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	bulk_process	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 384 170.5 384 189.5 464 189.5 464 170.5 ",
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		label=bulk_process,
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	threads -> bulk_process	[_draw_="c 7 -#000000 B 13 541.6 403.53 536.53 400.57 530.62 397.38 525 395 483.32 377.34 429 406.26 429 361 429 361 429 361 429 224 429 \
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	fastqc	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 442 350.5 442 369.5 692 369.5 692 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 567 357.5 0 234 49 -Runs fastQC on each fastq file in fastq directory ",
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 565.49 378.11 564.71 370.74 560.72 376.99 ",
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		lp="578,382.5",
		pos="e,565.06,369.26 556.98,403.58 558.64,396.52 561.06,386.24 563.11,377.55"];
	encode_blacklist -> bulk_process	[_draw_="c 7 -#000000 B 10 235.06 403.57 254.17 395.91 276 382.45 276 361 276 361 276 361 276 224 276 202.8 332.69 191.37 375.9 185.74 ",
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	sequence_directory -> fastqc	[_draw_="c 7 -#000000 B 7 739.07 403.55 729.23 400.75 718.16 397.66 708 395 675.97 386.6 639.63 377.86 611.87 371.34 ",
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	sequence_directory -> gather_sequence_bundles	[_draw_="c 7 -#000000 B 4 768 403.58 768 396.52 768 386.24 768 377.55 ",
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		fillcolor="#F3CEA1",
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		pos="e,542.67,54.284 436.56,125.56 459.61,110.08 508.76,77.061 535.94,58.802"];
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		pos="e,260.3,54.412 406.64,125.56 374.35,109.86 304.92,76.105 267.73,58.021"];
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.28 55.13 349.86 54.98 355.57 59.72 ",
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		pos="e,414.04,54.284 422.95,125.56 421.14,111.14 417.43,81.476 415.09,62.727"];
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		pos="e,480.16,54.284 429.94,125.56 440.43,110.67 462.35,79.565 475.46,60.963"];
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		height=0.27778,
		pos="692,90",
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	bulk_analysis -> qc_measures	[_draw_="c 7 -#000000 B 4 465.29 127.38 513.27 119.68 592.37 106.99 643.31 98.81 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 600.5 110.6 0 37 9 -peak_file ",
		label=peak_file,
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		pos="e,651.54,97.491 465.29,127.38 513.27,119.68 592.37,106.99 643.31,98.813"];
	bulk_process -> bam_file	[_draw_="c 7 -#000000 B 4 408.3 170.68 365.53 148.02 246.77 85.09 196.24 58.32 ",
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		pos="e,189.02,54.488 408.3,170.68 365.53,148.02 246.77,85.091 196.24,58.315"];
	bulk_process -> bulk_analysis	[_draw_="c 7 -#000000 B 4 424 170.71 424 165.59 424 158.85 424 152.67 ",
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		label=bam_file,
		lp="441.5,157.5",
		pos="e,424,144.27 424,170.71 424,165.59 424,158.85 424,152.67"];
	fastqc -> fastqc_dir	[_draw_="c 7 -#000000 B 10 567 350.76 567 342.1 567 328.09 567 316 567 316 567 316 567 89 567 79.5 586.8 67.14 604.19 58.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 604.94 60.48 610.09 55.14 602.73 56.1 ",
		pos="e,611.44,54.462 567,350.76 567,342.1 567,328.09 567,316 567,316 567,316 567,89 567,79.499 586.8,67.138 604.19,58.109"];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 702 267.5 0 59 9 -merge_bam ",
		height=0.27778,
		pos="702,270",
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		width=1.0417];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 692 222.5 0 97 16 -index_merged_bam ",
		height=0.27778,
		pos="692,225",
		rects="635.5,215.5,748.5,234.5",
		width=1.5694];
	merge_bam -> index_merged_bam	[_draw_="c 7 -#000000 B 4 700.07 260.71 698.85 255.47 697.24 248.53 695.78 242.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 698.24 242 694.27 235.74 693.46 243.11 ",
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		label=merged_bam_file,
		lp="732,247.5",
		pos="e,693.92,234.27 700.07,260.71 698.85,255.47 697.24,248.53 695.78,242.24"];
	index_merged_bam -> bulk_process	[_draw_="c 7 -#000000 B 4 639.05 215.5 590.41 207.7 518.95 196.23 471.96 188.69 ",
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		label=sorted_merged_bam,
		lp="624,202.5",
		pos="e,463.77,187.38 639.05,215.5 590.41,207.7 518.95,196.23 471.96,188.69"];
	index_merged_bam -> qc_measures	[_draw_="c 7 -#000000 B 7 702.91 215.7 718.07 203.08 742.79 177.89 735 153 729.31 134.82 716.21 117.28 705.95 105.53 ",
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		label=bam_file,
		lp="753.5,157.5",
		pos="e,700.31,99.313 702.91,215.7 718.07,203.08 742.79,177.89 735,153 729.31,134.82 716.21,117.28 705.95,105.53"];
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		label=bam_index,
		lp="712,157.5",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 791 335.6 0 52 12 -input_fastq2 ",
		label=input_fastq2,
		lp="791,337.5",
		pos="e,747.6,324.37 767.42,350.72 766.6,345.04 764.65,337.7 760,333 758.34,331.32 756.52,329.81 754.58,328.45"];
	gather_sequence_bundles -> align_paired_end	[_draw_="c 7 -#000000 B 7 716.68 350.6 712.98 348.32 709.66 345.5 707 342 704.91 339.25 704.07 335.82 703.92 332.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 706.34 332.77 704.51 325.58 701.46 332.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733 335.6 0 52 12 -input_fastq1 ",
		label=input_fastq1,
		lp="733,337.5",
		pos="e,704.65,324.08 716.68,350.6 712.98,348.32 709.66,345.5 707,342 704.91,339.25 704.07,335.82 703.92,332.36"];
	align_paired_end -> merge_bam	[_draw_="c 7 -#000000 B 4 706.04 305.71 705.44 300.59 704.66 293.85 703.94 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 706.38 287.44 703.14 280.77 701.51 288 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 724 290.6 0 40 9 -bam_files ",
		label=bam_files,
		lp="724,292.5",
		pos="e,702.96,279.27 706.04,305.71 705.44,300.59 704.66,293.85 703.94,287.67"];
	qc_measures -> qc_report	[_draw_="c 7 -#000000 B 4 693.16 80.71 693.87 75.59 694.81 68.85 695.67 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 698.1 63.04 696.64 55.76 693.24 62.36 ",
		pos="e,696.85,54.265 693.16,80.709 693.87,75.593 694.81,68.848 695.67,62.666"];
}