.11 108.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 479 155.6 0 14 3 -rgb ",
		label=rgb,
		lp="479,157.5",
		pos="e,458.86,99.293 454.55,223.86 461.93,209.71 475.37,179.55 472,153 469.99,137.2 465.22,119.67 461.41,107.3"];
	processes -> convert_to_pyramid	[_draw_="c 7 -#000000 B 10 501.96 223.53 500 208.88 495.23 177.99 487 153 480.09 132.04 476.27 127.53 466 108 465.71 107.45 465.42 106.9 \
465.11 106.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 467.39 105.39 461.79 100.53 463.14 107.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 510.5 155.6 0 43 9 -processes ",
		label=processes,
		lp="510.5,157.5",
		pos="e,461.04,99.212 501.96,223.53 500,208.88 495.23,177.99 487,153 480.09,132.04 476.27,127.53 466,108 465.71,107.45 465.42,106.9 465.11,\
106.35"];
	downsample_type -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 587.64 223.63 577.81 208.62 555.81 176.46 533 153 514.79 134.26 491 115.88 474.72 104.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 476.58 102.39 469.46 100.3 473.73 106.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 577.5 155.6 0 75 15 -downsample_type ",
		label=downsample_type,
		lp="577.5,157.5",
		pos="e,468.23,99.417 587.64,223.63 577.81,208.62 555.81,176.46 533,153 514.79,134.26 491,115.88 474.72,104.06"];
	convert_to_pyramid -> pyramid_dir	[_draw_="c 7 -#000000 B 4 449.83 80.71 445.67 75.12 440.06 67.58 435.13 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 437.2 59.63 431.05 55.48 433.27 62.56 ",
		pos="e,430.15,54.265 449.83,80.709 445.67,75.117 440.06,67.579 435.13,60.957"];
	convert_to_pyramid -> n5_dir	[_draw_="c 7 -#000000 B 4 462.36 80.71 466.65 75.12 472.44 67.58 477.52 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 479.42 62.51 481.74 55.47 475.53 59.53 ",
		pos="e,482.66,54.265 462.36,80.709 466.65,75.117 472.44,67.579 477.52,60.957"];
	crop_images -> convert_to_pyramid	[_draw_="c 7 -#000000 B 7 218.34 125.52 245.33 120.04 281.69 113.02 314 108 339.02 104.12 366.64 100.63 390.82 97.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.03 100.28 397.71 97.05 390.48 95.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 337 110.6 0 46 12 -ometiff_file ",
		label=ometiff_file,
		lp="337,112.5",
		pos="e,399.22,96.881 218.34,125.52 245.33,120.04 281.69,113.02 314,108 339.02,104.12 366.64,100.63 390.82,97.838"];
	collect_ometiff_files -> convert_to_pyramid	[_draw_="c 7 -#000000 B 10 339.43 170.66 344.03 168.4 348.44 165.56 352 162 364.55 149.46 354.33 137.42 367 125 377.77 114.45 392.14 107.1 \
406.2 102.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 406.66 104.45 412.51 99.9 405.1 99.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 397.5 133.1 0 61 14 -base_directory ",
		label=base_directory,
		lp="397.5,135",
		pos="e,413.95,99.415 339.43,170.66 344.03,168.4 348.44,165.56 352,162 364.55,149.46 354.33,137.42 367,125 377.77,114.45 392.14,107.1 \
406.2,102.02"];
	collect_ometiff_files -> crop_images	[_draw_="c 7 -#000000 B 7 262.49 170.5 252.31 168.17 241.7 165.34 232 162 221.39 158.35 210.14 153.16 200.67 148.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.87 146.24 194.53 145.2 199.62 150.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255 155.6 0 46 12 -ometiff_file ",
		label=ometiff_file,
		lp="255,157.5",
		pos="e,193.19,144.5 262.49,170.5 252.31,168.17 241.7,165.34 232,162 221.39,158.35 210.14,153.16 200.67,148.38"];
	collect_ometiff_files -> crop_images	[_draw_="c 7 -#000000 B 7 301.23 170.65 294.56 164.78 284.87 157.25 275 153 269.26 150.53 263.18 148.42 256.97 146.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.92 144.33 250.52 144.88 256.65 149.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 320.5 155.6 0 61 14 -base_directory ",
		label=base_directory,
		lp="320.5,157.5",
		pos="e,249.06,144.49 301.23,170.65 294.56,164.78 284.87,157.25 275,153 269.26,150.53 263.18,148.42 256.97,146.61"];
}