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		pos="e,1475.8,234.43 1572.2,268.58 1548,260.01 1510.4,246.7 1483.7,237.24"];
	consolidate_counts -> muon_original_h5mu	[_draw_="c 7 -#000000 B 4 1099 170.58 1207.22 147.21 1510.99 81.63 1628.63 56.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1628.97 58.66 1635.29 54.79 1627.93 53.87 ",
		pos="e,1636.8,54.47 1099,170.58 1207.2,147.21 1511,81.628 1628.6,56.228"];
	downstream_analysis	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 926 125.5 926 144.5 1138 144.5 1138 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1032 132.5 0 196 36 -Downstream analysis for RNA and ATAC ",
		height=0.27778,
		label="Downstream analysis for RNA and ATAC",
		pos="1032,135",
		rects="926,125.5,1138,144.5",
		width=2.9444];
	consolidate_counts -> downstream_analysis	[_draw_="c 7 -#000000 B 4 1054.6 170.71 1051.04 165.24 1046.26 157.9 1042.02 151.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1044.08 150.06 1038.21 145.53 1039.97 152.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1073.5 155.6 0 51 10 -mudata_raw ",
		label=mudata_raw,
		lp="1073.5,157.5",
		pos="e,1037.4,144.27 1054.6,170.71 1051,165.24 1046.3,157.9 1042,151.38"];
	rna_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 4 601.71 219.64 689.98 212.2 870.46 196.98 976.7 188.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 976.89 190.47 983.65 187.44 976.47 185.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 899 200.6 0 98 21 -rna_genome_build_path ",
		label=rna_genome_build_path,
		lp="899,202.5",
		pos="e,985.16,187.31 601.71,219.64 689.98,212.2 870.46,196.98 976.7,188.02"];
	rna_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 7 579.94 215.53 602.56 209.52 634.47 201.86 663 198 693.11 193.93 869.77 187.41 977.03 183.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 976.84 186.2 983.75 183.51 976.67 181.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 710.5 200.6 0 95 21 -count_matrix_h5ad_rna ",
		label=count_matrix_h5ad_rna,
		lp="710.5,202.5",
		pos="e,985.27,183.46 579.94,215.53 602.56,209.52 634.47,201.86 663,198 693.11,193.93 869.77,187.41 977.03,183.74"];
	rna_quantification -> rna_qc	[_draw_="c 7 -#000000 B 7 525.66 215.66 503.02 206.44 470.64 189.2 456 162 445.03 141.63 464.63 118.69 480.59 104.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 481.75 106.77 485.52 100.38 478.59 103.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 497.5 155.6 0 83 19 -primary_matrix_path ",
		label=primary_matrix_path,
		lp="497.5,157.5",
		pos="e,486.67,99.398 525.66,215.66 503.02,206.44 470.64,189.2 456,162 445.03,141.63 464.63,118.69 480.59,104.54"];
	rna_quantification -> rna_qc	[_draw_="c 7 -#000000 B 7 549.34 215.86 548.04 202.38 544.5 174.77 536 153 529.31 135.86 517.92 118.14 509.35 106.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 511.44 104.76 505.34 100.54 507.47 107.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 561.5 155.6 0 45 10 -salmon_dir ",
		label=salmon_dir,
		lp="561.5,157.5",
		pos="e,504.45,99.316 549.34,215.86 548.04,202.38 544.5,174.77 536,153 529.31,135.86 517.92,118.14 509.35,106.06"];
	downstream_analysis -> rna_embedding_result	[_draw_="c 7 -#000000 B 13 1058.94 125.58 1067.58 122.86 1077.2 119.82 1086 117 1086.98 116.69 1225.99 71.2 1227 71 1271.16 62.18 1283.28 \
68.25 1328 63 1344.84 61.02 1363.06 58.38 1379.7 55.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1379.71 58.25 1386.24 54.73 1378.94 53.41 ",
		pos="e,1387.7,54.493 1058.9,125.58 1067.6,122.86 1077.2,119.82 1086,117 1087,116.69 1226,71.202 1227,71 1271.2,62.178 1283.3,68.251 1328,\
63 1344.8,61.023 1363.1,58.381 1379.7,55.77"];
	downstream_analysis -> muon_processed_h5mu	[_draw_="c 7 -#000000 B 7 1011.55 125.54 997.09 119.85 977.13 112.58 959 108 898.08 92.61 727.88 68.76 629.24 55.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 629.86 53.18 622.6 54.69 629.21 58.04 ",
		pos="e,621.1,54.486 1011.6,125.54 997.09,119.85 977.13,112.58 959,108 898.08,92.614 727.88,68.756 629.24,55.572"];
	downstream_analysis -> joint_embedding_result	[_draw_="c 7 -#000000 B 10 1029.79 125.78 1025.58 111.88 1015 83.99 995 71 981.68 62.35 939.74 65.07 924 63 907.35 60.81 889.36 58.21 872.73 \
55.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 873.47 53.34 866.18 54.72 872.74 58.19 ",
		pos="e,864.69,54.493 1029.8,125.78 1025.6,111.88 1015,83.988 995,71 981.68,62.352 939.74,65.07 924,63 907.35,60.81 889.36,58.21 872.73,\
55.71"];
	downstream_analysis -> atac_embedding_result	[_draw_="c 7 -#000000 B 4 1032 125.56 1032 111.14 1032 81.48 1032 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1034.45 62.8 1032 55.8 1029.55 62.8 ",
		pos="e,1032,54.284 1032,125.56 1032,111.14 1032,81.476 1032,62.727"];
	downstream_analysis -> mofa_model	[_draw_="c 7 -#000000 B 4 1051.56 125.56 1088.19 109.76 1167.2 75.68 1208.92 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.65 60.03 1215.11 55.01 1207.71 55.53 ",
		pos="e,1216.5,54.412 1051.6,125.56 1088.2,109.76 1167.2,75.68 1208.9,57.683"];
	downstream_analysis -> rna_qc	[_draw_="c 7 -#000000 B 7 954.11 125.52 902.03 120.03 831.96 113.01 770 108 700.25 102.36 620.3 97.56 565.22 94.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 565.57 92.08 558.45 94.14 565.31 96.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 910.5 110.6 0 95 21 -secondary_matrix_path ",
		label=secondary_matrix_path,
		lp="910.5,112.5",
		pos="e,556.94,94.062 954.11,125.52 902.03,120.03 831.96,113.01 770,108 700.25,102.36 620.3,97.563 565.22,94.517"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 7 1397.17 224.33 1299.47 224.51 1102.92 222.85 1076 207 1071.99 204.64 1068.85 200.84 1066.46 196.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1068.71 195.89 1063.4 190.71 1064.31 198.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1140.5 200.6 0 129 29 -cell_by_gene_matrix_h5ad_atac ",
		label=cell_by_gene_matrix_h5ad_atac,
		lp="1140.5,202.5",
		pos="e,1062.7,189.35 1397.2,224.33 1299.5,224.51 1102.9,222.85 1076,207 1072,204.64 1068.9,200.84 1066.5,196.87"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 1397.19 223.65 1337.54 222.64 1246.36 219.08 1214 207 1207.75 204.67 1208.19 200.48 1202 198 1183.65 190.64 1162.98 \
186.22 1143.2 183.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1143.54 181.18 1136.29 182.78 1142.95 186.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1274.5 200.6 0 121 28 -cell_by_bin_matrix_h5ad_atac ",
		label=cell_by_bin_matrix_h5ad_atac,
		lp="1274.5,202.5",
		pos="e,1134.8,182.6 1397.2,223.65 1337.5,222.64 1246.4,219.08 1214,207 1207.8,204.67 1208.2,200.48 1202,198 1183.7,190.64 1163,186.22 \
1143.2,183.61"];
	atac_quantification -> consolidate_counts	[_draw_="c 7 -#000000 B 10 1397.12 218.7 1381.01 216.17 1363.54 212.45 1348 207 1340.3 204.3 1339.82 200.31 1332 198 1297.9 187.92 1210.06 \
183.82 1143.35 182.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1143.48 179.7 1136.43 181.98 1143.37 184.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1399.5 200.6 0 103 22 -atac_genome_build_path ",
		label=atac_genome_build_path,
		lp="1399.5,202.5",
		pos="e,1134.9,181.94 1397.1,218.7 1381,216.17 1363.5,212.45 1348,207 1340.3,204.3 1339.8,200.31 1332,198 1297.9,187.92 1210.1,183.82 \
1143.4,182.15"];
	analyze_with_ArchR	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1442.5 170.5 1442.5 189.5 1557.5 189.5 1557.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1500 177.5 0 99 18 -analyze_with_ArchR ",
		height=0.27778,
		pos="1500,180",
		rects="1442.5,170.5,1557.5,189.5",
		width=1.5972];
	atac_quantification -> analyze_with_ArchR	[_draw_="c 7 -#000000 B 7 1451.25 215.89 1451.17 210.29 1451.99 202.98 1456 198 1457.17 196.55 1458.48 195.22 1459.89 194.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1461.02 196.2 1465.41 190.23 1458.25 192.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1483 200.6 0 54 13 -archr_project ",
		label=archr_project,
		lp="1483,202.5",
		pos="e,1466.7,189.37 1451.3,215.89 1451.2,210.29 1452,202.98 1456,198 1457.2,196.55 1458.5,195.22 1459.9,194.01"];
	atac_quantification -> analyze_with_ArchR	[_draw_="c 7 -#000000 B 7 1497.31 215.61 1501.05 213.36 1504.39 210.54 1507 207 1509.12 204.12 1509.35 200.64 1508.63 197.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1510.99 196.49 1506.2 190.82 1506.41 198.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1529.5 200.6 0 43 10 -image_file ",
		label=image_file,
		lp="1529.5,202.5",
		pos="e,1505.7,189.41 1497.3,215.61 1501.1,213.36 1504.4,210.54 1507,207 1509.1,204.12 1509.4,200.64 1508.6,197.18"];
	atac_qc	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1617 125.5 1617 144.5 1671 144.5 1671 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1644 132.5 0 38 7 -atac_qc ",
		height=0.27778,
		pos="1644,135",
		rects="1617,125.5,1671,144.5",
		width=0.75];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 10 1506.87 219.22 1526 216.61 1544.56 212.71 1552 207 1566.36 195.99 1556.17 182.76 1569 170 1580.1 158.96 1595.43 \
151.14 1609.33 145.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1610.12 148.13 1615.89 143.46 1608.47 143.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1604 178.1 0 70 16 -cell_by_bin_h5ad ",
		label=cell_by_bin_h5ad,
		lp="1604,180",
		pos="e,1617.3,142.95 1506.9,219.22 1526,216.61 1544.6,212.71 1552,207 1566.4,195.99 1556.2,182.76 1569,170 1580.1,158.96 1595.4,151.14 \
1609.3,145.81"];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 7 1506.85 220.94 1554.59 217.05 1618.78 208.48 1636 190 1645.27 180.06 1646.66 164.3 1646.1 152.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1648.56 152.42 1645.51 145.66 1643.68 152.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1667 178.1 0 44 9 -bam_index ",
		label=bam_index,
		lp="1667,180",
		pos="e,1645.4,144.15 1506.8,220.94 1554.6,217.05 1618.8,208.48 1636,190 1645.3,180.06 1646.7,164.3 1646.1,152.37"];
	atac_quantification -> atac_qc	[_draw_="c 7 -#000000 B 7 1506.89 224.4 1569.54 223.51 1666.2 217.55 1688 190 1699.29 175.73 1682.1 159.57 1666.01 148.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1667.76 146.89 1660.55 145.18 1665.12 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1708.5 178.1 0 35 8 -bam_file ",
		label=bam_file,
		lp="1708.5,180",
		pos="e,1659.3,144.36 1506.9,224.4 1569.5,223.51 1666.2,217.55 1688,190 1699.3,175.73 1682.1,159.57 1666,148.68"];
	rna_qc -> rna_qc_report	[_draw_="c 7 -#000000 B 4 461.25 80.5 431.19 73.56 388.57 63.7 356.57 56.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.52 54.01 350.15 54.82 356.41 58.78 ",
		pos="e,348.67,54.478 461.25,80.505 431.19,73.555 388.57,63.702 356.57,56.303"];
	rna_qc -> scanpy_qc_results	[_draw_="c 7 -#000000 B 7 439.11 84.91 381.58 80.61 291.58 73.07 214 63 198.75 61.02 182.28 58.44 167.15 55.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.7 53.5 160.39 54.73 166.88 58.33 ",
		pos="e,158.9,54.477 439.11,84.912 381.58,80.61 291.58,73.065 214,63 198.75,61.021 182.28,58.439 167.15,55.888"];
	analyze_with_ArchR -> atac_qc	[_draw_="c 7 -#000000 B 7 1505.75 170.54 1510.26 164.61 1517.09 157.05 1525 153 1539.2 145.72 1578.89 141.08 1608.56 138.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1608.73 140.95 1615.51 137.94 1608.33 136.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1543.5 155.6 0 37 9 -peak_file ",
		label=peak_file,
		lp="1543.5,157.5",
		pos="e,1617,137.81 1505.7,170.54 1510.3,164.61 1517.1,157.05 1525,153 1539.2,145.72 1578.9,141.08 1608.6,138.51"];
	atac_qc -> atac_qc_report	[_draw_="c 7 -#000000 B 4 1669.22 125.56 1717.03 109.56 1820.85 74.83 1874.08 57.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1874.56 59.44 1880.42 54.89 1873.01 54.79 ",
		pos="e,1881.9,54.412 1669.2,125.56 1717,109.56 1820.8,74.827 1874.1,57.017"];
}