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		lp="439.5,247.5",
		pos="e,443.1,234.47 293.7,268.5 321.38,261.23 362.69,250.75 399,243 410.58,240.53 423.01,238.13 434.94,235.94"];
	downstream_analysis	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 906 125.5 906 144.5 1118 144.5 1118 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1012 132.5 0 196 36 -Downstream analysis for RNA and ATAC ",
		height=0.27778,
		label="Downstream analysis for RNA and ATAC",
		pos="1012,135",
		rects="906,125.5,1118,144.5",
		width=2.9444];
	downstream_analysis -> rna_embedding_result	[_draw_="c 7 -#000000 B 7 1018.37 125.92 1029.62 112.24 1054.47 84.67 1082 71 1093.18 65.45 1118.19 60.14 1143.38 55.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1143.56 58.31 1150.06 54.75 1142.75 53.47 ",
		pos="e,1151.6,54.498 1018.4,125.92 1029.6,112.24 1054.5,84.665 1082,71 1093.2,65.45 1118.2,60.14 1143.4,55.853"];
	downstream_analysis -> muon_processed_h5mu	[_draw_="c 7 -#000000 B 7 1035.15 125.62 1051.22 120.04 1073.21 112.86 1093 108 1193.15 83.4 1310.89 65.6 1386.66 55.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1386.65 58.02 1393.27 54.67 1386.01 53.16 ",
		pos="e,1394.8,54.477 1035.1,125.62 1051.2,120.04 1073.2,112.86 1093,108 1193.2,83.398 1310.9,65.599 1386.7,55.545"];
	downstream_analysis -> joint_embedding_result	[_draw_="c 7 -#000000 B 4 971.25 125.56 892.73 109.3 720.78 73.7 636.1 56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.77 53.8 629.42 54.78 635.78 58.6 ",
		pos="e,627.94,54.477 971.25,125.56 892.73,109.3 720.78,73.7 636.1,56.167"];
	downstream_analysis -> atac_embedding_result	[_draw_="c 7 -#000000 B 4 992.44 125.56 955.81 109.76 876.8 75.68 835.08 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 836.29 55.53 828.89 55.01 834.35 60.03 ",
		pos="e,827.5,54.412 992.44,125.56 955.81,109.76 876.8,75.68 835.08,57.683"];
	downstream_analysis -> mofa_model	[_draw_="c 7 -#000000 B 4 1012 125.56 1012 111.14 1012 81.48 1012 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.45 62.8 1012 55.8 1009.55 62.8 ",
		pos="e,1012,54.284 1012,125.56 1012,111.14 1012,81.476 1012,62.727"];
	downstream_analysis -> rna_qc	[_draw_="c 7 -#000000 B 10 1055.57 125.56 1066.86 123.08 1078.94 120.18 1090 117 1101.35 113.74 1103.46 110.52 1115 108 1159.08 98.38 1209.7 \
94.13 1249.11 92.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1248.95 94.75 1255.84 92 1248.74 89.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1162.5 110.6 0 95 21 -secondary_matrix_path ",
		label=secondary_matrix_path,
		lp="1162.5,112.5",
		pos="e,1257.3,91.935 1055.6,125.56 1066.9,123.08 1078.9,120.18 1090,117 1101.3,113.74 1103.5,110.52 1115,108 1159.1,98.376 1209.7,94.133 \
1249.1,92.292"];
	rna_quantification -> rna_qc	[_draw_="c 7 -#000000 B 7 1202.91 215.53 1208.09 213.13 1213.41 210.28 1218 207 1257.68 178.65 1291.19 130.71 1306.72 106.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1308.69 107.76 1310.32 100.52 1304.53 105.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1313.5 155.6 0 83 19 -primary_matrix_path ",
		label=primary_matrix_path,
		lp="1313.5,157.5",
		pos="e,1311.1,99.237 1202.9,215.53 1208.1,213.13 1213.4,210.28 1218,207 1257.7,178.65 1291.2,130.71 1306.7,106.28"];
	rna_quantification -> rna_qc	[_draw_="c 7 -#000000 B 10 1197.63 215.68 1201.17 213.31 1204.55 210.42 1207 207 1221.39 186.95 1205.72 173.14 1220 153 1236.56 129.65 1264.95 \
112.93 1286.57 102.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1287.44 105.07 1292.82 99.96 1285.43 100.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1242.5 155.6 0 45 10 -salmon_dir ",
		label=salmon_dir,
		lp="1242.5,157.5",
		pos="e,1294.2,99.334 1197.6,215.68 1201.2,213.31 1204.5,210.42 1207,207 1221.4,186.95 1205.7,173.14 1220,153 1236.6,129.65 1264.9,112.93 \
1286.6,102.78"];
	rna_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 1128.03 222.1 1092.51 220.05 1044.53 215.8 1003 207 990.63 204.38 988.25 201.17 976 198 966.18 195.46 955.67 193.14 \
945.4 191.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 946.07 188.71 938.73 189.78 945.13 193.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1052 200.6 0 98 21 -rna_genome_build_path ",
		label=rna_genome_build_path,
		lp="1052,202.5",
		pos="e,937.24,189.49 1128,222.1 1092.5,220.05 1044.5,215.8 1003,207 990.63,204.38 988.25,201.17 976,198 966.18,195.46 955.67,193.14 945.4,\
191.08"];
	rna_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 1141.72 215.56 1132.82 213.17 1123.48 210.3 1115 207 1107.03 203.9 1106.21 200.39 1098 198 1074.22 191.08 1017.3 \
186.75 968.28 184.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 968.49 181.75 961.37 183.85 968.24 186.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1162.5 200.6 0 95 21 -count_matrix_h5ad_rna ",
		label=count_matrix_h5ad_rna,
		lp="1162.5,202.5",
		pos="e,959.86,183.77 1141.7,215.56 1132.8,213.17 1123.5,210.3 1115,207 1107,203.9 1106.2,200.39 1098,198 1074.2,191.08 1017.3,186.75 \
968.28,184.2"];
	rna_qc -> scanpy_qc_results	[_draw_="c 7 -#000000 B 7 1374.87 85.14 1433.95 80.94 1527.49 73.41 1608 63 1623.18 61.04 1639.58 58.45 1654.61 55.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1654.84 58.33 1661.32 54.72 1654.01 53.5 ",
		pos="e,1662.8,54.466 1374.9,85.14 1434,80.941 1527.5,73.411 1608,63 1623.2,61.037 1639.6,58.448 1654.6,55.884"];
	rna_qc -> rna_qc_report	[_draw_="c 7 -#000000 B 7 1374.88 88 1466.92 85.95 1650.35 79.95 1805 63 1821.18 61.23 1838.7 58.58 1854.58 55.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1854.74 58.35 1861.22 54.75 1853.91 53.52 ",
		pos="e,1862.7,54.491 1374.9,87.997 1466.9,85.95 1650.3,79.945 1805,63 1821.2,61.227 1838.7,58.576 1854.6,55.893"];
	consolidate_counts -> muon_original_h5mu	[_draw_="c 7 -#000000 B 4 850.81 170.58 756.23 147.28 491.25 82.02 387.46 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 388.24 54.13 380.86 54.83 387.07 58.88 ",
		pos="e,379.39,54.47 850.81,170.58 756.23,147.28 491.25,82.021 387.46,56.457"];
	consolidate_counts -> downstream_analysis	[_draw_="c 7 -#000000 B 4 910.09 170.5 929.83 163.82 957.51 154.45 979.04 147.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 979.68 149.53 985.53 144.96 978.11 144.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 984.5 155.6 0 51 10 -mudata_raw ",
		label=mudata_raw,
		lp="984.5,157.5",
		pos="e,986.96,144.48 910.09,170.5 929.83,163.82 957.51,154.45 979.04,147.16"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 548.81 223.96 612.33 223.27 712.78 220.06 748 207 754.25 204.68 753.83 200.53 760 198 773.04 192.65 787.43 188.91 \
801.66 186.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 802.01 188.75 808.51 185.17 801.21 183.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 820.5 200.6 0 121 28 -cell_by_bin_matrix_h5ad_atac ",
		label=cell_by_bin_matrix_h5ad_atac,
		lp="820.5,202.5",
		pos="e,810.01,184.92 548.81,223.96 612.33,223.27 712.78,220.06 748,207 754.25,204.68 753.83,200.53 760,198 773.04,192.65 787.43,188.91 \
801.66,186.32"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 7 496.73 215.65 499.18 209.62 503.42 201.87 510 198 522.37 190.72 695.28 185.41 801.94 182.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 801.68 185.26 808.62 182.64 801.56 180.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 561.5 200.6 0 103 22 -atac_genome_build_path ",
		label=atac_genome_build_path,
		lp="561.5,202.5",
		pos="e,810.13,182.61 496.73,215.65 499.18,209.62 503.42,201.87 510,198 522.37,190.72 695.28,185.41 801.94,182.8"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 548.95 219.55 573.53 216.83 599.34 212.75 610 207 614.71 204.46 613.19 200.35 618 198 634.28 190.06 729.85 185.48 \
802.04 183.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 801.85 185.58 808.77 182.91 801.69 180.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 682.5 200.6 0 129 29 -cell_by_gene_matrix_h5ad_atac ",
		label=cell_by_gene_matrix_h5ad_atac,
		lp="682.5,202.5",
		pos="e,810.28,182.86 548.95,219.55 573.53,216.83 599.34,212.75 610,207 614.71,204.46 613.19,200.35 618,198 634.28,190.06 729.85,185.48 \
802.04,183.12"];
	analyze_with_ArchR	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 275.5 170.5 275.5 189.5 390.5 189.5 390.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 333 177.5 0 99 18 -analyze_with_ArchR ",
		height=0.27778,
		pos="333,180",
		rects="275.5,170.5,390.5,189.5",
		width=1.5972];
	atac_quantification -> analyze_with_ArchR	[_draw_="c 7 -#000000 B 7 439.09 224.1 401.41 223.03 355.67 219.14 341 207 338.09 204.59 336.22 201.16 335.02 197.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.44 197.15 333.59 190.81 332.65 198.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 368 200.6 0 54 13 -archr_project ",
		label=archr_project,
		lp="368,202.5",
		pos="e,333.27,189.33 439.09,224.1 401.41,223.03 355.67,219.14 341,207 338.09,204.59 336.22,201.16 335.02,197.57"];
	atac_quantification -> analyze_with_ArchR	[_draw_="c 7 -#000000 B 7 439.03 223.15 382.35 221.7 300.88 217.74 291 207 286.14 201.72 288.95 197.11 294.93 193.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.97 195.52 301.11 190.17 293.76 191.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 312.5 200.6 0 43 10 -image_file ",
		label=image_file,
		lp="312.5,202.5",
		pos="e,302.46,189.48 439.03,223.15 382.35,221.7 300.88,217.74 291,207 286.14,201.72 288.95,197.11 294.93,193.3"];
	atac_qc	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 372 125.5 372 144.5 426 144.5 426 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 399 132.5 0 38 7 -atac_qc ",
		height=0.27778,
		pos="399,135",
		rects="372,125.5,426,144.5",
		width=0.75];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 7 439.4 215.85 424.78 210.87 410.65 202.85 402 190 394.63 179.06 394.45 163.87 395.78 152.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.18 152.91 396.83 145.62 393.34 152.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 419.5 178.1 0 35 8 -bam_file ",
		label=bam_file,
		lp="419.5,180",
		pos="e,397.07,144.12 439.4,215.85 424.78,210.87 410.65,202.85 402,190 394.63,179.06 394.45,163.87 395.78,152.39"];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 10 478.46 215.75 468.06 209.66 454.57 200.61 445 190 438.21 182.46 440.15 178.07 434 170 428.45 162.72 421.36 155.54 \
415.01 149.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 416.96 148.12 410.12 145.27 413.69 151.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 467 178.1 0 44 9 -bam_index ",
		label=bam_index,
		lp="467,180",
		pos="e,408.99,144.26 478.46,215.75 468.06,209.66 454.57,200.61 445,190 438.21,182.46 440.15,178.07 434,170 428.45,162.72 421.36,155.54 \
415.01,149.66"];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 7 495.15 215.69 496.27 204.15 496.51 183.19 486 170 473.29 154.05 452.08 145.57 433.78 141.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 434.46 138.7 427.1 139.59 433.41 143.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 529 178.1 0 70 16 -cell_by_bin_h5ad ",
		label=cell_by_bin_h5ad,
		lp="529,180",
		pos="e,425.62,139.26 495.15,215.69 496.27,204.15 496.51,183.19 486,170 473.29,154.05 452.08,145.57 433.78,141.06"];
	analyze_with_ArchR -> atac_qc	[_draw_="c 7 -#000000 B 7 339.29 170.87 343.96 165.26 350.76 157.94 358 153 360.57 151.25 363.35 149.62 366.21 148.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.23 150.36 372.5 145.15 365.13 145.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 376.5 155.6 0 37 9 -peak_file ",
		label=peak_file,
		lp="376.5,157.5",
		pos="e,373.87,144.5 339.29,170.87 343.96,165.26 350.76,157.94 358,153 360.57,151.25 363.35,149.62 366.21,148.13"];
	atac_qc -> atac_qc_report	[_draw_="c 7 -#000000 B 4 372.19 125.72 320.55 109.78 207.29 74.81 149.48 56.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 150.22 54.62 142.81 54.9 148.78 59.3 ",
		pos="e,141.37,54.45 372.19,125.72 320.55,109.78 207.29,74.807 149.48,56.955"];
}